Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq CHD7 55636 hgsc.bcm.edu;bcgsc.ca 37 8 61728947 61728951 + Frame_Shift_Del DEL TCTTA TCTTA - novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 TCTTA TCTTA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_017780 exon8 c.2499_2503del p.833_835del TTCAGCTCTTATC . 90 34 132 0 . . GFM1 85476 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 158362500 158362511 + In_Frame_Del DEL AGCAGGTACCGG AGCAGGTACCGG - novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 AGCAGGTACCGG AGCAGGTACCGG . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_024996 exon1 c.76_81del p.26_27del AGAGGAAGCAGGT . 46 11 77 0 . . THAP5 168451 hgsc.bcm.edu 37 7 108210000 108210001 + Frame_Shift_Ins INS - - A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_001130475 exon1 c.14_15insT p.C5fs GCTGCGCAATAGC . 52 18 70 0 . . ZNF727 442319 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 63538216 63538216 + Missense_Mutation SNP A A C novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_001159522 exon4 c.A789C p.K263N TCACAAAGCCTTT . 46 9 55 0 . . KLK6 5653 hgsc.bcm.edu 37 19 51470530 51470530 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 KLK6,colon,carcinoma,0,1 KLK6 NM_001012964 exon3 c.C92A p.T31K TGAGATGTCTTGT . 43 2 47 0 . 0 XRCC6 2547 hgsc.bcm.edu;bcgsc.ca 37 22 42046801 42046801 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_001469 exon8 c.G1035T p.L345F AGGTTTGATGCTC . 63 4 85 0 . . BAP1 8314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52440307 52440307 + Nonsense_Mutation SNP T T A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_004656 exon9 c.A745T p.K249X TCACCTTCAGCAC . 11 8 24 0 . . TTN 7273 hgsc.bcm.edu 37 2 179452261 179452261 + Missense_Mutation SNP C C T rs371286595 TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 TTN_ENST00000359218,NS,carcinoma,0,5 TTN_ENST00000359218 NM_001267550 exon306 c.G63775A p.V21259I CATTTACGAATAC . 18 2 30 0 . 0 KRTAP12-2 353323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 46086661 46086661 + Missense_Mutation SNP A A G novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_181684 exon1 c.T143C p.V48A AAGCTCACGGGCA . 18 11 53 0 . . B4GALT5 9334 hgsc.bcm.edu 37 20 48256337 48256337 + Silent SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_004776 exon7 c.G795A p.L265L AGGAAGCCTAGGA . 73 4 108 0 . . KLK10 5655 hgsc.bcm.edu 37 19 51518101 51518101 + Silent SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 KLK10,NS,carcinoma,0,1 KLK10 NM_145888 exon6 c.C786A p.I262I TTTGCAGATCTGG . 46 2 50 0 . 0 SIX1 6495 hgsc.bcm.edu 37 14 61115903 61115903 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 SIX1,NS,carcinoma,0,1 SIX1 NM_005982 exon1 c.C5T p.S2L AGCATCGACATGG . 16 2 17 0 . 0 PALMD 54873 hgsc.bcm.edu 37 1 100152323 100152323 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 PALMD,NS,carcinoma,0,2 PALMD NM_017734 exon4 c.C343T p.R115W ATTGAGCGGACAA . 35 2 133 0 . 0 TRIOBP 11078 hgsc.bcm.edu 37 22 38121037 38121037 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 TRIOBP_ENST00000344404,colon,carcinoma,0,1 TRIOBP_ENST00000344404 NM_001039141 exon7 c.G2474T p.R825I TCCCCAGATCATC . 44 2 86 0 . 0 LBR 3930 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 225607439 225607439 + Missense_Mutation SNP T T C novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 LBR,NS,carcinoma,0,1 LBR NM_194442 exon4 c.A428G p.D143G GGTGCGTCATTTC . 