Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq PTEN 5728 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 89720806 89720806 + Frame_Shift_Del DEL T T - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc .,6 . NM_000314 exon8 c.956delC p.T319fs ACTTACTTTAACA . 61 16 112 0 . 3652 WNK4 65266 hgsc.bcm.edu 37 17 40946837 40946838 + Frame_Shift_Ins INS - - TC novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032387 exon14 c.2398_2399insTC p.F800fs ACAGCCTTCTCCA . 39 0 56 0 . . PBRM1 55193 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 52712524 52712533 + Frame_Shift_Del DEL TGGTGCCCTA TGGTGCCCTA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 TGGTGCCCTA TGGTGCCCTA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018313 exon3 c.220_229del p.74_77del TCGCTTTGGTGCC . 28 14 71 0 . . DCUN1D3 123879 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 20871607 20871607 + Frame_Shift_Del DEL T T - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_173475 exon3 c.517delG p.A173fs TTTGGCTTCTGTT . 38 21 57 0 . . GIMAP8 155038 hgsc.bcm.edu 37 7 150174405 150174406 + Frame_Shift_Ins INS - - C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_175571 exon5 c.1535_1536insC p.E512fs TAGAAGAGGAGGT . 34 14 63 0 . . SAE1 10055 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 47712448 47712450 + In_Frame_Del DEL CTT CTT - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CTT CTT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005500 exon9 c.980_982del p.327_328del CAACAACTTCTTC . 37 13 57 0 . . STK11IP 114790 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 220474091 220474091 + Frame_Shift_Del DEL C C - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_052902 exon17 c.1965delG p.L655fs GAGCTGCTTGCCG . 62 25 74 0 . . P4HA2 8974 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 131530672 131530672 + Frame_Shift_Del DEL C C - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004199 exon14 c.1485delT p.G495fs TAGTCACCTTCCC . 45 26 48 0 . . KIAA1109 84162 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 123168345 123168360 + Frame_Shift_Del DEL AACCTGGTAGAACATC AACCTGGTAGAACATC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 AACCTGGTAGAACATC AACCTGGTAGAACATC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015312 exon33 c.5344_5359del p.1782_1787del ATGCAGAACCTGG . 34 16 161 0 . . GC 2638 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 72629209 72629228 + In_Frame_Del DEL AGCTGGAGTCTCTAGAAAAC AGCTGGAGTCTCTAGAAAAC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 AGCTGGAGTCTCTAGAAAAC AGCTGGAGTCTCTAGAAAAC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001204307 exon7 c.664_675del p.222_225del TGTTTAAGCTGGA . 24 11 71 0 . . APBB3 10307 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 139938329 139938329 + Frame_Shift_Del DEL C C - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006051 exon12 c.1324delC p.L442fs CTTGAGCCGCAGG . 33 12 34 0 . . DAZAP1 26528 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 1428934 1428956 + Frame_Shift_Del DEL GCTGCCAATGGCTGGGCAGGCCA GCTGCCAATGGCTGGGCAGGCCA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GCTGCCAATGGCTGGGCAGGCCA GCTGCCAATGGCTGGGCAGGCCA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018959 exon8 c.639_661del p.213_221del CCCAACGCTGCCA . 90 14 142 0 . . APBB3 10307 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 139938337 139938338 + Frame_Shift_Del DEL GG GG - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GG GG . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006051 exon12 c.1315_1316del p.439_439del GCAGGCGGGCACG . 25 12 34 0 . . ALB 213 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 74274503 74274507 + Frame_Shift_Del DEL GAAGA GAAGA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GAAGA GAAGA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000477 exon4 c.462_466del p.154_156del GACAATGAAGAGA . 26 13 70 0 . . GIMAP8 155038 hgsc.bcm.edu 37 7 150174406 150174407 + Frame_Shift_Ins INS - - A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_175571 exon5 c.1536_1537insA p.E512fs AGAAGAGGAGGTC . 35 14 64 0 . . UGT2B15 7366 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 69520862 69520862 + Frame_Shift_Del DEL T T - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001076 exon4 c.1045delG p.G349fs GGAACCTAAAGTA . 53 35 146 0 . . GIGYF2 26058 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 233660789 233660809 + In_Frame_Del DEL GGCTTATCTCCAAGACAGTGC GGCTTATCTCCAAGACAGTGC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GGCTTATCTCCAAGACAGTGC GGCTTATCTCCAAGACAGTGC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001103147 exon16 c.1559_1579del p.520_527del AATGGTGGCTTAT . 29 11 67 0 . . GUSB 2990 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 65425957 65425973 + Frame_Shift_Del DEL TTCCAGTATCTCTCTCG TTCCAGTATCTCTCTCG - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 TTCCAGTATCTCTCTCG TTCCAGTATCTCTCTCG . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc GUSB,NS,carcinoma,0,1 GUSB NM_000181 exon12 c.1868_1884del p.623_628del GCAATCTTCCAGT . 47 11 113 0 . 0 FCGR1B 2210 hgsc.bcm.edu;broad.mit.edu 37 1 120934442 120934442 + Frame_Shift_Del DEL T T - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001244910 exon3 c.247delT p.Y83fs CCTGTATTCACCA . 87 14 136 0 . . VPS41 27072 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 38860830 38860830 + Frame_Shift_Del DEL A A - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014396 exon6 c.358delC p.H120fs CTCGTGAAATTCT . 49 21 65 0 . . CYP3A5 1577 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 99247826 99247826 + Frame_Shift_Del DEL G G - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000777 exon12 c.1284delT p.P428fs ATGTAAGGATCTA . 61 22 121 0 . . ELMOD1 55531 hgsc.bcm.edu 37 11 107518233 107518234 + In_Frame_Ins INS - - GGATTTCTA novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018712 exon7 c.460_461insGGATTTCTA p.R154delinsRISR GAATCTCGGATTT . 54 0 98 0 . . APBB3 10307 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 139938333 139938335 + In_Frame_Del DEL AGG AGG - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 AGG AGG . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006051 exon12 c.1318_1320del p.440_440del AGCCGCAGGCGGG . 25 12 34 0 . . IPO13 9670 hgsc.bcm.edu 37 1 44423802 44423803 + In_Frame_Ins INS - - TGC novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014652 exon8 c.1694_1695insTGC p.Y565delinsYA CTCCCTATGCTGC . 30 10 27 0 . . ZNF721 170960 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 435664 435674 + Frame_Shift_Del DEL GGGTTTCTCTC GGGTTTCTCTC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GGGTTTCTCTC GGGTTTCTCTC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_133474 exon3 c.2583_2593del p.861_865del TGTGTAGGGTTTC . 51 13 85 0 . . PRDM9 56979 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 23527639 23527654 + Frame_Shift_Del DEL CAATAAGTCACACCTC CAATAAGTCACACCTC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CAATAAGTCACACCTC CAATAAGTCACACCTC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020227 exon11 c.2441_2456del p.814_819del CTTTAGCAATAAG . 69 16 95 0 . . SLC12A7 10723 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 1093708 1093730 + Frame_Shift_Del DEL GTTGGTGTAGTTGGCCAGCTTGT GTTGGTGTAGTTGGCCAGCTTGT - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GTTGGTGTAGTTGGCCAGCTTGT GTTGGTGTAGTTGGCCAGCTTGT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006598 exon3 c.261_283del p.87_95del GCTCAGGTTGGTG . 26 10 56 0 . . CYP3A5 1577 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 99247829 99247829 + Frame_Shift_Del DEL T T - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000777 exon12 c.1281delT p.D427fs TAAGGATCTATGC . 62 22 117 0 . . NDUFA13 51079 hgsc.bcm.edu 37 19 19638817 19638818 + Frame_Shift_Ins INS - - G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015965 exon5 c.317_318insG p.V106fs CACAGGTGGGGGA . 52 12 89 0 . . PEAK1 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 77450866 77450885 + Frame_Shift_Del DEL TACAAGGGTTCGGGTCCATA TACAAGGGTTCGGGTCCATA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 TACAAGGGTTCGGGTCCATA TACAAGGGTTCGGGTCCATA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024776 exon6 c.3292_3311del p.1098_1104del TTGCACTACAAGG . 47 13 86 0 . . TEX2 55852 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 62272276 62272283 + Frame_Shift_Del DEL GATTTTCT GATTTTCT - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GATTTTCT GATTTTCT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018469 exon3 c.1818_1825del p.606_609del GTCATAGATTTTC . 37 11 68 0 . . CYP3A5 1577 hgsc.bcm.edu 37 7 99247827 99247829 + In_Frame_Del DEL GAT GAT - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GAT GAT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000777 exon12 c.1281_1283del p.427_428del TGTAAGGATCTAT . 61 0 123 0 . . PRDX1 5052 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 45984678 45984687 + Frame_Shift_Del DEL GGGGCAGGGT GGGGCAGGGT - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GGGGCAGGGT GGGGCAGGGT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_181696 exon2 c.30_39del p.10_13del AAGTTGGGGGCAG . 49 10 100 0 . . TGFBR2 7048 hgsc.bcm.edu;bcgsc.ca 37 3 30664759 30664775 + Frame_Shift_Del DEL AGACATAGTAAAGTATC AGACATAGTAAAGTATC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 AGACATAGTAAAGTATC AGACATAGTAAAGTATC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001024847 exon2 c.162_169del p.54_57del CCACTGAGACATA . 20 4 99 0 . . BAIAP3 8938 hgsc.bcm.edu 37 16 1393405 1393430 + Frame_Shift_Del DEL TCAGCAGCCGCCACCATCAAACCTGC TCAGCAGCCGCCACCATCAAACCTGC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 TCAGCAGCCGCCACCATCAAACCTGC TCAGCAGCCGCCACCATCAAACCTGC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003933 exon15 c.1381_1406del p.461_469del GGCAGGTCAGCAG . 50 0 95 0 . . ZNF720 124411 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 31734032 31734052 + In_Frame_Del DEL GGGATGTGATGTTAGAGAACT GGGATGTGATGTTAGAGAACT - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GGGATGTGATGTTAGAGAACT GGGATGTGATGTTAGAGAACT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001130913 exon2 c.88_108del p.30_36del TATATGGGGATGT . 62 0 117 0 . . ACADVL 37 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 7124970 7124983 + Frame_Shift_Del DEL GAAAGAAAAATACC GAAAGAAAAATACC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GAAAGAAAAATACC GAAAGAAAAATACC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001270447 exon8 c.659_672del p.220_224del GGCCCAGAAAGAA . 20 9 41 0 . . TBC1D10B 26000 hgsc.bcm.edu;broad.mit.edu 37 16 30369466 30369486 + In_Frame_Del DEL CCGCTCCTTCTCCTGTTTCTG CCGCTCCTTCTCCTGTTTCTG - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CCGCTCCTTCTCCTGTTTCTG CCGCTCCTTCTCCTGTTTCTG . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015527 exon9 c.2207_2227del p.736_743del CTTCTCCCGCTCC . 58 2 77 0 . . R3HDM2 22864 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 57682695 57682711 + Splice_Site DEL TGTTGGTTAACATCAAA TGTTGGTTAACATCAAA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 TGTTGGTTAACATCAAA TGTTGGTTAACATCAAA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AGAGTCTGTTGGT . 44 6 90 0 . . ATF6B 1388 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 32086802 32086813 + In_Frame_Del DEL CAGTACTGCTTG CAGTACTGCTTG - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CAGTACTGCTTG CAGTACTGCTTG . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004381 exon10 c.1073_1084del p.358_362del GTCAGCCAGTACT . 44 19 58 0 . . HNRNPU-AS1 284702 hgsc.bcm.edu 37 1 245006151 245006152 + RNA INS - - A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TCCTAATAAAAAA . 33 18 25 0 . . MPDZ 8777 hgsc.bcm.edu;bcgsc.ca 37 9 13175817 13175837 + In_Frame_Del DEL GCATGACACACTCAGCATTAC GCATGACACACTCAGCATTAC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GCATGACACACTCAGCATTAC GCATGACACACTCAGCATTAC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001261406 exon21 c.2970_2990del p.990_997del TTTGAAGCATGAC . 42 0 84 0 . . CDKN1A 1026 hgsc.bcm.edu 37 6 36652119 36652192 + Frame_Shift_Del DEL GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC GGGCCCCGGCGAGGCCGGGATGAGTTGGGAGGAGGCAGGCGGCCTGGCACCTCACCTGCTCTGCTGCAGGGGAC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000389 exon2 c.240_313del p.80_105del CCCACGGGGCCCC . 35 0 37 0 . . SENP2 59343 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 185329428 185329449 + Frame_Shift_Del DEL GTGTTTCTAAGTTCTCAAAGAA GTGTTTCTAAGTTCTCAAAGAA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GTGTTTCTAAGTTCTCAAAGAA GTGTTTCTAAGTTCTCAAAGAA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021627 exon8 c.723_732del p.241_244del CTTTTTGTGTTTC . 38 8 58 0 . . PDE4DIP 9659 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 144922029 144922029 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001002811 exon5 c.C1489G p.P497A GAGCTGGAGAAGT . 65 11 75 0 . . PRDM13 59336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 100062584 100062584 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021620 exon4 c.A2073G p.T691T CTTCACAGACGAC . 11 6 14 0 . . FSTL4 23105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 132561381 132561381 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015082 exon9 c.A1146C p.S382S CTGAGTTGAGACA . 63 33 90 0 . . LIMD1-AS1 644714 hgsc.bcm.edu;ucsc.edu 37 3 45719739 45719739 + RNA SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CTTCACCAAATCA . 23 14 74 0 . . SETX 23064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 135204542 135204542 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015046 exon10 c.T2443G p.L815V CAGTCAAATTTTC . 10 5 13 0 . . ABCC3 8714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 48745811 48745811 + Silent SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003786 exon14 c.G1803C p.R601R GAAACGGATCCAG . 