Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq SYCE1 93426 hgsc.bcm.edu 37 10 135371375 135371375 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 SYCE1_ENST00000343131,NS,malignant_melanoma,0,2 SYCE1_ENST00000343131 NM_001143763 exon6 c.G367A p.A123T TGTGTGCCTCACT . 43 2 48 0 . 0 ACTG1 71 hgsc.bcm.edu 37 17 79478576 79478576 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 ACTG1,colon,carcinoma,0,1 ACTG1 NM_001614 exon4 c.G440A p.R147H GTGGTGCGCCCAG . 27 2 35 0 . 0 ZNF391 346157 hgsc.bcm.edu 37 6 27368676 27368676 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 ZNF391_ENST00000244576,colon,carcinoma,0,2 ZNF391_ENST00000244576 NM_001076781 exon3 c.G527T p.R176L TTAGCCGGAGCAC . 31 3 43 0 . 0 SELL 6402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 169670779 169670779 + Missense_Mutation SNP A A G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_000655 exon7 c.T1042C p.F348L GAATGAAGAGGGG . 68 9 58 0 . . DTX1 1840 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 113531422 113531422 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_004416 exon4 c.C1082T p.P361L ACCCGCCGCCCGT . 64 13 39 0 . . FAT3 120114 hgsc.bcm.edu 37 11 92534618 92534618 + Silent SNP C C A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 FAT3_ENST00000409404,NS,carcinoma,0,2 FAT3_ENST00000409404 NM_001008781 exon9 c.C8439A p.V2813V GCCAGTCTTTGAA . 49 2 57 0 . 0 NBEAL1 65065 hgsc.bcm.edu 37 2 203995146 203995146 + Missense_Mutation SNP G G T rs376644554 alternate_allele TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 NBEAL1_ENST00000449802,colon,carcinoma,0,1 NBEAL1_ENST00000449802 NM_001114132 exon24 c.G3424T p.A1142S CTGTACGCATTGC . 42 2 24 0 . 0 SELL 6402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 169670703 169670703 + Missense_Mutation SNP T T C novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_000655 exon7 c.A1118G p.K373R ATACCTTTTTTTA . 81 13 68 0 . . GRB7 2886 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 37899545 37899545 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001242442 exon5 c.G645T p.K215N GTTCAAGAGCTCC . 39 4 37 0 . . MARCH1 55016 hgsc.bcm.edu 37 4 164449941 164449941 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 MARCH1_ENST00000503008,NS,carcinoma,0,2 MARCH1_ENST00000503008 NM_001166373 exon8 c.C829A p.P277T CAGATGGCAGTGA . 65 3 48 0 . 0 C5orf30 90355 hgsc.bcm.edu 37 5 102611819 102611819 + Missense_Mutation SNP G G T rs377580691 alternate_allele TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 C5orf30,NS,carcinoma,0,1 C5orf30 NM_033211 exon3 c.G199T p.G67C ACGACTGGCGAGG . 47 2 37 0 . 0 DMAP1 55929 hgsc.bcm.edu 37 1 44684374 44684374 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 DMAP1,NS,carcinoma,0,1 DMAP1 NM_001034024 exon6 c.G667T p.E223X GGGCACGAACGAC . 43 2 35 0 . 0 DDHD1 80821 hgsc.bcm.edu 37 14 53619480 53619480 + Missense_Mutation SNP T T C rs200797826 bycluster TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 .,102 . NM_001160147 exon1 c.A337G p.S113G AGGAGCTGCCGCC . 15 4 9 0 . 202 NPHP4 261734 hgsc.bcm.edu 37 1 5951028 5951028 + Missense_Mutation SNP C C A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 NPHP4,colon,carcinoma,0,1 NPHP4 NM_015102 exon17 c.G2204T p.R735L CAGCGCCGCTCAC . 36 2 32 0 . 0 SAAL1 113174 hgsc.bcm.edu 37 11 18127573 18127573 + Missense_Mutation SNP A A G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_138421 exon1 c.T16C p.S6P GCGGCGAGGGGTT . 