99 5 63 1 . 0 FTH1 2495 hgsc.bcm.edu 37 11 61734852 61734852 + Missense_Mutation SNP C C A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 FTH1,NS,malignant_melanoma,0,1 FTH1 NM_002032 exon1 c.G46T p.D16Y CTGAGTCCTGGTG . 26 3 49 0 . 0 ANKIB1 54467 hgsc.bcm.edu 37 7 92027127 92027127 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 ANKIB1,NS,carcinoma,0,1 ANKIB1 NM_019004 exon19 c.G2486T p.R829L CCCTGCGTGACTA . 27 2 37 0 . 0 MAP1A 4130 hgsc.bcm.edu 37 15 43818597 43818597 + Missense_Mutation SNP G G T rs372656438 TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_002373 exon4 c.G4926T p.R1642S CTGGAGGGGGCAG . 78 3 62 0 . . RBFOX1 54715 hgsc.bcm.edu 37 16 7629838 7629838 + Silent SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 RBFOX1_ENST00000550418,NS,carcinoma,0,3 RBFOX1_ENST00000550418 NM_145891 exon3 c.G390T p.T130T AAACACGGAAAAC . 20 2 54 0 . 0 PSTK 118672 hgsc.bcm.edu 37 10 124742803 124742803 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 PSTK,rectum,carcinoma,0,1 PSTK NM_153336 exon3 c.G524A p.C175Y GCTTTTGCCAGCT . 39 2 52 0 . 0 CYP2F1 1572 hgsc.bcm.edu 37 19 41628798 41628798 + Silent SNP C C T rs374776224 TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_000774 exon7 c.C894T p.G298G CTTTGGCGGCACC . 46 4 45 0 . . JAKMIP2 9832 hgsc.bcm.edu 37 5 146970683 146970683 + RNA SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . . . . . GAAAAGCAAATCC . 65 4 74 0 . . TTC40 54777 hgsc.bcm.edu 37 10 134646882 134646882 + Missense_Mutation SNP C C T rs138288778 TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 C10orf92,NS,carcinoma,0,1 C10orf92 NM_001200049 exon50 c.G7097A p.R2366H TGGAGGCGATTCC . 31 2 52 0 0.000 0 LRRFIP1 9208 hgsc.bcm.edu 37 2 238672115 238672115 + Missense_Mutation SNP A A T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 LRRFIP1_ENST00000392000,NS,carcinoma,0,2 LRRFIP1_ENST00000392000 NM_001137552 exon11 c.A1759T p.T587S GTAGAAACCCTTA . 44 2 72 0 . 0 ELMSAN1 91748 hgsc.bcm.edu;bcgsc.ca 37 14 74205859 74205859 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_194278 exon2 c.C853A p.P285T CCTGGGGTTGCTG . 46 4 67 0 . . DNAH2 146754 hgsc.bcm.edu;broad.mit.edu 37 17 7644290 7644290 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_020877 exon10 c.C1669T p.R557C CGGCGTCGCATCG . 10 7 9 0 . . GTF3C3 9330 hgsc.bcm.edu 37 2 197657764 197657764 + Missense_Mutation SNP C C A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 GTF3C3,colon,carcinoma,0,1 GTF3C3 NM_001206774 exon3 c.G327T p.E109D TTCTTCCTCCTCC . 17 2 27 0 . 0 COL11A1 1301 hgsc.bcm.edu;bcgsc.ca 37 1 103455077 103455077 + Silent SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_080629 exon29 c.C2427T p.D809D TACTCTGTCACCT . 79 4 225 0 . . RAB3IP 117177 hgsc.bcm.edu 37 12 70178544 70178544 + Silent SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_175623 exon4 c.G603T p.V201V AAAAGTGCGAGAT . 78 3 120 0 . . GJA1 2697 hgsc.bcm.edu;bcgsc.ca 37 6 121768335 121768335 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 GJA1,NS,carcinoma,0,1 GJA1 NM_000165 exon2 c.G342T p.K114N ACTCAAGGTTGCC . 18 3 60 0 . 0 ZNF839 55778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 102800960 102800960 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_018335 exon4 c.G1486A p.V496M GTGACCGTGTATG . 