46 16 82 0 . . ISL2 64843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 76632810 76632810 + Silent SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_145805 exon4 c.C705A p.I235I GGTCATCCGCGTC . 63 21 71 0 . . RCOR1 23186 hgsc.bcm.edu 37 14 103173699 103173699 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015156 exon5 c.G510A p.M170I TGGGATGCTCTTC . 45 3 69 0 . . XYLB 9942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 38401886 38401886 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005108 exon3 c.T197G p.L66R CAGTACTAATGTG . 13 11 37 0 . . UROD 7389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 45478646 45478646 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000374 exon2 c.T88G p.Y30D ACAGACTACACTC . 26 11 72 0 . . IL33 90865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 6254494 6254494 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_033439 exon7 c.A553C p.T185P ATGGTAACCCTGA . 34 16 73 0 . . SKP2 6502 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 36181926 36181926 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005983 exon10 c.T1068G p.L356L TGAACTTGGAGAA . 95 18 72 0 . . PPP1R3C 5507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 93390426 93390426 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005398 exon2 c.A212G p.Q71R TCATTCTGTGATT . 51 29 88 0 . . MALAT1 378938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 65268625 65268625 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTTACTTCCTCAC . 47 26 91 0 . . C1S 716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 7177759 7177759 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_201442 exon12 c.G1871A p.G624D AGAAGGGCATGGA . 46 27 94 0 . . AGO3 192669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 36506015 36506015 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024852 exon16 c.A2145C p.R715R CACTCGATTATTT . 45 17 59 0 . . MYO7A 4647 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 76885944 76885944 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001127179 exon17 c.A2078C p.K693T GTGTGAAGCCGGC . 35 13 25 0 . . MEIS2 4212 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 37329152 37329152 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_170676 exon8 c.T763G p.L255V TGTCTAAACCATC . 45 16 80 0 . . RREB1 6239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 7249158 7249158 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001003699 exon13 c.T5186G p.L1729R CAATCCTGGCCAC . 28 14 45 0 . . CPSF1 29894 hgsc.bcm.edu;bcgsc.ca 37 8 145623960 145623960 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_013291 exon18 c.C1707T p.G569G TCTGCGGCCGTCG . 71 4 97 0 . . RHPN1 114822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 144462004 144462004 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_052924 exon9 c.A951G p.A317A GGTGGCAGCCGAG . 37 20 45 0 . . SNED1 25992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 242008393 242008393 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001080437 exon23 c.C3262A p.H1088N GAGGAGCACCCCA . 70 27 73 0 . . SLC25A27 9481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 46630146 46630146 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001204051 exon4 c.T417G p.V139V TGGTGTTATTGGC . 67 15 71 0 . . ATP9B 374868 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 76903819 76903819 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_198531 exon6 c.A685T p.S229C GTTAAGAGTTCAG . 63 27 129 0 . . ZBED4 9889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 50278233 50278233 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014838 exon2 c.A923T p.H308L GCATTCACTGCAT . 17 7 27 0 . . SPAG4 6676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 34205495 34205495 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003116 exon3 c.G463T p.V155F GTGCTGGTCAGCA . 22 10 48 0 . . KDM3A 55818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 86697428 86697428 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001146688 exon11 c.G1621A p.A541T ATCGTGGCACAGT . 53 19 86 0 . . GALNT4 8693 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 89916734 89916734 + Nonsense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003774 exon1 c.G1593A p.W531X AAAATGCCAAATA . 39 18 57 0 . . TTL 150465 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 113258837 113258837 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153712 exon4 c.A524C p.N175T TAGACAACCAGGG . 123 54 240 0 . . GNN 0 hgsc.bcm.edu 37 12 104264191 104264191 + RNA SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AGCACTAGAATGG . 29 15 56 0 . . TMTC4 84899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 101320946 101320946 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc TMTC4,NS,carcinoma,0,1 TMTC4 NM_032813 exon3 c.C106T p.L36F GAGGAAGAACAGA . 47 19 89 0 . 0 DDB2 1643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 47256429 47256429 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000107 exon6 c.T824G p.V275G GCCAGGTTAGAGG . 30 11 35 0 . . PANX1 24145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 93886741 93886741 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015368 exon2 c.A266T p.Q89L CTGTTCAGCAGAA . 27 14 43 0 . . EPB41L4A 64097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 111594968 111594968 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_022140 exon9 c.C753T p.H251H CTTGAAGTGAACC . 73 20 77 0 . . ATXN7L3B 552889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 74932077 74932077 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001136262 exon1 c.A185C p.Q62P GCATTCAGCCAGT . 37 14 71 0 . . TYRP1 7306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 12708981 12708981 + Silent SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000550 exon8 c.G1413T p.R471R AGGTCGGGAGTTT . 30 17 40 0 . . FBXO5 26271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 153296425 153296425 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012177 exon2 c.T435C p.S145S ATAGCCACTGTCT . 39 20 52 0 . . SMYD2 56950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 214503534 214503534 + Silent SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020197 exon8 c.C729A p.L243L TGATCTCCTGTAC . 157 34 100 0 . . RAD17 5884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 68680714 68680714 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_133339 exon5 c.T632A p.M211K TACAAATGCTTGG . 61 33 74 0 . . RUNDC3A 10900 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 42395541 42395541 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001144825 exon11 c.T1276G p.F426V GCGAGCTTCAAAT . 27 10 82 0 . . C9orf96 169436 hgsc.bcm.edu;bcgsc.ca 37 9 136270413 136270413 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153710 exon18 c.G1911A p.K637K TATGAAGGCCCTG . 6 4 17 0 . . RABGAP1 23637 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 125836700 125836700 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012197 exon17 c.T2246C p.L749S TGCTTTTATGTGA . 57 22 80 0 . . ST7-OT4 338069 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 116595119 116595119 + RNA SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CTTTTGAGTCTGT . 26 11 50 0 . . NDUFA13 51079 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 19638823 19638823 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015965 exon5 c.A323G p.E108G TGGGGGAGTCTGT . 53 18 89 0 . . MME 4311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 154858051 154858051 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007287 exon10 c.A927C p.Q309H GATCCAAAATAAC . 76 46 52 0 . . MAST1 22983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 12975632 12975632 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014975 exon13 c.G1376A p.C459Y GCGACTGTGCCAC . 29 10 44 0 . . APOL2 23780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 36624205 36624205 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_030882 exon5 c.C259T p.R87W TCAACCGAGGAAA . 30 12 43 0 . . KIAA0247 9766 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 70175521 70175521 + Missense_Mutation SNP G G A rs368679025 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014734 exon5 c.G586A p.V196I CCCAGAGTACAGA . 16 6 30 0 . . EXOC1 55763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 56759748 56759748 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018261 exon15 c.A1755G p.K585K GATTAAAATATTT . 28 16 61 0 . . TENM2 57451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 167671562 167671562 + Silent SNP C C T rs368288670 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ODZ2_ENST00000519204,NS,carcinoma,0,3 ODZ2_ENST00000519204 NM_001122679 exon26 c.C5631T p.S1877S CAGCAGCGGGCTG . 24 5 27 0 . 0 GCNT2 2651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 10621588 10621588 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_145649 exon4 c.T930C p.V310V AGGTGTTCCTGGC . 25 9 44 0 . . SKIDA1 387640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 21805461 21805461 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_207371 exon4 c.A1291G p.S431G CCCCGCTGCCCCC . 30 15 36 0 . . ZSWIM3 140831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 44506452 44506452 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_080752 exon2 c.T1255G p.F419V CTCTGCTTTGTGG . 26 10 47 0 . . TENM1 10178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 123805577 123805577 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001163278 exon6 c.A1124C p.Y375S GGAGAGTAAGTAG . 35 30 58 0 . . TAP1 6890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 32820888 32820888 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000593 exon1 c.C706T p.L236F CTAGAAGCCGACG . 43 12 50 0 . . SIPA1 6494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 65416935 65416935 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006747 exon10 c.T2509G p.S837A CAGAACTCGCTGT . 31 13 31 0 . . VPS41 27072 hgsc.bcm.edu 37 7 38791865 38791865 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014396 exon22 c.C1837A p.H613N TTTCATGGTAACG . 83 3 147 0 . . PAIP2 51247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 138700374 138700374 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001033112 exon3 c.T260G p.I87S ACCAAATCCAAGA . 49 17 60 0 . . SAMD4A 23034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 55169112 55169112 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015589 exon2 c.T529C p.Y177H CACTACTATCACC . 31 16 30 0 . . MIR9-3 407051 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 89911321 89911321 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ACCGAAAGTAGAA . 101 53 103 0 . . VWC2L 402117 hgsc.bcm.edu 37 2 215279158 215279158 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc VWC2L,NS,carcinoma,0,1 VWC2L NM_001080500 exon2 c.G241T p.D81Y GCTCTAGATGGAC . 68 3 91 0 . 0 ANKFY1 51479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 4098471 4098471 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001257999 exon10 c.C1300G p.L434V AATCTAGTCTGAA . 16 6 46 0 . . MARCH6 10299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 10433774 10433774 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005885 exon26 c.C2711T p.P904L CACCACCTCCACA . 114 87 79 0 . . IDE 3416 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 94223499 94223499 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004969 exon21 c.A2750G p.N917S TCAAAATTATATT . 46 21 79 0 . . MARCH2 51257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 8486775 8486775 + Silent SNP C C T rs368370666 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001005415 exon2 c.C51T p.S17S CTGCTCCGGCAGC . 47 21 67 0 . . SF3B1 23451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 198288622 198288622 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012433 exon2 c.T105G p.S35S ACCTGTAGAATCG . 39 19 67 0 . . AOX2P 344454 hgsc.bcm.edu 37 2 201642244 201642244 + RNA SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CACTTAAGAGGAG . 5 4 10 0 . . ATP6V1G1 9550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 117359886 117359886 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004888 exon3 c.G220A p.E74K GAAGTGGAGAAGG . 52 16 54 0 . . TYK2 7297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 10463198 10463198 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003331 exon23 c.A3230C p.K1077T TAGAACTTATACT . 36 14 67 0 . . EDEM2 55741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 33722567 33722567 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018217 exon6 c.T676C p.W226R TCTCCCAGAGGCG . 29 13 28 0 . . AOX1 316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 201478642 201478642 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001159 exon15 c.T1564C p.F522L ATCAGCTTCCTCT . 11 6 30 0 . . RUSC1-AS1 284618 hgsc.bcm.edu;ucsc.edu 37 1 155290956 155290956 + Silent SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001039517 exon2 c.C324A p.L108L AGGCTGGAGCCCG . 40 4 44 0 . . MYOM1 8736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 3067439 3067439 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003803 exon38 c.A4879T p.R1627W CGGTCCTCCCAGC . 27 11 59 0 . . DOCK10 55619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 225738772 225738772 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014689 exon11 c.G1198T p.A400S TGAGGGCTTTACA . 45 13 81 0 . . C9orf85 138241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 74526743 74526743 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_182505 exon1 c.G93A p.V31V AAGTGTGCAGACC . 34 16 47 0 . . SPRY4 81848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 141694180 141694180 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_030964 exon3 c.G563T p.C188F CATTTACACTTCC . 40 11 30 0 . . IPO11 51194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 61747688 61747688 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001134779 exon5 c.A564C p.L188F AGCATTACTTACC . 