97 6 76 0 . . SLX4 84464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 3640840 3640840 + Silent SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_032444 exon12 c.C2799A p.G933G GTGCTGGCCCTGG . 34 4 25 0 . . GLYATL1 92292 hgsc.bcm.edu 37 11 58723373 58723373 + Missense_Mutation SNP C C A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 GLYATL1_ENST00000317391,NS,carcinoma,0,2 GLYATL1_ENST00000317391 NM_080661 exon7 c.C875A p.P292Q ATATTCCATTTTA . 20 2 29 0 . 0 SDK1 221935 hgsc.bcm.edu 37 7 4218209 4218209 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 SDK1,spleen,lymphoid_neoplasm,0,1 SDK1 NM_152744 exon35 c.G5089T p.G1697C TTTGTCGGCGAGG . 45 2 32 0 . 0 SLC37A3 84255 hgsc.bcm.edu 37 7 140043303 140043303 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 SLC37A3,rectum,carcinoma,0,1 SLC37A3 NM_207113 exon13 c.G1235A p.R412H TCCTGGCGACCCA . 53 3 40 0 . 0 SIRPD 128646 hgsc.bcm.edu 37 20 1532455 1532455 + Silent SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_178460 exon2 c.C303A p.S101S GCGGGTGGAAAAG . 80 4 66 0 . . DYRK4 8798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 4700465 4700465 + Splice_Site SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_003845 exon3 c.118+1G>A . CGGCAGGTATGCC . 69 23 51 0 . . SLC23A3 151295 hgsc.bcm.edu 37 2 220034386 220034386 + Missense_Mutation SNP C C A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 SLC23A3_ENST00000455516,NS,carcinoma,0,2 SLC23A3_ENST00000455516 NM_001144890 exon2 c.G177T p.M59I AGAAGCCATGACC . 60 2 54 0 . 0 WWP2 11060 hgsc.bcm.edu 37 16 69921986 69921986 + Missense_Mutation SNP G G T rs139052693 alternate_allele TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 WWP2,NS,carcinoma,0,1 WWP2 NM_001270454 exon8 c.G748T p.V250F CCTTCCGTTGTTG . 49 2 51 0 . 0 HERC1 8925 hgsc.bcm.edu;bcgsc.ca 37 15 63967058 63967058 + Silent SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_003922 exon38 c.C7329A p.G2443G TGTTAGGCCTGTT . 65 4 63 0 . . FLNC 2318 hgsc.bcm.edu;bcgsc.ca 37 7 128496613 128496613 + Silent SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001458 exon44 c.G7293T p.V2431V TGCCGTGCAGCTG . 80 4 57 0 . . PDIA4 9601 hgsc.bcm.edu 37 7 148701059 148701059 + Missense_Mutation SNP C C T rs374110175 TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 PDIA4,NS,carcinoma,0,1 PDIA4 NM_004911 exon10 c.G1765A p.D589N GGACGTCGTTGGC . 36 2 42 0 . 0 GPC1 2817 hgsc.bcm.edu;bcgsc.ca 37 2 241401740 241401740 + Missense_Mutation SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_002081 exon3 c.G458A p.R153H ACTACCGCGGTGC . 63 4 69 0 . . AFF4 27125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 132232701 132232701 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_014423 exon11 c.G1621T p.E541X CACTTTCTGATCC . 31 4 28 0 . . BRD7 29117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 50368662 50368662 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_013263 exon7 c.G847T p.E283X GTGCTTCGGCATC . 13 9 24 0 . . DLGAP5 9787 hgsc.bcm.edu 37 14 55636119 55636119 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 DLGAP5,NS,carcinoma,0,1 DLGAP5 NM_014750 exon12 c.C1546A p.Q516K ATACCTGAAAACT . 32 2 36 0 . 0 PATZ1 23598 hgsc.bcm.edu 37 22 31731753 31731753 + Missense_Mutation SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 ZNF278,NS,carcinoma,0,1 ZNF278 NM_032050 exon3 c.C1432T p.R478W CTGCCCGCAAGTA . 38 2 65 0 . 