44 24 100 0 . . KCNK10 54207 hgsc.bcm.edu 37 14 88693857 88693857 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 KCNK10_ENST00000312350,brain,glioma,0,2 KCNK10_ENST00000312350 NM_138318 exon4 c.C543A p.S181R TTCAGTGCTCGGA . 46 2 70 1 . 0 LIM2 3982 hgsc.bcm.edu 37 19 51883801 51883801 + Missense_Mutation SNP A A G novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_030657 exon4 c.T544C p.Y182H GGATGTAGGACCA . 55 4 41 0 . . MYO9A 4649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 72226035 72226035 + Missense_Mutation SNP G G C novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_006901 exon18 c.C2538G p.F846L GGATTTGAAATTT . 180 101 183 0 . . KIF24 347240 hgsc.bcm.edu;bcgsc.ca 37 9 34259675 34259675 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_194313 exon10 c.C1544T p.A515V GTTTTGGCATTGC . 46 4 41 0 . . NOX4 50507 hgsc.bcm.edu;broad.mit.edu 37 11 89106611 89106611 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 NOX4,colon,carcinoma,0,2 NOX4 NM_001143836 exon12 c.G1124A p.G375E CAGTCTCCTACTA . 53 4 90 0 . 0 COL22A1 169044 hgsc.bcm.edu 37 8 139729078 139729078 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 COL22A1,NS,carcinoma,0,1 COL22A1 NM_152888 exon28 c.C2390A p.P797H TCTCCAGGTCGGC . 27 2 34 0 . 0 AKAP13 11214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 86125248 86125248 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_007200 exon7 c.G3949A p.E1317K CCTGAGGAAGCCA . 40 14 44 0 . . C1orf186 440712 hgsc.bcm.edu 37 1 206243207 206243207 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 C1orf186,NS,carcinoma,0,1 C1orf186 NM_001007544 exon3 c.C55A p.L19I GGAAGAGGGACAC . 46 2 28 0 . 0 LAMB3 3914 hgsc.bcm.edu 37 1 209791986 209791986 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 LAMB3,NS,malignant_melanoma,0,1 LAMB3 NM_000228 exon19 c.C2720T p.A907V ATAGTGGCTGCAT . 26 2 16 0 . 0 OTUD5 55593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 48801512 48801512 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_001136157 exon2 c.C627A p.D209E CTTCTTGTCTCGT . 33 13 58 0 . . CASK 8573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 41469246 41469246 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_001126054 exon12 c.G1066A p.E356K GAATCTCTTCCAG . 75 24 108 0 . . MAML2 84441 hgsc.bcm.edu 37 11 95825221 95825221 + Silent SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 MAML2,NS,carcinoma,0,1 MAML2 NM_032427 exon2 c.G1974A p.Q658Q CTGCTGCTGTTGT . 27 2 48 2 . 0 ZNF100 163227 hgsc.bcm.edu;bcgsc.ca 37 19 21910398 21910398 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_173531 exon5 c.G716A p.G239D GCTTTGCCACAAT . 84 4 97 0 . . OR2L13 284521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 248263072 248263072 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_175911 exon3 c.C395T p.P132L ATTATCCTATCCG . 69 11 37 0 . . ZNF557 79230 hgsc.bcm.edu 37 19 7083328 7083328 + Missense_Mutation SNP A A G novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 ZNF557,right_lower_lobe,carcinoma,0,1 ZNF557 NM_001044387 exon8 c.A866G p.E289G CGGGGGAGGGTCA . 50 2 52 0 . 0 ANKHD1 54882 hgsc.bcm.edu 37 5 139885404 139885404 + Nonsense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_017747 exon18 c.C3358T p.R1120X TCTGAACGAACTA . 43 4 59 0 . . ZNF583 147949 hgsc.bcm.edu 37 19 56935118 56935118 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 ZNF583,right_upper_lobe,carcinoma,0,1 ZNF583 NM_001159861 exon5 c.G1091A p.R364H GCCATCGTGGATA . 