66 18 73 0 . . DOM3Z 1797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 31938791 31938791 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005510 exon3 c.G490T p.E164X CCACTTCACTCAG . 54 28 73 0 . . AHCYL1 10768 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 110555049 110555049 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006621 exon4 c.A442C p.I148L GCTAAAATAGTGG . 7 7 15 0 . . THSD7A 221981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 11419301 11419301 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015204 exon24 c.T4546A p.S1516T TACAAGACCTGTC . 48 20 70 0 . . CCDC170 80129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 151869440 151869440 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_025059 exon5 c.T590G p.L197R TTCAGCTTAGAGA . 91 44 91 0 . . C1QTNF3-AMACR 0 hgsc.bcm.edu 37 5 34004595 34004595 + RNA SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TCTTGTCTTCTTC . 48 6 43 0 . . RNPS1 10921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2314620 2314620 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006711 exon2 c.A25G p.K9E AGCTCTTCTTTTT . 26 16 18 0 . . DDX11 1663 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 31256769 31256769 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_030653 exon27 c.G2720A p.X907X CTTCCTGATGGGC . 48 25 65 0 . . PAIP2 51247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 138700372 138700372 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001033112 exon3 c.A258C p.Q86H GGACCAAATCCAA . 48 16 60 0 . . CHD8 57680 hgsc.bcm.edu 37 14 21896185 21896185 + Silent SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc CHD8,NS,carcinoma,0,1 CHD8 NM_001170629 exon3 c.C1444A p.R482R AGACTCGAGGTAT . 29 2 33 0 . 0 ATAD3B 83858 hgsc.bcm.edu 37 1 1417592 1417592 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ATAD3B_ENST00000378741,NS,carcinoma,0,2 ATAD3B_ENST00000378741 NM_031921 exon6 c.G589A p.A197T GCGCGCGCCAAGG . 53 3 68 0 . 0 ZNF569 148266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 37904939 37904939 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152484 exon6 c.T621C p.I207I AGTATGAATTCTC . 61 26 92 0 . . MIR600 693185 hgsc.bcm.edu;ucsc.edu 37 9 125873860 125873860 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TCTGTAAGTAACT . 37 17 41 0 . . C2CD2 25966 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 21 43327893 43327893 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015500 exon9 c.G1019A p.G340D AGCAGACCTGAAA . 27 4 80 0 . . CTSB 1508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 11704585 11704585 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_147780 exon10 c.T769G p.S257A AGTCCGAATACAC . 43 14 62 0 . . ELN 2006 hgsc.bcm.edu 37 7 73474785 73474785 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001081754 exon25 c.T1716C p.G572G TGCTGGTGTTCCT . 16 4 31 0 . . CYBB 1536 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 37653034 37653034 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000397 exon5 c.T454G p.Y152D GAAAGTTATCTCA . 25 20 33 0 . . SLC17A3 10786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 25850686 25850686 + Splice_Site SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006632 exon8 c.759+1G>A . TACTCACGTCTCT . 40 24 45 0 . . SYNCRIP 10492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 86351134 86351134 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006372 exon2 c.A24G p.G8G ACCATTTCCATTA . 56 28 66 0 . . MEX3C 51320 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 18 48703410 48703410 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016626 exon2 c.G1291A p.V431I GAGGAACAGGATT . 12 6 26 0 . . BCOR 54880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 39921601 39921601 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001123385 exon10 c.T4219C p.Y1407H GATCATAGTCCGA . 28 23 72 0 . . RABL6 55684 hgsc.bcm.edu 37 9 139734291 139734291 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001173988 exon13 c.C1907T p.A636V AGGAGGCCGGACC . 70 4 94 0 . . SVEP1 79987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 113205826 113205826 + Silent SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153366 exon27 c.T4638A p.P1546P CATACCAGGTATG . 20 5 31 0 . . STAT2 6773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 56743381 56743381 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005419 exon14 c.A1249T p.S417C TATTGCTGCCCTT . 34 13 50 0 . . ALG11 440138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 52598853 52598853 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001004127 exon3 c.G987A p.K329K TAAGAAGATGGTT . 38 17 60 0 . . ACSM2B 348158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 20554487 20554487 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_182617 exon12 c.G1379A p.G460E GCCCGTCCCATAA . 164 52 195 0 . . RALGPS2 55103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 178745908 178745908 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152663 exon2 c.A9C p.L3L GGACCTAATGAAC . 53 34 53 0 . . PYGM 5837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 64514795 64514795 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005609 exon18 c.A2213C p.E738A CGAAGCTCAGGAA . 21 13 23 0 . . DLL1 28514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 170597586 170597586 + Splice_Site SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005618 exon5 c.413-2A>C . GTTTTCTACGGGG . 28 11 33 0 . . YDJC 150223 hgsc.bcm.edu;bcgsc.ca 37 22 21982727 21982727 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001017964 exon5 c.C952A p.L318M GTTCCAGGAAGGG . 48 4 59 0 . . MTBP 27085 hgsc.bcm.edu 37 8 121519076 121519076 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc MTBP,NS,carcinoma,0,1 MTBP NM_022045 exon16 c.C1858T p.L620F GGAGATCTTCAAC . 66 3 83 0 . 0 TNC 3371 hgsc.bcm.edu 37 9 117797604 117797604 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc TNC,NS,malignant_melanoma,0,1 TNC NM_002160 exon22 c.C5666A p.S1889Y CTTGGAGAATCGA . 44 2 56 0 . 0 LINC00710 254312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 10989451 10989451 + RNA SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AACATCATTTGTA . 41 19 110 0 . . GPR98 84059 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 5 90079733 90079733 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032119 exon67 c.A13512C p.R4504S GAGCAGAATCATA . 66 21 91 0 . . ZC3H6 376940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 113079392 113079392 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_198581 exon8 c.A1036G p.K346E AACTGTAAATTTT . 73 38 125 0 . . HNRNPM 4670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 8527458 8527458 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_031203 exon3 c.A329C p.K110T AAGGAAAGTCAAG . 65 21 86 0 . . FLJ31813 0 hgsc.bcm.edu 37 10 51816497 51816497 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TATTAAAATGCTG . 102 49 216 0 . . ZNF526 116115 hgsc.bcm.edu 37 19 42729173 42729173 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ZNF526,NS,carcinoma,0,1 ZNF526 NM_133444 exon3 c.C618T p.C206C CCTCTGCGCCACC . 19 2 27 0 . 0 SYDE2 84144 hgsc.bcm.edu;broad.mit.edu 37 1 85666679 85666679 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032184 exon1 c.A1G p.M1V CGTGCATGGCCTG . 14 6 9 0 . . ZFYVE9 9372 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 52732359 52732359 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004799 exon6 c.A2311C p.S771R GCCTCAAGCCAGA . 57 19 69 0 . . PRKAB2 5565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 146639504 146639504 + Silent SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005399 exon3 c.G165C p.G55G TTTGTCCCCAGGG . 46 25 35 0 . . CSNK1G2-AS1 255193 hgsc.bcm.edu 37 19 1953510 1953510 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ATCTGAATTTTGG . 28 13 50 0 . . PIKFYVE 200576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 209189656 209189656 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015040 exon19 c.C2353G p.R785G ATCAGTCGAATGA . 54 19 79 0 . . ABI3 51225 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 47299925 47299925 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016428 exon8 c.T949C p.Y317H ACACTGTACCCAT . 24 10 32 0 . . SLC3A2 6520 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 62649510 62649510 + Missense_Mutation SNP C C A rs138578664 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001012662 exon5 c.C876A p.D292E TTTTGACAGTCTC . 44 16 60 0 . . OR2L2 26246 hgsc.bcm.edu 37 1 248202347 248202347 + Missense_Mutation SNP C C T rs143360089 bycluster TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc OR2L2,right_upper_lobe,carcinoma,0,2 OR2L2 NM_001004686 exon1 c.C778T p.R260C TATGTACGTCCAA . 71 3 76 0 0.000 0 CTC1 80169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 8140773 8140773 + Nonsense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_025099 exon5 c.A712T p.K238X TACTTTTCACCAG . 29 13 66 0 . . CTTNBP2NL 55917 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 112999663 112999663 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018704 exon6 c.G1549T p.G517W CAACAAGGGCCAA . 9 6 46 0 . . MAGEH1 28986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 55479371 55479371 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014061 exon1 c.T564G p.S188S ATGCTCTAAAGAC . 15 14 30 0 . . TTC39C 125488 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 21694602 21694602 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001135993 exon7 c.T1069A p.Y357N TGTCTGTATGAAA . 37 16 59 0 . . RFWD3 55159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 74670304 74670304 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018124 exon8 c.T1366G p.C456G CATCACAGTATGC . 37 19 52 0 . . COPA 1314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 160263008 160263008 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001098398 exon27 c.C2798A p.S933Y AGCTGAGAGTTAT . 103 66 89 0 . . MIR3680-1 100500917 hgsc.bcm.edu 37 11 63304427 63304427 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCAGGCTCCTGGC . 29 15 50 0 . . RAPSN 5913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 47464331 47464331 + Silent SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032645 exon3 c.G567C p.A189A CTCTGCCGCCTTG . 25 12 47 0 . . PCDHGB1 56104 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140730180 140730180 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018922 exon1 c.T353C p.V118A TGGTTGTTGTAAT . 61 16 63 0 . . DNAJC14 85406 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 56215774 56215774 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032364 exon7 c.C2096T p.P699L TGGAAGGGCCTCC . 38 18 47 0 . . ZNF821 55565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 71901864 71901864 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001201556 exon4 c.C117T p.G39G CTGACTGCCAAGG . 20 5 36 0 . . ZNF850 342892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 37241073 37241073 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001193552 exon5 c.T869G p.F290C GAAGTAAAAGATT . 63 22 105 0 . . ZNF354A 6940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 178154001 178154001 + Silent SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005649 exon3 c.G159C p.L53L CTTACCCAGTGAG . 97 56 138 0 . . EIF4E2 9470 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 233422641 233422641 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004846 exon3 c.T183G p.T61T CTACACTTTTTGG . 34 15 60 0 . . PDZD2 23037 hgsc.bcm.edu 37 5 31983419 31983419 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_178140 exon2 c.A635G p.K212R CGAAAAAGGGGAA . 100 4 82 0 . . IGF2BP2 10644 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 185542734 185542734 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001007225 exon1 c.T15G p.L5L GATGTAAAGCTTG . 112 31 136 0 . . BEND3P3 650623 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 81444371 81444371 + RNA SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GGAGATCCCCAGC . 33 14 38 0 . . CCBE1 147372 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 57106936 57106936 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_133459 exon8 c.C888A p.H296Q CTTAATGTGGGAC . 37 4 48 0 . . PHF20L1 51105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 133858086 133858086 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016018 exon21 c.T2972C p.L991S CAAGATTGCCCCA . 19 7 65 0 . . ZNF134 7693 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 58132575 58132575 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003435 exon3 c.A1088T p.Q363L CACACCAGAGGGT . 40 20 75 0 . . FER1L6 654463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 125110056 125110056 + Silent SNP T T G rs372723456 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001039112 exon37 c.T4815G p.T1605T GAACACTGAAGAT . 36 16 50 0 . . CDH13 1012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 83816933 83816933 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001220488 exon14 c.T2131G p.S711A ACAGATTCAGGGA . 44 24 65 0 . . DGAT1 8694 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 145541987 145541987 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012079 exon7 c.T613G p.F205V TGAGGAAGAGGAT . 19 6 30 0 . . RNU6-81 100873780 hgsc.bcm.edu;bcgsc.ca 37 2 132354664 132354664 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGCTGGAACATGG . 198 91 357 0 . . GOLGA3 2802 hgsc.bcm.edu 37 12 133351864 133351864 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc GOLGA3,NS,carcinoma,0,1 GOLGA3 NM_005895 exon22 c.C4006A p.Q1336K CTTCCTGGGCCAT . 43 2 48 0 . 0 AKR7L 246181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 19597309 19597309 + RNA SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCATGTAGATAGA . 27 10 47 0 . . UBR5 51366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 103299714 103299714 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015902 exon37 c.A4904C p.N1635T CTAGCATTATCTT . 