0 ZNF766 90321 hgsc.bcm.edu;bcgsc.ca 37 19 52793998 52793998 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001010851 exon4 c.G954T p.W318C ACATTGGAGAATT . 43 4 38 0 . . DSTYK 25778 hgsc.bcm.edu;bcgsc.ca 37 1 205132087 205132087 + Silent SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_199462 exon5 c.G1605A p.S535S AACTGACGACCCT . 87 4 78 0 . . INTS2 57508 hgsc.bcm.edu 37 17 59981823 59981823 + Silent SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 INTS2,bladder,carcinoma,0,1 INTS2 NM_020748 exon9 c.C1329A p.V443V GTACCTGACAAGT . 46 2 43 0 . 0 PRKDC 5591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 48710796 48710796 + Splice_Site SNP A A G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001081640 exon74 c.10457+2T>C . ACACCAACCTCTT . 76 9 65 0 . . BICD1 636 hgsc.bcm.edu 37 12 32480599 32480599 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001714 exon5 c.C1210T p.H404Y GAGGCCCATGACT . 43 4 18 0 . . ZNF598 90850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2052396 2052396 + Missense_Mutation SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_178167 exon7 c.C706T p.R236W TCTCCCGGAAGTG . 30 12 17 0 . . SLCO4C1 353189 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 101582976 101582976 + Silent SNP A A G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_180991 exon10 c.T1791C p.P597P AGTTATAGGAGTA . 94 7 52 0 . . CCDC150 284992 hgsc.bcm.edu 37 2 197521765 197521765 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 CCDC150,NS,carcinoma,0,1 CCDC150 NM_001080539 exon4 c.C481T p.R161C AATTTGCGCCAGC . 33 2 25 0 . 0 FTH1 2495 hgsc.bcm.edu 37 11 61734852 61734852 + Missense_Mutation SNP C C A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 FTH1,NS,malignant_melanoma,0,1 FTH1 NM_002032 exon1 c.G46T p.D16Y CTGAGTCCTGGTG . 29 3 38 0 . 0 MCM8 84515 hgsc.bcm.edu;bcgsc.ca 37 20 5948523 5948523 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_032485 exon10 c.G1075T p.A359S ATTGAAGCAAATT . 75 4 86 0 . . CACNA1E 777 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 181686266 181686266 + Silent SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001205293 exon11 c.G1353A p.K451K TGCAAAGGTAGAC . 37 5 23 0 . . FOXK1 221937 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 4722453 4722453 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001037165 exon1 c.G514T p.G172W GTGGACGGGGCCT . 23 11 25 0 . . IFT172 26160 hgsc.bcm.edu;bcgsc.ca 37 2 27702379 27702379 + Silent SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_015662 exon10 c.C1002T p.S334S TACCTGGCTAGGT . 60 4 77 0 . . ARHGEF11 9826 hgsc.bcm.edu;bcgsc.ca 37 1 156914912 156914912 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_198236 exon30 c.G2890A p.V964I GTTTTACCGCTTC . 66 4 42 0 . . TIGD3 220359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 65123582 65123582 + Missense_Mutation SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_145719 exon2 c.G303A p.M101I GCCCATGCTGCTC . 34 13 38 0 . . CALCR 799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 93055882 93055882 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 CALCR_ENST00000359558,NS,carcinoma,-1,2 CALCR_ENST00000359558 NM_001164737 exon16 c.G1313A p.R438H CATTGGCGCTTCA . 21 8 23 0 . -1 CNTN4 152330 hgsc.bcm.edu 37 3 3072560 3072560 + Missense_Mutation SNP A A G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 CNTN4_ENST00000418658,NS,lymphoid_neoplasm,0,2 CNTN4_ENST00000418658 NM_175607 exon16 c.A1684G p.M562V GATTTGATGATCC . 