45 2 42 0 . 0 FBXO10 26267 hgsc.bcm.edu;bcgsc.ca 37 9 37537628 37537628 + Silent SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_012166 exon3 c.C898A p.R300R GGTCCCGGCTCTC . 65 4 55 0 . . LYPLAL1 127018 hgsc.bcm.edu 37 1 219384997 219384997 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_138794 exon5 c.G641T p.S214I AGCTAAGCAAAAC . 94 4 70 0 . . OR4B1 119765 hgsc.bcm.edu 37 11 48238420 48238420 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 OR4B1,right_upper_lobe,carcinoma,0,1 OR4B1 NM_001005470 exon1 c.C59T p.A20V ATCCAGCTGTGCA . 28 2 52 0 . 0 WBP11P1 441818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 30092638 30092638 + RNA SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . . . . . GACACCGACGGAT . 16 8 22 0 . . OSGIN2 734 hgsc.bcm.edu 37 8 90937735 90937735 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 .,2 . NM_001126111 exon6 c.G1625T p.R542I TTGAAAGAGGAGG . 48 2 77 0 . 73 STEAP1B 256227 hgsc.bcm.edu;bcgsc.ca 37 7 22533072 22533072 + Missense_Mutation SNP C C A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_001164460 exon3 c.G468T p.K156N CATCCACTTATCC . 97 4 117 0 . . MEF2A 4205 hgsc.bcm.edu 37 15 100211761 100211761 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 MEF2A_ENST00000354410,NS,carcinoma,0,3 MEF2A_ENST00000354410 NM_005587 exon5 c.C295T p.P99S GACAGCCCAGACC . 123 5 93 1 . 0 ATP1A2 477 hgsc.bcm.edu 37 1 160097563 160097563 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 ATP1A2,NS,carcinoma,0,2 ATP1A2 NM_000702 exon8 c.G970A p.G324S CTCATCGGCATCA . 37 2 22 0 . 0 PAXIP1 22976 hgsc.bcm.edu 37 7 154767932 154767932 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 PAXIP1,NS,carcinoma,0,1 PAXIP1 NM_007349 exon6 c.C548A p.P183H AGACGAGGATGAT . 36 2 67 0 . 0 ASIC4 55515 hgsc.bcm.edu 37 2 220397179 220397179 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 ACCN4,NS,carcinoma,0,1 ACCN4 NM_182847 exon4 c.G1379A p.C460Y GCCACTGCCGGAT . 18 2 21 0 . 0 MPZL3 196264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 118106178 118106178 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_198275 exon4 c.G578A p.R193K CCAGACCTGCTCC . 28 10 50 0 . . TRIM40 135644 hgsc.bcm.edu 37 6 30113806 30113806 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_138700 exon2 c.G381T p.K127N CAGAAAGGACATT . 40 3 50 0 . . ZNF16 7564 hgsc.bcm.edu 37 8 146156248 146156248 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 ZNF16,colon,carcinoma,0,1 ZNF16 NM_006958 exon3 c.C1925A p.S642X AGGACCGAACGCT . 41 3 57 0 . 0 SSC5D 284297 hgsc.bcm.edu 37 19 56015484 56015484 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_001195267 exon13 c.G2787T p.E929D TCCAGAGCCGGAA . 78 4 72 0 . . CATSPERB 79820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 92105595 92105595 + Splice_Site SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_024764 exon17 c.1433-1G>A . CCATTCCTATTAG . 46 19 70 0 . . TNS3 64759 hgsc.bcm.edu 37 7 47384537 47384537 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 TNS3,NS,carcinoma,0,1 TNS3 NM_022748 exon19 c.C2551A p.P851T TCTCTGGAGACAC . 33 2 48 0 . 0 MYO3A 53904 hgsc.bcm.edu 37 10 26310439 26310439 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 MYO3A,NS,carcinoma,0,1 MYO3A NM_017433 exon8 c.C593T p.A198V TGATTGCATGTGA . 