26 10 26 0 . . PLXNA2 5362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 208200667 208200667 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_025179 exon32 c.A5606T p.E1869V TCCTGCTCTAGGG . 22 14 20 0 . . ANKFY1 51479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 4113218 4113218 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001257999 exon5 c.A609C p.L203L ATTCACTAGAGAC . 20 12 44 0 . . IRF6 3664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 209974658 209974658 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006147 exon3 c.A101C p.K34T AAGCGTTTAGAGT . 183 27 147 0 . . POR 5447 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 75615316 75615316 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000941 exon14 c.T1745A p.L582Q AGGAGCTGGCGCA . 9 4 26 0 . . DNAJC9 23234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 75006528 75006528 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015190 exon2 c.A239G p.E80G CCCTGCTCATCGT . 48 14 67 0 . . FAH 2184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 80464579 80464579 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000137 exon8 c.A695G p.N232S TTATGAACGACTG . 24 11 43 0 . . ZNF606 80095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 58491019 58491019 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_025027 exon7 c.C1029A p.N343K ATACTGGTTTTCT . 46 16 101 0 . . NOTCH4 4855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 32166895 32166895 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004557 exon24 c.C4343T p.P1448L AGCACAGGCCAGG . 25 8 23 0 . . MYH9 4627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 36717867 36717867 + Splice_Site SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002473 exon8 c.706-1G>T . TTTGCCCTAAGTA . 37 14 69 0 . . ENTPD1-AS1 0 hgsc.bcm.edu 37 10 97751346 97751346 + RNA SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TAACATGAAATAT . 56 20 84 0 . . BMS1P4 729096 hgsc.bcm.edu 37 10 75488004 75488004 + RNA SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTTGGTAAAAGCC . 54 15 119 0 . . AMBP 259 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 116840382 116840382 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001633 exon1 c.T108C p.N36N AGAGATATTGAAG . 19 9 36 0 . . DENND4C 55667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 19316816 19316816 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017925 exon12 c.G1786T p.D596Y GCTGCTGATTCAT . 28 13 42 0 . . ASPRV1 151516 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 70188309 70188309 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152792 exon1 c.C512T p.A171V CCAAAGGCCTTCA . 22 10 35 0 . . ATP7B 540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 52539138 52539138 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000053 exon5 c.A1739T p.H580L ATGTTGTGGACAC . 75 26 103 0 . . ZNF91 7644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 23544752 23544752 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003430 exon4 c.T1029G p.I343M AGTATGAATTCTC . 33 14 67 0 . . PLGLA 285189 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 107007431 107007431 + RNA SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AAAATGGCATCAC . 229 68 411 0 . . MLF1 4291 hgsc.bcm.edu 37 3 158315944 158315944 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001195432 exon6 c.G448T p.E150X GGAGATGAACCGC . 91 4 93 0 . . AHNAK 79026 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 62299800 62299800 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001620 exon5 c.A2089T p.I697F TGGAGATCTTTGG . 28 15 48 0 . . GUSB 2990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 65425890 65425890 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000181 exon12 c.T1950C p.F650F TCAAGTAAACAGG . 59 30 107 0 . . TMC4 147798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 54672203 54672203 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001145303 exon4 c.A664T p.T222S GCTGGGTGGCAAA . 39 13 68 0 . . ZSCAN32 54925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 3434880 3434880 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017810 exon5 c.T177C p.S59S AAATTGAGAACTA . 23 12 34 0 . . MAGED1 9500 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 51644872 51644872 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001005333 exon13 c.C2351A p.S784Y CCTGGTCCAGAAT . 28 27 36 0 . . TMEM184A 202915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 1587391 1587391 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001097620 exon8 c.G999A p.K333K ATTCTCCTTCTTC . 48 23 80 0 . . TCP11L1 55346 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 33094146 33094146 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001145541 exon10 c.G1454A p.R485H TTGCTCGCCTGGT . 45 10 67 0 . . ZNF529 57711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 37038201 37038201 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001145649 exon6 c.A1259C p.K420T TAGGGTTTTTCAC . 20 9 69 0 . . WHSC1L1 54904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 38205356 38205356 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017778 exon2 c.T334C p.Y112H AATGATAATAGTC . 68 28 96 0 . . RGS3 5998 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 116356551 116356551 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_144489 exon1 c.A352G p.T118A GGCCCTACAGAGA . 14 6 17 0 . . DRG2 1819 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 18009784 18009784 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001388 exon12 c.A992C p.K331T AGTTCAAGTACGC . 20 6 41 0 . . INTS10 55174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 19700398 19700398 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018142 exon14 c.T1679C p.I560T AGGCTATCATGCC . 34 16 71 0 . . JMJD1C 221037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 64968449 64968449 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032776 exon10 c.A2980C p.R994R AATGCCTATGTAA . 38 11 47 0 . . CTNND1 1500 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 57569260 57569260 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001085461 exon7 c.C1012T p.P338S TGGGCTCCTTTGG . 20 9 29 0 . . PROSER2-AS1 219731 hgsc.bcm.edu 37 10 11908455 11908455 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCCAACTTTGCTT . 16 8 29 0 . . STPG1 90529 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 24718155 24718155 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001199012 exon3 c.T85G p.Y29D TTGGATATGCAGC . 39 14 104 0 . . FCHO2 115548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 72378651 72378651 + Silent SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_138782 exon24 c.A2244T p.G748G AAATGGAGGTAAG . 105 63 140 0 . . TOP2A 7153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 38574040 38574040 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001067 exon1 c.G4A p.E2K ACACTTCCATGGT . 74 30 94 0 . . NPR2 4882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 35792667 35792667 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003995 exon1 c.A262G p.K88E GACCTCAAGCTGT . 41 12 68 0 . . ZNF410 57862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 74387683 74387683 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001242924 exon10 c.G1055A p.G352E TTTCAGGAGAGAA . 26 7 49 0 . . CDIPT 10423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 29874145 29874145 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006319 exon1 c.A34G p.N12D TGAGGTTGGGCAC . 23 11 43 0 . . UTP14C 9724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 52603174 52603174 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021645 exon2 c.A234C p.E78D TTCTGAAGGATCA . 60 27 87 0 . . TPCN1 53373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 113664590 113664590 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001143819 exon3 c.G149A p.R50K TTGAAAGGGAGCT . 33 11 29 0 . . OR51S1 119692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 4870320 4870320 + Missense_Mutation SNP A A C rs139571388 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001004758 exon1 c.T119G p.I40S ACAGCAATGAGGG . 25 8 44 0 . . NUDT22 84304 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 63994325 63994325 + Silent SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001128613 exon2 c.C201G p.T67T AGCCACCCTGGCG . 58 23 69 0 . . NUP98 4928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 3774605 3774605 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005387 exon11 c.T1259G p.F420C CTTCCAAAAATAC . 59 29 111 0 . . C19orf54 284325 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 41248653 41248653 + Silent SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_198476 exon6 c.T741A p.A247A GGGCACAGCCCGA . 26 15 12 0 . . MYOM1 8736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 3067473 3067473 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003803 exon38 c.A4845T p.S1615S GTCGTCTGAGGCC . 20 9 51 0 . . FBXO28 23219 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 224345385 224345385 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015176 exon5 c.A1044G p.R348R GAAACGAAAAAAG . 60 42 63 0 . . ASIC4 55515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 220397059 220397059 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_182847 exon4 c.G1259T p.W420L AGCCCTGGGGCAA . 12 6 34 0 . . CCDC83 220047 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 85630420 85630420 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_173556 exon12 c.T1202A p.V401E TGGGAGTGAAGCT . 70 30 87 0 . . SNX29 92017 hgsc.bcm.edu;ucsc.edu 37 16 12220546 12220546 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032167 exon12 c.G1459T p.E487X GAGGAGGAGAACA . 31 4 59 0 . . HK2 3099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 75100419 75100419 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000189 exon5 c.G512T p.W171L TCTCATGGACCAA . 35 19 37 0 . . FSHB 2488 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 30255127 30255127 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000510 exon3 c.A170G p.Y57C TGGTGTATAAGGA . 48 12 70 0 . . BMP4 652 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 54418732 54418732 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc BMP4,colon,carcinoma,0,2 BMP4 NM_130851 exon3 c.G209C p.R70P TGCGGGCGGCGGC . 25 15 32 0 . 0 UBXN4 23190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 136513166 136513166 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014607 exon5 c.T413G p.F138C CGTCATTTGAACC . 21 7 40 0 . . SIK1 150094 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 44845977 44845977 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_173354 exon2 c.G82C p.D28H CGATGTCGTAAAA . 44 31 82 0 . . NEK6 10783 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 127113221 127113221 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001166171 exon11 c.A1039G p.T347A TCCAGCACCTGAG . 23 12 29 0 . . LRRC37A6P 387646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 27538087 27538087 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TAGTCTTCTCCAG . 116 46 173 0 . . RHAG 6005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 49574864 49574864 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000324 exon8 c.A1137C p.T379T CTGACCTGTCATC . 39 29 66 0 . . ARSE 415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 2876371 2876371 + Silent SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000047 exon3 c.G129C p.L43L CGCCATCAGAAGA . 16 15 27 0 . . MIR302F 100302131 hgsc.bcm.edu 37 18 27878877 27878877 + RNA SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGTCTTCTGTGTA . 97 4 152 0 . . RBM10 8241 hgsc.bcm.edu 37 X 47030429 47030429 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001204468 exon4 c.T399C p.D133D CCAGGATTCCTAC . 10 8 6 0 . . SPINK5 11005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 147498034 147498034 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001127699 exon23 c.A2147T p.N716I TGAAAAATGGAAG . 70 12 79 0 . . BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 32678936 32678936 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc BIRC6_ENST00000421745,NS,carcinoma,0,2 BIRC6_ENST00000421745 NM_016252 exon23 c.T4679G p.L1560R CTGGACTTTTGGA . 63 25 115 0 . 0 PCF11 51585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 82877732 82877732 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015885 exon5 c.A1793C p.K598T GATGGAAATCTGG . 124 44 162 0 . . NRCAM 4897 hgsc.bcm.edu 37 7 107824716 107824716 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001037132 exon19 c.C2273A p.S758X GGCTCTGATCCCA . 51 4 77 0 . . UBE2F 140739 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 238934042 238934042 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_080678 exon6 c.A342G p.E114E AGGGGAAATATGT . 27 13 39 0 . . SNX14 57231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 86235879 86235879 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153816 exon21 c.A2072C p.Q691P AGAAATTGTGTTT . 69 19 57 0 . . SLC12A8 84561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 124826699 124826699 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024628 exon10 c.A1331T p.E444V GGTCCCTCAGAGC . 14 6 18 0 . . ZNF91 7644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 23544197 23544197 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003430 exon4 c.A1584G p.R528R GGATTGTCTAAAA . 43 21 88 0 . . VTRNA2-1 100126299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 135416270 135416270 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ACCGCTTGAGCTA . 22 13 33 0 . . IGSF9B 22997 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 133802005 133802005 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014987 exon8 c.C1071T p.V357V CCACTTGACCACG . 20 11 39 0 . . PPP4R1 9989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 9559465 9559465 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001042388 exon14 c.T1980G p.N660K GTGCCAATTCTGT . 