47 2 55 0 . 0 N4BP2 55728 hgsc.bcm.edu;bcgsc.ca 37 4 40133497 40133497 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_018177 exon13 c.C4604T p.A1535V TTCCAGCCATTAA . 65 4 56 0 . . CLUH 23277 hgsc.bcm.edu 37 17 2598253 2598253 + Missense_Mutation SNP G G C novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 .,2 . NM_015229 exon16 c.C2633G p.P878R GCCCCCGGGGGCC . 32 4 32 0 . . PSAP 5660 hgsc.bcm.edu;bcgsc.ca 37 10 73588681 73588681 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001042466 exon5 c.C529A p.L177I GGAGGAGAGGGAT . 55 4 53 0 . . GRIN2D 2906 hgsc.bcm.edu 37 19 48925132 48925132 + Missense_Mutation SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 GRIN2D,NS,carcinoma,0,1 GRIN2D NM_000836 exon10 c.G2182A p.D728N TATCCCGACATGC . 40 2 16 0 . 0 SCN3B 55800 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 123513240 123513240 + Missense_Mutation SNP C C G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_018400 exon3 c.G359C p.C120S ACATTGCAGGTGT . 31 12 19 0 . . PNPLA6 10908 hgsc.bcm.edu 37 19 7625960 7625960 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 .,1 . NM_001166111 exon32 c.C3907T p.P1303S ATTGAGCCCCCCA . 36 2 31 0 . 163 MGARP 84709 hgsc.bcm.edu 37 4 140196546 140196546 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 C4orf49,NS,chondrosarcoma,0,1 C4orf49 NM_032623 exon2 c.C83A p.A28E AGAGATGCTAGGA . 37 2 30 0 . 0 ZNF7 7553 hgsc.bcm.edu;bcgsc.ca 37 8 146067377 146067377 + Silent SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_003416 exon5 c.G885A p.Q295Q TATTCAGCATCAA . 44 4 31 0 . . TEX2 55852 hgsc.bcm.edu 37 17 62248512 62248512 + Silent SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 TEX2,NS,carcinoma,0,1 TEX2 NM_018469 exon7 c.C2640A p.G880G AGCCACGCCCATG . 30 3 34 0 . 0 TTC37 9652 hgsc.bcm.edu 37 5 94852864 94852864 + Silent SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 TTC37,NS,carcinoma,0,1 TTC37 NM_014639 exon21 c.C2277A p.L759L AAGGTGGAGGAGC . 42 2 36 0 . 0 MGME1 92667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 17956445 17956445 + Missense_Mutation SNP G G C novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_052865 exon3 c.G630C p.Q210H TGTCCAGCATATT . 45 12 43 0 . . CCSER1 401145 hgsc.bcm.edu;bcgsc.ca 37 4 91234071 91234071 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001145065 exon3 c.G1382T p.R461L GACTGCGATCCTC . 85 4 87 0 . . RNU5F-1 26828 hgsc.bcm.edu 37 1 220195933 220195933 + RNA SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . TAATTTGATATAA . 41 10 35 0 . . SLC9C1 285335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 111958835 111958835 + Nonsense_Mutation SNP G G C novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_183061 exon12 c.C1298G p.S433X TTTGTTGATGTGG . 39 10 36 0 . . CELSR2 1952 hgsc.bcm.edu 37 1 109813581 109813581 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 CELSR2,colon,NS,0,1 CELSR2 NM_001408 exon25 c.G7516T p.G2506W GGCTACGGGAACC . 45 2 39 1 . 0 MYO7A 4647 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 76883884 76883884 + Missense_Mutation SNP C C A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001127179 exon16 c.C1888A p.P630T TGCCAGCCCTTCT . 39 17 53 0 . . ARHGAP36 158763 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 130218321 130218321 + Missense_Mutation SNP C C G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_144967 exon5 c.C688G p.P230A CTCAATCCGATTG . 