37 3 48 0 . 0 GCN1L1 10985 hgsc.bcm.edu 37 12 120622662 120622662 + Silent SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 GCN1L1,NS,carcinoma,0,1 GCN1L1 NM_006836 exon3 c.C150A p.L50L TTTGCAGAGCCCC . 17 2 33 0 . 0 BAD 572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 64051695 64051695 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_032989 exon2 c.G146A p.S49N TGGTGACTGGCGT . 23 6 27 0 . . SPOCD1 90853 hgsc.bcm.edu 37 1 32280314 32280314 + Silent SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 SPOCD1,colon,carcinoma,0,1 SPOCD1 NM_144569 exon2 c.G621A p.K207K CCATTTCTTTCTT . 21 2 53 0 . 0 CTAGE7P 119437 hgsc.bcm.edu;bcgsc.ca 37 10 131905462 131905462 + RNA SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . . . . . ATGACTGAATTAT . 155 16 219 0 . . ZNF268 10795 hgsc.bcm.edu 37 12 133764550 133764550 + Silent SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 ZNF268,rectum,carcinoma,0,1 ZNF268 NM_152943 exon3 c.G126T p.L42L TGGTCTGCAACCT . 45 2 72 0 . 0 MYH8 4626 hgsc.bcm.edu 37 17 10303865 10303865 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 MYH8,NS,carcinoma,0,1 MYH8 NM_002472 exon27 c.G3577A p.A1193T GAGCAGCCACCAT . 37 2 38 1 . 0 PIP4K2B 8396 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 36934618 36934618 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_003559 exon6 c.C662T p.T221M GCAACCGTAGAAC . 25 4 37 0 . . VPS33B 26276 hgsc.bcm.edu 37 15 91557064 91557064 + Silent SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 VPS33B,NS,carcinoma,0,1 VPS33B NM_018668 exon5 c.C327T p.R109R GTATTTGCGAGTT . 66 4 57 0 . 0 SVOP 55530 hgsc.bcm.edu 37 12 109334559 109334559 + Splice_Site SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 SVOP_ENST00000299134,NS,carcinoma,0,2 SVOP_ENST00000299134 NM_018711 exon8 c.609+1G>A . TACCTACGAAACA . 27 2 31 0 . 0 COL6A3 1293 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 238280843 238280843 + Missense_Mutation SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_004369 exon9 c.G3817A p.V1273I GGATGACAGCCAC . 20 4 30 0 . . ARMC12 221481 hgsc.bcm.edu 37 6 35716414 35716414 + Missense_Mutation SNP G G A rs200490512 bycluster TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 C6orf81,colon,carcinoma,0,1 C6orf81 NM_145028 exon6 c.G871A p.A291T CGGAACGCACCCC . 23 2 22 0 . 0 BTN2A3P 54718 hgsc.bcm.edu 37 6 26422353 26422353 + RNA SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 BTN2A3,NS,carcinoma,0,9 BTN2A3 . . . . ATGGAACCAGCTG . 34 2 43 1 . 0 THRAP3 9967 hgsc.bcm.edu 37 1 36766611 36766611 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 THRAP3,NS,carcinoma,0,1 THRAP3 NM_005119 exon10 c.G2428T p.D810Y GGCTTTGACAAAT . 27 3 54 0 . 0 TMPO 7112 hgsc.bcm.edu 37 12 98927571 98927571 + Silent SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 TMPO_ENST00000266732,NS,carcinoma,0,1 TMPO_ENST00000266732 NM_003276 exon4 c.G1536A p.Q512Q CAGGCAGCTGCCT . 45 3 38 0 . 0 PIP5KL1 138429 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 130688240 130688240 + Silent SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_001135219 exon8 c.C669T p.C223C CACCTCGCAGCCT . 55 20 105 0 . . RAB3B 5865 broad.mit.edu 37 1 52385603 52385603 + Missense_Mutation SNP C C A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . RAB3B NM_002867 exon5 c.G656T p.C219F GCCTAGCATGAGC . 3 2 13 0 . 