29 15 33 0 . . SUPT20H 55578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 37583918 37583918 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001014286 exon26 c.C2231T p.A744V GCCATAGCCATTT . 39 21 76 0 . . B3GNT1 11041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 66114615 66114615 + Silent SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006876 exon1 c.G402T p.L134L CGTGGCCAGCTGC . 16 8 22 0 . . MRPL11 65003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 66203493 66203493 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016050 exon5 c.A564C p.E188D GGCAGCTTCTTCT . 28 8 40 0 . . PTPMT1 114971 hgsc.bcm.edu 37 11 47591273 47591273 + Nonsense_Mutation SNP G G T rs200800213 bycluster;alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc PTPMT1,NS,carcinoma,0,1 PTPMT1 NM_175732 exon3 c.G277T p.E93X GGAGTCGAGCAGC . 33 3 48 0 . 0 IRF6 3664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 209969704 209969704 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006147 exon4 c.T368G p.I123S TTAATGATCGAGC . 28 6 36 0 . . RBM4 5936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 66410945 66410945 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002896 exon3 c.C437T p.S146F AGTTGTCCACCAG . 33 14 43 0 . . COL4A3 1285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 228118346 228118346 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000091 exon13 c.A757G p.N253D CCAGATAACAGAA . 35 14 46 0 . . GATAD1 57798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 92078113 92078113 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021167 exon2 c.A297T p.K99N CACTAAATACAAA . 37 14 74 0 . . ERCC2 2068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 45855787 45855787 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ERCC2_ENST00000391945,bladder,carcinoma,0,1 ERCC2_ENST00000391945 NM_000400 exon21 c.G2023T p.G675C TGAGGCCGTAGTC . 43 21 44 0 . 0 ABCA13 154664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 48443439 48443439 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152701 exon39 c.G12033A p.R4011R CTCCCGGCATAGC . 36 15 50 0 . . TIMMDC1 51300 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 119217752 119217752 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016589 exon1 c.C172T p.L58F GACCGCCTCCGGG . 46 16 46 0 . . SYS1 90196 hgsc.bcm.edu;ucsc.edu 37 20 43996521 43996521 + RNA SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGACCAGGCACCC . 15 10 36 0 . . TPTE2P5 100616668 hgsc.bcm.edu 37 13 41438002 41438002 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCACACTTCTGAA . 14 5 26 0 . . PTK2 5747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 141669627 141669627 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005607 exon32 c.A3163C p.N1055H GTAAGTTTTTGGC . 21 9 45 0 . . CSMD2 114784 hgsc.bcm.edu 37 1 34285407 34285407 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc CSMD2_ENST00000373381,NS,malignant_melanoma,0,4 CSMD2_ENST00000373381 NM_052896 exon9 c.G1111A p.E371K AGCCCTCGTTGCA . 43 2 60 0 . 0 CP 1356 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 148899805 148899805 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000096 exon14 c.T2541G p.T847T TGTTGGAGTAACT . 57 35 82 0 . . RAPGEF2 9693 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 160262761 160262761 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014247 exon14 c.T2097G p.D699E TTCAGATGAAGAT . 15 9 39 0 . . SLC47A2 146802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 19606450 19606450 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152908 exon12 c.T1157G p.I386R ATGCTTATCAGGG . 27 10 68 0 . . OR2D3 120775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 6943064 6943064 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001004684 exon1 c.C832T p.P278S ATGCGACCAAACT . 41 17 57 0 . . FARP2 9855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 242433442 242433442 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014808 exon27 c.G3067A p.G1023R ATCCAGGGGGCCA . 49 19 57 0 . . EGR4 1961 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 73518868 73518868 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001965 exon2 c.G1487A p.R496H TCGGAGCGCGCAA . 12 6 22 0 . . C11orf52 91894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 111796729 111796729 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_080659 exon4 c.C178A p.Q60K CAGCAGCAAGGGT . 26 6 53 0 . . BIRC3 330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 102198793 102198793 + Missense_Mutation SNP T T G rs373892386 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001165 exon4 c.T964G p.L322V GAGTACTTGATAA . 42 14 52 0 . . IKZF5 64376 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 124758099 124758099 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001271840 exon3 c.T43A p.F15I CCTGAAAATCTTT . 60 22 78 0 . . MALAT1 378938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 65266585 65266585 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CAGATAAGTTTTT . 38 17 54 0 . . SUCO 51430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 172558420 172558420 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014283 exon18 c.C2179G p.Q727E CATTCTCAAACTC . 44 28 34 0 . . OR2A2 442361 hgsc.bcm.edu 37 7 143807373 143807373 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc OR2A2,colon,carcinoma,0,1 OR2A2 NM_001005480 exon1 c.G698A p.R233H AGGGCCGCATAAA . 31 2 59 0 . 0 LRRC8B 23507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 90049514 90049514 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015350 exon5 c.T1305C p.N435N AGACAATGTCTTT . 13 11 38 0 . . ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 31158612 31158612 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_030632 exon1 c.A17G p.K6R AGAGGAAGAAGAA . 110 41 176 0 . . ZNF542 147947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56888579 56888579 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GAAACCTTACAAA . 40 22 34 0 . . KIF14 9928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 200587439 200587439 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014875 exon2 c.T413G p.I138R GAATCTATTTCAG . 67 43 72 0 . . TBCEL 219899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 120957511 120957511 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001130047 exon8 c.T981C p.Y327Y TAAATATGGGAAG . 36 5 55 0 . . HOXA-AS3 100133311 hgsc.bcm.edu 37 7 27183301 27183301 + RNA SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ATTTATGATGAAT . 65 4 98 0 . . ELAVL1 1994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 8056616 8056616 + Silent SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001419 exon2 c.T84A p.P28P GTTCTGAGGGAGG . 52 21 67 0 . . BMP6 654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 7880449 7880449 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001718 exon7 c.A1415G p.Y472C CCGAGTATGTCCC . 54 30 72 0 . . DHX40 79665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 57643997 57643997 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024612 exon2 c.G122A p.G41E AGAAAGGATGCAC . 58 18 103 0 . . APBB3 10307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 139939978 139939978 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006051 exon11 c.C1165G p.R389G TCTGACGGCCCAG . 40 5 67 0 . . ZNF699 374879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 9407095 9407095 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_198535 exon5 c.C985T p.H329Y CACTGTGAATTCT . 33 17 59 0 . . AOX1 316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 201531474 201531474 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001159 exon32 c.A3608T p.Q1203L TAGGCCAGGTACG . 64 27 85 0 . . XPNPEP1 7511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 111643856 111643856 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001167604 exon9 c.T799C p.S267P CGTAGGAGAAAAA . 36 15 40 0 . . CYP4F22 126410 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 15651396 15651396 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_173483 exon8 c.C807T p.D269D CTGTGACATGGTG . 31 11 28 0 . . XKR4 114786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 56015562 56015562 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_052898 exon1 c.A514T p.S172C GATTTCAGCACCG . 23 11 22 0 . . ARID1B 57492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 157505453 157505453 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020732 exon13 c.A3434G p.Y1145C AGCAGTATATTCA . 80 25 81 0 . . KCNU1 157855 hgsc.bcm.edu 37 8 36675277 36675277 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001031836 exon10 c.G1105T p.E369X CTGGGAGAGTAAG . 86 5 119 0 . . ZNF281 23528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 200376559 200376559 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012482 exon2 c.T2275G p.L759V GTGTCAACTGCTG . 74 19 63 0 . . STAG2 10735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 123200253 123200253 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001042749 exon23 c.A2232C p.Q744H TTGGCAACTTGCT . 32 30 77 0 . . ZNF345 25850 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 19 37368144 37368144 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001242476 exon4 c.A412C p.R138R CATCAGAGAATTC . 35 12 74 0 . . BCYRN1 618 hgsc.bcm.edu 37 X 70787308 70787308 + RNA SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AAAAGGCAGATCT . 49 38 84 0 . . SRP54 6729 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 35468824 35468824 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003136 exon3 c.A139G p.K47E AATATTAAACTAG . 37 20 57 0 . . KIF1B 23095 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 10327609 10327609 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_183416 exon6 c.A601G p.K201E GGGAACAAAGCCA . 19 12 63 0 . . ZNF670-ZNF695 0 hgsc.bcm.edu 37 1 247130468 247130468 + RNA SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ACTCCCGACCTCA . 14 12 14 0 . . SDCCAG8 10806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 243663078 243663078 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006642 exon18 c.T2133A p.S711S ACAATCTGATTGC . 64 28 56 0 . . BSCL2 26580 hgsc.bcm.edu 37 11 62460156 62460156 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc BSCL2,NS,carcinoma,0,1 BSCL2 NM_001122955 exon5 c.C744T p.Y248Y GTCTGCGTAGAGT . 20 2 36 0 . 0 PAFAH1B2 5049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 117030734 117030734 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001184747 exon3 c.T166G p.Y56D CAGCAATATGAGG . 46 15 69 0 . . LOXL2 4017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 23198669 23198669 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002318 exon4 c.A579C p.S193S GTAGGTTGAGAGG . 41 16 41 0 . . UPK3A 7380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 45681856 45681856 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006953 exon2 c.T87G p.T29T TGTGACTTTCGCC . 21 5 37 0 . . NPLOC4 55666 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 79563165 79563165 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017921 exon11 c.A1097C p.K366T ACAAACTTGGATC . 40 18 80 0 . . ITGB4 3691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 73738739 73738739 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001005731 exon25 c.G2859C p.E953D GCCTGAGGATGAC . 28 14 49 0 . . ACLY 47 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 40049390 40049390 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001096 exon15 c.C1497T p.A499A CACAATGGCCTTG . 27 15 39 0 . . ZNF583 147949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 56935139 56935139 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001159861 exon5 c.A1112G p.Q371R TACATCAGAGAAT . 33 11 67 0 . . ANKRD20A9P 284232 hgsc.bcm.edu;ucsc.edu 37 13 19426389 19426389 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGGATATCACTGT . 26 10 52 0 . . QPRT 23475 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 29706151 29706151 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014298 exon2 c.C180G p.F60L TTTCTTCGATGCC . 30 13 51 0 . . EEF1A1 1915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 74229629 74229629 + Missense_Mutation SNP T T G rs11550839 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001402 exon2 c.A121C p.K41Q CAAATTTTTCAAT . 96 62 130 0 . . ANKRD17 26057 hgsc.bcm.edu 37 4 73979583 73979583 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ANKRD17,NS,lymphoid_neoplasm,0,1 ANKRD17 NM_032217 exon24 c.C4327A p.Q1443K TGGCTTGTACTAT . 27 2 74 0 . 0 WNT3A 89780 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 228194881 228194881 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_033131 exon1 c.G52C p.G18R GCTCTGGGCAGCT . 54 33 41 0 . . WDFY3 23001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 85687060 85687060 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014991 exon32 c.T5091G p.N1697K AGACTGATTACTT . 22 16 51 0 . . HRH2 3274 hgsc.bcm.edu 37 5 175111128 175111128 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc HRH2_ENST00000377291,middle_lobe,carcinoma,0,3 HRH2_ENST00000377291 NM_001131055 exon2 c.G892T p.G298W CGCACCGGGTACC . 36 2 28 0 . 0 EIF4G1 1981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 184039802 184039802 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001194946 exon11 c.A1451T p.E484V AGAGTGAGAAAGG . 79 26 111 0 . . ABCB11 8647 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 169820752 169820752 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003742 exon18 c.T2142G p.V714V ATCTACAACAGCT . 50 24 58 0 . . ST7L 54879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 113140706 113140706 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_138729 exon5 c.A509G p.Y170C CAAGTGTATCTTT . 38 28 98 0 . . ABCA13 154664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 48315409 48315409 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152701 exon17 c.G6146T p.S2049I AAAAAAGTGAAAC . 55 12 66 0 . . CNTLN 54875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 17273832 17273832 + Silent SNP T T C rs369987628 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017738 exon6 c.T951C p.L317L TGAACTTATCCAG . 