44 13 49 0 . . IQCA1 79781 hgsc.bcm.edu 37 2 237233410 237233410 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001270585 exon19 c.C2414A p.T805N AGAGGAGTTTTGG . 76 4 53 0 . . MUC16 94025 hgsc.bcm.edu 37 19 9018540 9018540 + Missense_Mutation SNP A A G rs200155559 bycluster TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_024690 exon24 c.T37634C p.L12545P GTGAACAGCACCA . 77 6 68 0 . . SSH3 54961 hgsc.bcm.edu;bcgsc.ca 37 11 67074544 67074544 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_017857 exon5 c.C496T p.P166S GTCTTGCCCCTCT . 46 4 39 0 . . IVL 3713 hgsc.bcm.edu;bcgsc.ca 37 1 152883026 152883026 + Silent SNP G G A rs45544033 bycluster TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_005547 exon2 c.G753A p.G251G GGAGGGGCAGCTG . 39 7 26 0 . . CALR3 125972 hgsc.bcm.edu 37 19 16593513 16593513 + Silent SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 CALR3,NS,carcinoma,0,1 CALR3 NM_145046 exon6 c.G762A p.P254P GAGCATCGGCGCT . 32 2 36 0 . 0 PTGS1 5742 hgsc.bcm.edu 37 9 125133501 125133501 + Missense_Mutation SNP T T C rs200490358 TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 .,1 . NM_001271164 exon2 c.T44C p.L15P TGCTCCTGCTCCC . 26 5 20 2 . 84 KRTAP9-3 83900 hgsc.bcm.edu 37 17 39389206 39389206 + Silent SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_031962 exon1 c.C453T p.Y151Y TGTGTACAGCTGC . 72 4 60 0 . . CCDC37 348807 hgsc.bcm.edu 37 3 126142435 126142435 + Missense_Mutation SNP G G A rs200815085 bycluster TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 CCDC37,rectum,carcinoma,0,1 CCDC37 NM_182628 exon13 c.G1234A p.E412K GAGACGGAGAAGA . 43 2 41 0 . 0 ADAMTS7 11173 hgsc.bcm.edu 37 15 79090371 79090371 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 ADAMTS7,NS,malignant_melanoma,0,1 ADAMTS7 NM_014272 exon3 c.C541A p.H181N CCACATGGGGCTG . 51 3 33 0 . 0 FSD1 79187 hgsc.bcm.edu;bcgsc.ca 37 19 4323106 4323106 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_024333 exon11 c.C1163T p.A388V AGACGGCCGCCTC . 50 4 35 0 . . H2BFM 286436 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 103294757 103294757 + Missense_Mutation SNP C C A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001164416 exon1 c.C214A p.H72N CAGGTTCACCAGG . 57 5 70 0 . . CHST2 9435 hgsc.bcm.edu 37 3 142840192 142840192 + Silent SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 CHST2,colon,adenoma,0,1 CHST2 NM_004267 exon2 c.G534A p.S178S CTCGTCGTTCTTC . 37 3 47 0 . 0 RPRD2 23248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 150445250 150445250 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_015203 exon11 c.C3826T p.P1276S CCCCCTCCTGGGG . 79 21 65 0 . . SMARCC1 6599 hgsc.bcm.edu 37 3 47716999 47716999 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 SMARCC1,NS,carcinoma,0,1 SMARCC1 NM_003074 exon18 c.G1805A p.R602H TCAGTACGGAGAC . 55 3 52 0 . 0 ACP2 53 hgsc.bcm.edu 37 11 47264423 47264423 + Missense_Mutation SNP C C A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 ACP2,colon,carcinoma,0,1 ACP2 NM_001610 exon10 c.G989T p.R330L TCGTTCCGAAAGT . 29 2 29 0 . 0 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 1247459 1247459 + Missense_Mutation SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_002458 exon3 c.G152A p.R51Q CCACCCGGCGCGT . 104 38 85 0 . . USP13 8975 hgsc.bcm.edu 37 3 179458119 179458119 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 USP13,bladder,carcinoma,0,1 USP13 NM_003940 exon11 c.G1339T p.D447Y CAGCAAGATGCCC . 