22 ZC3H11A 9877 broad.mit.edu 37 1 203821424 203821424 + Missense_Mutation SNP T T C novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . ZC3H11A NM_014827 exon20 c.T2330C p.I777T AACTAATATGGGA . 394 6 283 1 . 71 NAV3 89795 broad.mit.edu;bcgsc.ca 37 12 78362376 78362378 + In_Frame_Del DEL CAA CAA - novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 NAV3,NS,carcinoma,-2,1 NAV3 NM_014903 exon5 c.565_567del p.189_189del CACCATCAACAAC . 37 8 41 0 . 506 . 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 22386639 22386639 + RNA SNP A A C rs372093887 alternate_allele TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . . . . . CTGCACAGGGGTG . 29 12 41 0 . . BLM 641 broad.mit.edu;bcgsc.ca 37 15 91310162 91310162 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . BLM NM_000057 exon10 c.G2216T p.G739V TGACAGGTGATAA . 178 7 178 1 . 122 TMEM87A 25963 broad.mit.edu 37 15 42519937 42519937 + Missense_Mutation SNP A A G novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . TMEM87A NM_015497 exon14 c.T1271C p.M424T AACTTCATGGTTG . 38 3 39 0 . 56 RSAD1 55316 broad.mit.edu 37 17 48560713 48560713 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 RSAD1,colon,carcinoma,+1,1 RSAD1 NM_018346 exon6 c.G917T p.R306L ATGGACGATTTAT . 32 3 47 0 . 36 AP2S1 1175 broad.mit.edu 37 19 47349293 47349293 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . AP2S1 NM_004069 exon2 c.C110A p.A37D ACCACGGCATGCA . 17 3 21 0 . 12 HMHA1 23526 broad.mit.edu 37 19 1068619 1068619 + Silent SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . HMHA1 NM_001258328 exon2 c.C345T p.S115S CGCCAGCCCGGGC . 8 3 10 0 . 78 ZNF181 339318 broad.mit.edu 37 19 35232200 35232200 + Missense_Mutation SNP T T G rs143797666 TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 ZNF181,NS,carcinoma,0,5 ZNF181 NM_001029997 exon4 c.T914G p.V305G GCCATGTCTCATC . 79 3 88 1 . 65 GON4L 54856 ucsc.edu 37 1 155733245 155733245 + Silent SNP C C T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 GON4L_ENST00000368331,NS,carcinoma,0,1 GON4L NM_001037533 exon22 c.G4584A p.E1528E TTCTTCCTCCTCT . 59 13 50 5 . 392 CACNA1E 777 ucsc.edu 37 1 181765857 181765857 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . CACNA1E NM_001205293 exon47 c.G6262T p.E2088X TCAAAAGAGCGAA . 27 4 18 0 . 778 MUC4 4585 ucsc.edu 37 3 195509287 195509287 + Missense_Mutation SNP T T G rs201610800 bycluster TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . MUC4 NM_018406 exon2 c.A9164C p.N3055T AGAGGGTTGGCGT . 81 16 85 8 . 1505 SPATS1 221409 ucsc.edu 37 6 44310855 44310855 + Missense_Mutation SNP G G T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . SPATS1 NM_145026 exon2 c.G23T p.G8V TCACTGGAAACAG . 35 4 35 0 . 61 CDC27 996 ucsc.edu;bcgsc.ca 37 17 45232055 45232055 + Missense_Mutation SNP C C T rs200268612 bycluster TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . CDC27 NM_001114091 exon8 c.G940A p.G314R GGGCTCCGGTGGA . 45 22 54 2 . 337 KCNJ14 3770 ucsc.edu 37 19 48967988 48967988 + Missense_Mutation SNP G G A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . KCNJ14 NM_013348 exon3 c.C1265A p.P422Q CTGCTAGCCCCCG . 41 4 33 0 . 28 POLR3H 171568 ucsc.edu;bcgsc.ca 37 22 41928664 41928664 + Silent SNP G G A rs369041845 TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . POLR3H NM_001018050 exon3 c.C294T p.H98H GTTACCGTGCACT . 27 4 28 0 . 