36 10 78 0 . . CTIF 9811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 46385774 46385774 + Silent SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001142397 exon13 c.G1647C p.L549L GCTCCTGGCCAGC . 15 6 21 0 . . ZNF500 26048 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 4815793 4815793 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021646 exon2 c.G187C p.G63R GGGGCCCAGCCAC . 22 9 48 0 . . LRRC16B 90668 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 24532678 24532678 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_138360 exon31 c.G2915A p.R972K AACTAAGGCATCA . 19 14 22 0 . . TTLL4 9654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 219603258 219603258 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014640 exon3 c.T859G p.L287V ATCGCCTTGTCTA . 19 10 36 0 . . GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 90079724 90079724 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032119 exon67 c.A13503G p.L4501L CCACCTAGTGAGC . 62 37 91 0 . . TVP23B 51030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 18702239 18702239 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016078 exon5 c.T445A p.F149I TTCTCCTTCAGAG . 72 39 125 0 . . CHAMP1 283489 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 115090640 115090640 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001164144 exon3 c.A1323C p.K441N CAGAAAACCCTCA . 33 16 59 0 . . COL24A1 255631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 86591498 86591498 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152890 exon3 c.G521C p.S174T GAGACACTTTGGT . 12 12 33 0 . . SEMA3D 223117 hgsc.bcm.edu 37 7 84651769 84651769 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc SEMA3D,NS,adenocarcinoma,0,1 SEMA3D NM_152754 exon11 c.A1352G p.Q451R ACTATCTGTGTCA . 49 2 62 0 . 0 PCGF5 84333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 93021177 93021177 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001256549 exon7 c.A569G p.Y190C GTTCTTATGAGGT . 157 63 224 0 . . C17orf70 80233 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 79514062 79514062 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_025161 exon5 c.T2046G p.T682T CCGACAAGTTTCC . 12 4 19 0 . . LIX1L 128077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 145498117 145498117 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153713 exon5 c.T708G p.V236V GACAGTTTTTCAA . 82 12 80 0 . . ZBTB38 253461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 141162287 141162287 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001080412 exon8 c.A1057T p.S353C TTTGACAGCAGCA . 35 17 33 0 . . TPP1 1200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 6637270 6637270 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000391 exon9 c.A1111C p.R371R GGTGTCTTCCAGA . 40 17 63 0 . . CDC14A 8556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 100983832 100983832 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003672 exon16 c.A1781G p.Y594C TTCATTACTAAGG . 33 22 72 0 . . ADH6 130 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 100130084 100130084 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000672 exon6 c.T569C p.V190A GGAGTCACCTAAA . 9 6 28 0 . . ATAD2B 54454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 24118774 24118774 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001242338 exon2 c.C283T p.Q95X CAGGTTGTTTCAA . 38 15 54 0 . . SMC4 10051 hgsc.bcm.edu;bcgsc.ca 37 3 160150976 160150976 + Silent SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005496 exon22 c.C3693A p.S1231S TGTGTCCATTGTT . 87 4 92 0 . . SREBF1 6720 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 17722483 17722483 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001005291 exon6 c.T1002C p.P334P GTTGATAGGCAGC . 18 5 37 0 . . TNFRSF10D 8793 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 23003411 23003411 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003840 exon5 c.T506C p.V169A TTACTGACCTTGA . 42 14 53 0 . . CACNA1I 8911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 40059833 40059833 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021096 exon19 c.A3584C p.E1195A AGATCGAGGCCGG . 15 6 17 0 . . C6orf132 647024 hgsc.bcm.edu 37 6 42074397 42074397 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001164446 exon4 c.C1253A p.P418H GCACAGGGCAAAG . 20 4 9 0 . . ATP13A3 79572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 194169221 194169221 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024524 exon11 c.C1115T p.T372I TCTCCAGTGTAGA . 79 24 56 0 . . TIMM23 100287932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 51592574 51592574 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006327 exon7 c.T560G p.L187R CTGGTAAGTGTTA . 33 15 65 0 . . DNAH6 1768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 84930673 84930673 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001370 exon50 c.A8216C p.E2739A ATCAAGAAAGTGC . 17 7 35 0 . . CHEK2 11200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 29130501 29130501 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_145862 exon2 c.A209G p.E70G TAGAGTTCCTGAG . 17 12 52 0 . . KCNH8 131096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 19432012 19432012 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_144633 exon6 c.C851A p.S284Y GCAAGTCTGGCCA . 24 18 49 0 . . IL6ST 3572 hgsc.bcm.edu 37 5 55250698 55250698 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002184 exon11 c.G1390A p.A464T AGGGTGCTTTATC . 80 4 77 0 . . ZNF354C 30832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 178506225 178506225 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014594 exon5 c.A792C p.R264S TCAGAGAATTCAT . 55 12 71 0 . . CYP2F1 1572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 41633960 41633960 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000774 exon10 c.T1449A p.P483P GCGGCCTTTCCAG . 49 23 81 0 . . PLA2G4D 283748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 42363325 42363325 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_178034 exon17 c.G1872T p.W624C ACCTGCCCAGGTG . 39 19 56 0 . . ANKMY1 51281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 241451322 241451322 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016552 exon10 c.A1975G p.R659G CCGTCCTGCCCCC . 27 13 50 0 . . PHF3 23469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 64416712 64416712 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015153 exon12 c.A3657C p.A1219A TGTGGCAAAATTT . 72 19 94 0 . . TAS2R9 50835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 10962389 10962389 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_023917 exon1 c.A286C p.S96R AGAGACTTGAATT . 54 19 66 0 . . HNRNPU 3192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 245019773 245019773 + Missense_Mutation SNP A A T rs111577008 bycluster TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_031844 exon10 c.T1898A p.V633D TTGAGGACCGCAT . 107 49 56 0 . . PAOX 196743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 135193724 135193724 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_207128 exon2 c.T403C p.Y135H CTGTTCTACGGCC . 43 21 77 0 . . ITPR2 3709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 26816634 26816634 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002223 exon15 c.A1697T p.D566V CGGTAATCCTGCT . 46 20 100 0 . . NLRP8 126205 hgsc.bcm.edu;bcgsc.ca 37 19 56467321 56467321 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_176811 exon3 c.G1897T p.V633F AAAGTTGTCTTGA . 54 4 94 0 . . RTP4 64108 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 187088734 187088734 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_022147 exon2 c.A314T p.E105V TGCCTGAGTTCTC . 25 4 47 0 . . PSG5 5673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 43690496 43690496 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002781 exon1 c.C62T p.T21I TCACCTGTGAGCA . 70 26 97 0 . . UNC93A 54346 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 167717430 167717430 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018974 exon5 c.A649G p.M217V GTCCTGATGATAG . 88 28 69 0 . . COL28A1 340267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 7476074 7476074 + Silent SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc COL28A1,NS,carcinoma,0,1 COL28A1 NM_001037763 exon23 c.G1812C p.G604G AGGTATCCCAGGT . 69 29 90 0 . 0 PCF11 51585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 82877755 82877755 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015885 exon5 c.A1816C p.S606R AATAAAAGGTATG . 130 62 166 0 . . EZR 7430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 159208198 159208198 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003379 exon3 c.T134G p.F45C AGGCCAAAGTACC . 33 20 43 0 . . MLL 4297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 118365076 118365076 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001197104 exon17 c.A5252T p.K1751I AAATTAAAAAAGC . 30 18 61 0 . . MPDZ 8777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 13190124 13190124 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003829 exon16 c.T2143G p.L715V AATCTAAAATGCT . 36 16 51 0 . . ABCA17P 650655 hgsc.bcm.edu 37 16 2416852 2416852 + RNA SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTGTGGGCATCCT . 17 9 26 0 . . BAP1 8314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52441997 52441997 + Missense_Mutation SNP A A C rs113802540 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004656 exon5 c.T352G p.F118V TGGTGAAGTCCTT . 14 12 44 0 . . NID1 4811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 236175345 236175345 + Splice_Site SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002508 exon13 c.2405-2A>G . TACATCTGTAAAA . 31 16 21 0 . . RAB11B 9230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 8467132 8467132 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004218 exon3 c.T399C p.A133A GCGGGCTGTGCCC . 17 5 26 0 . . C15orf52 388115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 40628778 40628778 + Missense_Mutation SNP C C T rs370895955 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc C15orf52,right_lower_lobe,carcinoma,0,1 C15orf52 NM_207380 exon9 c.G1016A p.R339Q TACCTTCGGGCCC . 42 18 56 0 . 0 BCLAF1 9774 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 136597516 136597516 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014739 exon5 c.T1147C p.Y383H TGAAGTAATCTAG . 149 31 210 0 . . SMARCC2 6601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 56578658 56578658 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_139067 exon5 c.G462A p.G154G TAATTTCCCTAGT . 63 22 92 0 . . OGFOD1 55239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 56487225 56487225 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018233 exon2 c.T205A p.F69I CCAAACTTCATCC . 81 36 118 0 . . SLC25A16 8034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 70243272 70243272 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152707 exon9 c.C916T p.L306F AATTAAGAGATAA . 52 20 69 0 . . STAG1 10274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 136059372 136059372 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005862 exon32 c.T3633C p.D1211D ATTCATATCTTCT . 53 14 64 0 . . MPRIP 23164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 17050634 17050634 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015134 exon11 c.G1208T p.W403L TTTAGTGGAAGAA . 45 21 69 0 . . NDUFV1 4723 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 67378874 67378874 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007103 exon7 c.G914C p.G305A CCCCAGGGGGTGT . 32 15 52 0 . . CNN3 1266 hgsc.bcm.edu 37 1 95368727 95368727 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001839 exon3 c.A197G p.Q66R CCTGGCTGTAGCT . 22 10 121 0 . . ATP13A3 79572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 194152559 194152559 + Nonsense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024524 exon21 c.A2308T p.K770X TCACTTTATCCTG . 55 30 56 0 . . GJA10 84694 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 90604202 90604202 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032602 exon1 c.C15G p.N5K CTGGAACTTATTG . 61 18 77 0 . . TEPP 374739 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 58019375 58019375 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_199046 exon6 c.G758A p.C253Y CCTGCTGCCCGCC . 46 16 76 0 . . STAT1 6772 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 191859926 191859926 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007315 exon10 c.A805G p.S269G GCAGACTCTCCGC . 35 11 67 0 . . TTC12 54970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 113230696 113230696 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017868 exon18 c.C1580A p.S527Y GCCTGTCTTTACT . 29 18 24 0 . . ATF5 22809 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 50436094 50436094 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012068 exon4 c.C594T p.A198A CCTGGCCCCCTAC . 35 24 60 0 . . DOC2GP 390213 hgsc.bcm.edu 37 11 67383064 67383064 + RNA SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCAGTGGGGGCCT . 25 10 46 0 . . ACO1 48 hgsc.bcm.edu 37 9 32429463 32429463 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002197 exon13 c.G1531T p.G511W AACAGTGGGCCTT . 27 4 40 0 . . UBN2 254048 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 138968747 138968747 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_173569 exon15 c.G3096A p.S1032S CTTCTCGATGGCT . 15 6 21 0 . . PPAP2A 8611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 54763893 54763893 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_176895 exon3 c.T298C p.Y100H CTTTGTAAATAGT . 48 28 55 0 . . ASH1L 55870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 155447890 155447890 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018489 exon3 c.T4771G p.F1591V GAGTGAATCCTCC . 