30 2 29 0 . 0 FANCI 55215 hgsc.bcm.edu 37 15 89856160 89856160 + Missense_Mutation SNP C C T rs367665900 TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . NM_001113378 exon35 c.C3677T p.T1226M ACTATACGGGAGA . 84 4 95 0 . . AASS 10157 hgsc.bcm.edu 37 7 121755176 121755176 + Missense_Mutation SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 AASS,NS,adenocarcinoma,0,1 AASS NM_005763 exon9 c.G995A p.G332D AACTTGCCCGGAG . 65 3 89 0 . 0 ESPNP 0 broad.mit.edu 37 1 17018952 17018952 + RNA DEL C C - novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . GAGGCGCGGCGGG . 11 3 13 0 . . AGAP6 414189 broad.mit.edu 37 10 51768543 51768543 + Missense_Mutation SNP T T C rs76153144 TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 AGAP6,NS,carcinoma,0,3 AGAP6 NM_001077665 exon8 c.T658C p.S220P ATTCCATCGACTC . 335 4 222 1 T|0.500;C|0.500 53 . 0 broad.mit.edu 37 14 24403643 24403643 + RNA SNP G G T rs200528830 alternate_allele TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . AGTGGGGAACATG . 40 3 54 0 G|0.996;A|0.004 . GOLGA6B 55889 broad.mit.edu 37 15 72954652 72954652 + Missense_Mutation SNP G G A rs201023176 TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . GOLGA6B NM_018652 exon11 c.G907A p.E303K CAAGATGAGGCCA . 59 5 51 1 G|0.998;A|0.002 30 C16orf59 80178 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2510831 2510831 + Missense_Mutation SNP C C G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . C16orf59 NM_025108 exon4 c.C211G p.P71A CCCAGTCCACAAG . 43 5 42 0 . 13 . 0 broad.mit.edu 37 16 90234762 90234762 + RNA SNP A A G rs74502094 TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . CTGGTTAGAGAAC . 59 4 83 1 G|1.000;|0.000 . CDRT15P1 0 broad.mit.edu 37 17 13927849 13927849 + RNA SNP T T C rs200545546 bycluster TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . TGCTTCTCCACTT . 28 4 21 0 . . MLLT6 0 broad.mit.edu 37 17 36861675 36861675 + RNA DEL G G - novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . MLLT6 . . . . CACGGCGGGGGGG . 5 2 5 0 . 80 KCNN1 0 broad.mit.edu 37 19 18092607 18092607 + RNA SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . KCNN1 NM_002248 exon5 c.C588T p.C196C AGTGTGCGCCATT . 42 4 49 1 . 74 SDHAP1 0 broad.mit.edu 37 3 195690535 195690539 + RNA DEL TGCTT TGCTT - rs369282394 bycluster TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . TCTCAGTGCTTTG . 9 2 9 0 . . CARD6 84674 broad.mit.edu 37 5 40841684 40841684 + Missense_Mutation SNP A A G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . CARD6 NM_032587 exon1 c.A200G p.K67R AGAAAAAGGGAGA . 85 5 76 1 . 141 . 0 broad.mit.edu 37 5 177386808 177386808 + RNA DEL T T - novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . TCCTCCTTTTTTT . 6 1 4 0 . . BTN3A1 0 broad.mit.edu 37 6 26408115 26408115 + Missense_Mutation SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . BTN3A1 NM_007048 exon4 c.G650A p.G217D GGGAGGGTGTATC . 44 3 50 0 . 80 MLL3 58508 broad.mit.edu 37 7 151945305 151945305 + Missense_Mutation SNP G G C novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . MLL3 NM_170606 exon14 c.C2214G p.D738E TTCAGAGTCCATC . 51 6 62 1 . 1564 POLR2J4 0 broad.mit.edu 37 7 44040390 44040394 + RNA DEL CAAAA CAAAA - rs373526685 TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . CTGTGTCAAAACA . 7 2 5 0 . . TUBBP5 0 broad.mit.edu 37 9 141069208 141069208 + RNA SNP G G A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . GATTTAGTCTTAC . 