30 CHD5 26038 bcgsc.ca 37 1 6188616 6188616 + Missense_Mutation SNP A G G novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . CHD5 NM_015557 exon24 c.T3673C p.S1225P CTTTGGAGGACTG . 14 3 53 0 . 267 DNAJC16 23341 bcgsc.ca 37 1 15886125 15886125 + Silent SNP T C C novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . DNAJC16 NM_015291 exon8 c.T1128C p.P376P CTGCCCTGTGAAA . 23 3 50 0 . 59 ZNF697 90874 bcgsc.ca 37 1 120166656 120166656 + Missense_Mutation SNP G A A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . ZNF697 NM_001080470 exon3 c.C310T p.P104S GTCCTGGGAACAT . 14 3 33 0 . 26 FAM117B 150864 bcgsc.ca 37 2 203630387 203630387 + Missense_Mutation SNP C T T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . FAM117B NM_173511 exon8 c.C1670T p.T557I TGTCTACAAACAC . 22 3 45 0 . 73 ATG16L1 55054 bcgsc.ca 37 2 234164841 234164841 + Missense_Mutation SNP G T T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . ATG16L1 NM_198890 exon2 c.G209T p.R70M AGATAAGGTATTT . 46 4 63 0 . 83 ACSL6 23305 bcgsc.ca 37 5 131329781 131329781 + Missense_Mutation SNP G T T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . ACSL6 NM_001009185 exon2 c.C213A p.H71Q TGGCCGGTGAGTG . 15 3 31 0 . 169 CTGF 1490 bcgsc.ca 37 6 132270556 132270556 + Missense_Mutation SNP T G G novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . CTGF NM_001901 exon5 c.A898C p.T300P GCAGGGTGGTGGT . 35 9 77 3 . 36 . 114182 bcgsc.ca 37 6 134924992 134924992 + RNA SNP C T T rs112695384 bycluster TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . . . . . AACAAACTAATAA . 13 7 34 1 C|0.500;T|0.500 . . 114182 bcgsc.ca 37 6 134925007 134925007 + RNA SNP T A A rs202151939 TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . . . . . TGTATATAAGAGC . 13 7 33 1 . . . 0 bcgsc.ca 37 7 45856067 45856067 + RNA SNP C A A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . . . . . GCTGCCCCAGCAG . 10 3 20 0 . . ADAMTSL2 9719 bcgsc.ca 37 9 136405777 136405777 + Missense_Mutation SNP G A A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . ADAMTSL2 NM_014694 exon6 c.G470A p.G157D TGGACGGCCAGCG . 48 4 51 0 . 40 . 399857 bcgsc.ca 37 11 3621201 3621201 + RNA SNP T C C novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . . . . . GATCCCTGAAATG . 57 4 101 0 . . TENM4 26011 bcgsc.ca 37 11 78449511 78449511 + Missense_Mutation SNP C T T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . . NM_001098816 exon20 c.G2861A p.S954N TGCCTGCTGATTG . 57 4 85 0 . . ARHGAP5 394 bcgsc.ca 37 14 32563150 32563150 + Missense_Mutation SNP C T T rs373639217 TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . ARHGAP5 NM_001173 exon2 c.C3275T p.A1092V ACTATGCGGAACC . 66 4 92 0 . 166 HSP90AA1 3320 bcgsc.ca 37 14 102548746 102548746 + Silent SNP G A A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . HSP90AA1 NM_001017963 exon11 c.C2157T p.C719C AATACAGCATGGA . 44 4 73 0 . 65 GPS1 2873 bcgsc.ca 37 17 80013654 80013654 + Missense_Mutation SNP G A A novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . GPS1 NM_212492 exon7 c.G907A p.A303T CAGGCTGCCAAGT . 15 3 27 0 . 30 HSH2D 84941 bcgsc.ca 37 19 16268483 16268483 + Missense_Mutation SNP G T T novel TCGA-W5-AA2W-01A-11D-A417-09 TCGA-W5-AA2W-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61c59381-50b9-4496-9009-b4232c3000bf 174984c1-38b2-4073-9373-9e603d987161 . HSH2D NM_032855 exon9 c.G937T p.V313L CAAATGGTAGTGA . 45 4 58 0 . 16