71 12 77 0 . . GOLGA8I 283796 hgsc.bcm.edu 37 15 23258877 23258877 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TCCTTTTCTATCC . 13 4 13 0 . . NXPH4 11247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 57619423 57619423 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007224 exon2 c.T820G p.F274V AAGCCCTTCAAAG . 12 7 27 0 . . CDR2L 30850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 72997553 72997553 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014603 exon3 c.G310C p.E104Q GTGCTGGAGAGTA . 22 11 57 0 . . STARD5 80765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 81614763 81614763 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_181900 exon3 c.C268G p.Q90E TGCTTTGGATAAT . 29 17 63 0 . . HSPA8 3312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 122931947 122931947 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006597 exon2 c.T86G p.I29S TTGGCAATTATCT . 21 13 33 0 . . MSRB2 22921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 23393156 23393156 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc MSRB2,colon,carcinoma,0,1 MSRB2 NM_012228 exon2 c.G202C p.E68Q ACAAGAGAAAAGG . 39 15 62 0 . 0 MCCC1 56922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 182756844 182756844 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020166 exon12 c.A1347T p.T449T CAGTTTTGTCAAT . 58 15 47 0 . . ACVR2A 92 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 148676088 148676088 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001616 exon7 c.G889A p.A297T ACCATGGCTAGAG . 35 25 87 0 . . TMEM38A 79041 hgsc.bcm.edu 37 19 16790827 16790827 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc TMEM38A,colon,carcinoma,-1,1 TMEM38A NM_024074 exon2 c.G157T p.A53S CCCATCGCGTCCT . 21 2 20 0 . -1 DDX19A 55308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 70404165 70404165 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018332 exon10 c.A1060C p.K354Q CTCTCAAAAGAAG . 30 17 81 0 . . NOM1 64434 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 156745289 156745289 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc NOM1,bladder,carcinoma,0,1 NOM1 NM_138400 exon2 c.A1109G p.N370S TACTTAACAGGTG . 71 31 114 0 . 0 KIAA0125 9834 hgsc.bcm.edu;bcgsc.ca 37 14 106391361 106391361 + RNA SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CTCTCCTGGGCAA . 44 13 72 0 . . CCDC168 643677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 103383698 103383698 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001146197 exon4 c.C19349A p.T6450N GAAATAGTCCCTT . 46 14 89 0 . . LRP6 4040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 12291295 12291295 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002336 exon16 c.A3571G p.I1191V CATGAATGTCACT . 34 18 60 0 . . BTBD8 284697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 92573559 92573559 + Splice_Site SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_183242 exon4 c.662+1G>T . TCACAGGTAAATA . 28 20 88 0 . . RAB6A 5870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 73427372 73427372 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002869 exon5 c.G325C p.D109H CATCATCAATCCA . 52 26 81 0 . . CCDC74A 90557 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 132285743 132285743 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001258304 exon1 c.T200C p.M67T CGGAGATGCTGGC . 70 17 95 0 . . NEFM 4741 hgsc.bcm.edu 37 8 24775376 24775376 + Missense_Mutation SNP T T C rs201305028 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc NEFM,lower_third,carcinoma,-2,1 NEFM NM_005382 exon3 c.T2008C p.S670P CCTGTGTCAAAAT . 97 4 127 0 . -2 BCL3 602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 45254588 45254588 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005178 exon2 c.C361T p.L121F CACCCCCTTTCTG . 23 17 32 0 . . OR6V1 346517 hgsc.bcm.edu;broad.mit.edu 37 7 142749878 142749878 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001001667 exon1 c.G441A p.W147X TGCCTGGGCAGCT . 34 15 44 0 . . SYNJ2BP-COX16 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 70839843 70839843 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001202547 exon4 c.G303A p.Q101Q CTGCACCTGTAAC . 23 10 42 0 . . WBP2 23558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 73847681 73847681 + Nonsense_Mutation SNP T T A rs149300980 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012478 exon2 c.A136T p.K46X CTTTCTTGGTCCC . 40 16 58 0 . . MRPL2 51069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 43022170 43022170 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015950 exon7 c.A760G p.K254E CCCGTTTGTTATG . 27 5 42 0 . . CYP20A1 57404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 204111487 204111487 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_177538 exon3 c.T132G p.N44K TGGTAATCTTCCA . 29 13 79 0 . . ZNF204P 7754 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 6 27326564 27326564 + RNA SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AGGGCTGAACAGA . 55 12 62 0 . . RPTN 126638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 152129068 152129068 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001122965 exon3 c.C507A p.H169Q ACTGTGGTGGGAA . 68 9 91 0 . . FLJ33360 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 6337401 6337401 + RNA SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GGTGCTCCAAGAA . 26 17 13 0 . . ARMC6 93436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 19162649 19162649 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001199196 exon5 c.T498C p.T166T GCTGACTGATGGA . 18 9 21 0 . . RAPGEF3 10411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 48131422 48131422 + Silent SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001098531 exon28 c.T2700A p.A900A GACATAAGCCCAG . 43 16 50 0 . . MARCH6 10299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 10402698 10402698 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005885 exon14 c.G1176A p.W392X TGGTTGGTGGCTG . 121 18 93 0 . . C10orf62 414157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 99350107 99350107 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001009997 exon1 c.T453C p.A151A CATAGCTTACCAG . 35 15 50 0 . . TGFBR2 7048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 30686364 30686364 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001024847 exon3 c.A295G p.T99A AGCATCACCTCCA . 12 11 65 0 . . SHBG 6462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7533491 7533491 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001040 exon1 c.A1C p.M1L CTGATTATGGAGA . 18 7 27 0 . . FMN1 342184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 33256352 33256352 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001103184 exon5 c.A2425C p.K809Q GAGGTTTTTTCTT . 68 28 105 0 . . ALOX12B 242 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7976095 7976095 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001139 exon15 c.T2100C p.S700S CTAAATAGAAATG . 41 20 37 0 . . ISX 91464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 35481519 35481519 + Nonsense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001008494 exon4 c.C571T p.Q191X CAAGATCAGCTGG . 29 15 30 0 . . MSH5-SAPCD1 100532732 hgsc.bcm.edu 37 6 31711843 31711843 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CGGCACAAGTGCT . 30 17 46 0 . . UBR5 51366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 103299709 103299709 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015902 exon37 c.A4909G p.S1637G GCCCACTAGCATT . 27 10 26 0 . . UTP20 27340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 101705835 101705835 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014503 exon21 c.T2333C p.M778T ATGATATGACAGA . 37 22 54 0 . . ZBTB21 49854 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 43412457 43412457 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001098402 exon3 c.G1748C p.R583T TGAAACCTCTTGT . 10 9 47 0 . . ATXN7L3B 552889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 74932028 74932028 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001136262 exon1 c.T136G p.F46V GGCTACTTCTACC . 39 14 68 0 . . LMBR1 64327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 156589175 156589175 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_022458 exon5 c.C331T p.L111F AAGCAAGATTCCA . 66 27 108 0 . . SENP5 205564 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 196626893 196626893 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152699 exon4 c.A1718C p.D573A TGGACGACCTGGC . 42 12 54 0 . . FUS 2521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 31201095 31201095 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004960 exon10 c.C1046G p.A349G CTAAAGCAGCTAT . 39 17 62 0 . . GPR97 222487 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 57719585 57719585 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_170776 exon11 c.C1287T p.Y429Y CATGTACGCCCTC . 33 18 70 0 . . LAMB3 3914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 209801446 209801446 + Missense_Mutation SNP C C G rs145170416 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000228 exon11 c.G1222C p.E408Q AGCGCTCTCCCTG . 58 44 58 0 0.000 . JMJD1C 221037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 64966945 64966945 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032776 exon10 c.A4484C p.K1495T CTACTTTTATACT . 38 7 79 0 . . ELN 2006 hgsc.bcm.edu 37 7 73474788 73474788 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001081754 exon25 c.T1719C p.V573V TGGTGTTCCTGGA . 16 4 31 0 . . COL20A1 57642 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 61926534 61926534 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020882 exon2 c.A75C p.Q25H AGAGCAAGTTCAA . 68 23 96 0 . . CCT4 10575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 62100224 62100224 + Silent SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006430 exon10 c.T1038A p.A346A AATATGAGCAACT . 56 24 111 0 . . BTNL9 153579 hgsc.bcm.edu;broad.mit.edu 37 5 180480244 180480244 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152547 exon5 c.G781C p.A261P TTCGTCGCGACCC . 8 4 8 0 . . MYCBP2 23077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 77672823 77672823 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015057 exon56 c.T8466G p.P2822P TGGCTTAGGAGAT . 26 12 43 0 . . MEF2D 4209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156450644 156450644 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005920 exon4 c.G378A p.G126G GAAGAGCCCGTCG . 55 35 44 0 . . STAP2 55620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 4327373 4327373 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001013841 exon7 c.G600A p.V200V CCGGACCACGTGC . 16 10 36 0 . . MRPL44 65080 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 224828637 224828637 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc MRPL44,colon,carcinoma,0,1 MRPL44 NM_022915 exon3 c.T813G p.F271L GTATTTTGTTGGC . 66 29 117 0 . 0 NDUFB10 4716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2011155 2011155 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004548 exon2 c.A132C p.E44D TGCAGAATTTATA . 60 20 69 0 . . DAPK1 1612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 90255340 90255340 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004938 exon8 c.A757G p.R253G TTCATAAGAAGAC . 38 17 60 0 . . BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 32667184 32667184 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016252 exon18 c.T3996C p.V1332V GCTTGTTAATACT . 47 20 81 0 . . ZNF204P 7754 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 6 27327423 27327423 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCACACTCACTGC . 53 14 65 0 . . DENND1A 57706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 126414328 126414328 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024820 exon9 c.A582T p.E194D CCGGCGTTCGTAC . 21 7 38 0 . . ANKRD13C 81573 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 70779446 70779446 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_030816 exon5 c.T691A p.W231R AATCCCAGTGAAG . 55 24 99 0 . . ADAMTS5 11096 hgsc.bcm.edu 37 21 28296852 28296852 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ADAMTS5,NS,carcinoma,0,1 ADAMTS5 NM_007038 exon8 c.C2313A p.F771L GGCAGTGAATCTA . 21 2 97 0 . 0 RB1CC1 9821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 53568653 53568653 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001083617 exon15 c.C3736T p.L1246L CTTTTAGGGCAGT . 55 26 55 0 . . TMCO1 54499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 165728808 165728808 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_019026 exon3 c.G315A p.K105K TGTTTCCTTCTTC . 93 60 79 0 . . SOAT1 6646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 179312001 179312001 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003101 exon9 c.T864C p.T288T AGGCACTGTTCCA . 73 54 66 0 . . NACAD 23148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 45124486 45124486 + Silent SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001146334 exon2 c.C1293A p.A431A CCCCTTGGCCCCA . 13 5 26 0 . . C2CD2L 9854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 118983266 118983266 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014807 exon9 c.C1159T p.L387F TGCCCACTCACCC . 13 7 33 0 . . CEP350 9857 hgsc.bcm.edu 37 1 180023000 180023000 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014810 exon24 c.T5105C p.L1702P CACTCCTGCGTCT . 98 4 79 0 . . ATAD3C 219293 hgsc.bcm.edu 37 1 1398007 1398007 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ATAD3C,colon,carcinoma,0,1 ATAD3C NM_001039211 exon11 c.C1008T p.Y336Y TGACTACGGGAGG . 48 2 88 0 . 0 POTEF 728378 hgsc.bcm.edu 37 2 130832686 130832686 + Missense_Mutation SNP G G A rs376041561 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc POTEF,NS,carcinoma,0,1 POTEF NM_001099771 exon17 c.C2359T p.H787Y TGTGGTGCCAGAT . 52 3 77 0 . 0 ZCCHC8 55596 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 122973962 122973962 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017612 exon5 c.G472A p.A158T TAATGGCACAGGA . 