57 7 37 0 . . COL4A5 1287 broad.mit.edu 37 X 107842054 107842054 + Silent SNP A A G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . COL4A5 NM_000495 exon25 c.A1902G p.K634K TGAAAAAGGCATA . 98 3 90 1 . 262 NUDT10 170685 broad.mit.edu 37 X 51076024 51076024 + Silent SNP G G A rs2801626 TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . NUDT10 NM_153183 exon2 c.G207A p.E69E CGAAGAGGCGGGA . 107 6 91 1 . 28 MST1 4485 ucsc.edu 37 3 49725034 49725034 + Missense_Mutation SNP T T A rs142964215 TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . MST1 NM_020998 exon3 c.A310T p.T104S GCCTCGTGTGGGG . 56 12 65 5 . 84 MUC17 140453 ucsc.edu 37 7 100681474 100681474 + Silent SNP A A G novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 A A Unknown Untested Somatic WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . MUC17 NM_001040105 exon3 c.A6777G p.S2259S CACTTCATCTCCT . 72 14 58 1 . 804 MUC17 140453 ucsc.edu 37 7 100681510 100681510 + Silent SNP T T C rs116767656 TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . MUC17 NM_001040105 exon3 c.T6813C p.T2271T ACCAACTTCAACT . 72 19 56 2 . 804 COL4A1 1282 ucsc.edu;bcgsc.ca 37 13 110850904 110850904 + Missense_Mutation SNP G G T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . COL4A1 NM_001845 exon21 c.C1195A p.P399T TACCAGGAAATCC . 29 4 37 0 . 372 SHANK1 50944 ucsc.edu 37 19 51165465 51165465 + Silent SNP C C T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . SHANK1 NM_016148 exon23 c.G6243A p.L2081L CGAGAGCAGGCGG . 36 4 21 0 . 210 CROCCP2 84809 bcgsc.ca 37 1 16952872 16952872 + RNA SNP C A A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . CAGATCCAACTTG . 67 4 88 0 . . NRD1 4898 bcgsc.ca 37 1 52276063 52276063 + Missense_Mutation SNP G T T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . NRD1 NM_002525 exon18 c.C1997A p.A666D TTCAAGGCTTCAC . 89 4 88 1 . 89 . 728841 bcgsc.ca 37 1 144598726 144598726 + RNA SNP A C C novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . CGGTGCACCAAGA . 30 8 38 2 . . LAMC1 3915 bcgsc.ca 37 1 183093839 183093839 + Silent SNP C T T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . LAMC1 NM_002293 exon14 c.C2475T p.C825C ACTTTGCCGCCTG . 54 4 39 0 . 176 . 0 bcgsc.ca 37 2 203019494 203019494 + Silent SNP C T T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . ATTTTACACGCGC . 34 4 42 0 . . RBM5 10181 bcgsc.ca 37 3 50143035 50143035 + Missense_Mutation SNP G T T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . RBM5 NM_005778 exon10 c.G748T p.A250S ATGACAGCACTGT . 43 4 58 1 . 76 FNDC1 84624 bcgsc.ca 37 6 159646709 159646709 + Missense_Mutation SNP G T T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . FNDC1 NM_032532 exon8 c.G1027T p.D343Y GAAAGAGATGGCA . 19 3 29 0 . 250 . 0 bcgsc.ca 37 9 93505214 93505214 + RNA SNP A C C novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . CAGGTCATTTGTA . 41 5 40 0 . . . 283463 bcgsc.ca 37 12 40840366 40840366 + Silent SNP C T T novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . . . . . . TGAGTGCAGCTGT . 84 4 75 0 . . RYR3 6263 bcgsc.ca 37 15 33765642 33765642 + Missense_Mutation SNP G A A novel TCGA-W5-AA2Z-01A-11D-A417-09 TCGA-W5-AA2Z-11A-11D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b68bdaab-f992-4533-be20-4b56b7dc9031 354bfffb-4959-49d7-b276-66342e562181 . RYR3 NM_001243996 exon2 c.G74A p.C25Y TCCAGTGCATCGC . 20 3 36 0 . 760