70 29 130 0 . . CDC20B 166979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 54442593 54442593 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001170402 exon3 c.T218G p.I73S GTGGTAATGGGGC . 65 23 89 0 . . HMGCS2 3158 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 120302536 120302536 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005518 exon3 c.A636T p.G212G CACAGCTCCGGCC . 14 6 25 0 . . IL12B 3593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 158749517 158749517 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002187 exon4 c.C367G p.P123A TTTTGGGTTCTGG . 65 29 60 0 . . TMEM128 85013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 4242110 4242110 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032927 exon3 c.T264C p.Y88Y GACATCATATTCT . 79 37 85 0 . . SNHG7 84973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139620610 139620610 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGAGTGTAGAAAT . 25 13 46 0 . . ATF4 468 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 39917554 39917554 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001675 exon1 c.A104C p.D35A TCTTAGATGATTA . 35 10 65 0 . . PIK3CB 5291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 138407783 138407783 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006219 exon14 c.A2070C p.Q690H ACCAAATTGTACT . 41 15 45 0 . . USP2 9099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 119243852 119243852 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004205 exon2 c.C339T p.F113F ATAAGGGAATCCG . 18 8 36 0 . . ODF2 4957 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 131256904 131256904 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153435 exon17 c.A2060C p.K687T AGCGGAAGAACAT . 14 6 17 0 . . COL22A1 169044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 139815133 139815133 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152888 exon11 c.G1539A p.K513K CTCTCCCTTAGGT . 28 13 38 0 . . ACSL5 51703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 114168254 114168254 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016234 exon6 c.A675C p.E225D ACCAGAAGCCATC . 57 23 93 0 . . SMAD5-AS1 9597 hgsc.bcm.edu;ucsc.edu 37 5 135469456 135469456 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTTTGGAGCCTAA . 44 19 58 0 . . GALNT4 8693 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 89917207 89917207 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003774 exon1 c.A1120G p.N374D GGAAATTGGGGCG . 49 14 78 0 . . TBR1 10716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 162273323 162273323 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006593 exon1 c.C402T p.H134H GGCGCACCCCGCC . 27 15 39 0 . . ABCC2 1244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 101544402 101544402 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000392 exon2 c.C71A p.P24Q ACCTGCCACTTTG . 28 13 40 0 . . SREK1IP1 285672 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 64020374 64020374 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_173829 exon5 c.A305T p.E102V GTGTCCTCTTCAG . 102 6 122 0 . . SIPA1L3 23094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 38689097 38689097 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015073 exon19 c.G4909T p.G1637W GACCCTGGGCTGA . 21 12 22 0 . . PRICKLE4 29964 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 41751913 41751913 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_013397 exon4 c.C177G p.N59K CACCAACCAAGCC . 53 27 86 0 . . TAF2 6873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 120754808 120754808 + Silent SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003184 exon25 c.C3303G p.P1101P CCACTGGGGTTTT . 93 18 151 0 . . SF3A3 10946 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 38444662 38444662 + Silent SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006802 exon10 c.C825G p.G275G TTACCCGCCACAT . 63 28 104 0 . . PRPF39 55015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 45583442 45583442 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017922 exon12 c.A1814C p.K605T CTTTAAAAAGGAA . 94 33 147 0 . . CSNK1G2-AS1 255193 hgsc.bcm.edu 37 19 1953519 1953519 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTGGGAAAATTGC . 27 14 49 0 . . FUZ 80199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 50314691 50314691 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_025129 exon5 c.G421T p.D141Y CCGAGTCCCCCAG . 26 13 52 0 . . ATAD5 79915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 29220580 29220580 + Nonsense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024857 exon21 c.T4709A p.L1570X AAACATTGGTAAT . 26 11 47 0 . . ZFAND6 54469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 80429825 80429825 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001242913 exon8 c.T482G p.F161C CAGGGTTTGAATG . 43 18 57 0 . . CSPG4 1464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 75968341 75968341 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001897 exon10 c.G6519A p.V2173V CAGGGCCACGCTG . 36 18 50 0 . . MICAL3 57553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 18379580 18379580 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015241 exon8 c.T1116G p.T372T CATACAAGTGAAG . 11 5 26 0 . . LRRTM3 347731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 68686686 68686686 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_178011 exon2 c.T12C p.N4N TTTCAATGTAATT . 36 19 51 0 . . ELL2 22936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 95236433 95236433 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012081 exon7 c.T918C p.P306P ACATACAGGAGAT . 66 20 57 0 . . INPPL1 3636 hgsc.bcm.edu;broad.mit.edu 37 11 71939417 71939417 + Missense_Mutation SNP G G A rs142516692 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc INPPL1,NS,carcinoma,0,1 INPPL1 NM_001567 exon3 c.G272A p.R91H TGCGCCGCTTCCA . 29 3 35 0 0.000 0 UNC5D 137970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 35544140 35544140 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_080872 exon7 c.A997T p.T333S GAGTGCACAGCAC . 26 13 60 0 . . KCNAB2 8514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 6101927 6101927 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001199860 exon3 c.T114G p.F38L CCAGTTTTACAGG . 35 24 158 0 . . STX3 6809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 59554567 59554567 + Nonsense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004177 exon3 c.A172T p.K58X GCTAAGAAACTCT . 29 6 64 0 . . PCF11 51585 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 11 82877699 82877699 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc PCF11_ENST00000298281,colon,carcinoma,0,2 PCF11_ENST00000298281 NM_015885 exon5 c.A1760C p.N587T TAGAAAACTGGCA . 77 31 126 0 . 0 MYRIP 25924 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 40231505 40231505 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015460 exon10 c.G1216A p.A406T AGTGAGGCCTTGA . 9 7 32 0 . . NVL 4931 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 224477340 224477340 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002533 exon13 c.T1421C p.L474P GCCATGAGATCAG . 67 17 66 0 . . MYOM1 8736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 3094261 3094261 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003803 exon26 c.A3771C p.K1257N CTGGCCTTTCTCC . 132 56 233 0 . . TTR 7276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 29172884 29172884 + Missense_Mutation SNP T T G rs121918094 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000371 exon2 c.T95G p.L32R GTCCTCTGATGGT . 39 14 43 0 . . NOXO1 124056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2030477 2030477 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_172168 exon4 c.T307C p.Y103H GAGAATAGGTTTC . 25 16 54 0 . . ZNF69 7620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 12014751 12014751 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021915 exon3 c.T180C p.Y60Y TGAATATGAGTAC . 105 38 196 0 . . CRAT 1384 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 131864315 131864315 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000755 exon6 c.C652A p.H218N CACTGTGGTACAC . 16 7 43 0 . . PCDHGA3 56112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140724331 140724331 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032011 exon1 c.A731T p.Q244L TTACTCAGCCTGA . 51 11 60 0 . . TNK2 10188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 195609127 195609127 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001010938 exon6 c.A871T p.T291S TCAGAGTCCCCAG . 48 16 70 0 . . RIT1 6016 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 155880452 155880452 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc RIT1,NS,malignant_melanoma,0,1 RIT1 NM_001256821 exon2 c.A152T p.K51M CCACTCTTCCCTA . 58 36 58 0 . 0 PCF11 51585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 82877714 82877714 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015885 exon5 c.A1775C p.K592T GTTCCAAGTCTGC . 107 48 137 0 . . PIK3R1 5295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 67522582 67522582 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_181523 exon2 c.G79T p.G27C CACTTGGGTGACA . 112 67 148 0 . . ATP5S 27109 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 50789296 50789296 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015684 exon3 c.G220T p.G74W CGCTGTGGGGCCA . 15 5 45 0 . . HOXA6 3203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 27187127 27187127 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024014 exon1 c.C242G p.S81C TTATCAGAATAGA . 32 13 52 0 . . SCFD1 23256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 31097418 31097418 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016106 exon2 c.C65G p.A22G CAGTGGCTTTGAA . 56 21 101 0 . . ODF2 4957 hgsc.bcm.edu;broad.mit.edu 37 9 131256884 131256884 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ODF2_ENST00000372814,NS,carcinoma,0,2 ODF2_ENST00000372814 NM_153435 exon17 c.A2040C p.Q680H AGACCAACTGCAG . 13 4 16 0 . 0 DNAJC16 23341 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 15855658 15855658 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015291 exon2 c.C58T p.L20L CTGATCCTGCAAA . 81 34 106 0 . . DPY19L2P2 349152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 102920615 102920615 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGGAGCTGGGTCA . 22 9 50 0 . . TRAPPC9 83696 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 141415702 141415702 + Nonsense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_031466 exon6 c.A1276T p.K426X CCTCTTTATACTT . 38 16 67 0 . . RPRD1B 58490 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 20 36694651 36694651 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021215 exon6 c.A824C p.K275T AGAAAAAACTAGA . 30 10 48 0 . . NDN 4692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 23931983 23931983 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002487 exon1 c.G382A p.V128I CGATGACATCTTT . 26 13 39 0 . . ANKRD42 338699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 82935942 82935942 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_182603 exon6 c.T548G p.L183R AATTCCTAGTCAG . 81 34 112 0 . . CHD1 1105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 98240741 98240741 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001270 exon2 c.A115G p.S39G CACTACTGCTTCC . 23 10 40 0 . . CTR9 9646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 10785962 10785962 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014633 exon11 c.T1392G p.L464L TAGACTTGGAAAC . 42 17 62 0 . . RPTN 126638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 152129066 152129066 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc .,15 . NM_001122965 exon3 c.A509G p.H170R TGACTGTGGTGGG . 70 10 94 0 . 123 SLC16A10 117247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 111498823 111498823 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018593 exon3 c.A897C p.G299G AGTTGGAATACCA . 13 6 11 0 . . CNBD2 140894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 34568459 34568459 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_080834 exon4 c.T322A p.C108S GCCGTCTGTAACA . 45 22 50 0 . . FAM208B 54906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 5803315 5803315 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017782 exon19 c.T7055C p.I2352T ATATCATTGAATT . 38 18 76 0 . . VWA8 23078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 42357983 42357983 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015058 exon19 c.A2225C p.N742T TGTGCATTATAGA . 54 14 83 0 . . SETD1B 23067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 122243775 122243775 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015048 exon3 c.A308G p.K103R CTCCGAAGCAGGT . 28 12 53 0 . . PLEKHH3 79990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 40823409 40823409 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024927 exon8 c.C1244T p.A415V GCACAGGCACCAG . 57 22 113 0 . . BARHL2 343472 hgsc.bcm.edu 37 1 91182194 91182194 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc BARHL2,colon,carcinoma,0,1 BARHL2 NM_020063 exon1 c.G559C p.E187Q CCTGCTCGAGCTT . 12 2 44 0 . 0 CNTROB 116840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7840511 7840511 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001037144 exon7 c.T858G p.S286S CCTTTCTGAGGCC . 60 31 74 0 . . ZCCHC4 29063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 25363483 25363483 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024936 exon9 c.A1014C p.V338V CTAGGTAGATTAT . 77 33 95 0 . . EIF4G1 1981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 184040641 184040641 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001194946 exon14 c.A1849C p.K617Q GAGAAAAAACGTT . 54 15 67 0 . . PHC3 80012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 169820688 169820688 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024947 exon13 c.A2503T p.S835C AACGACTAAGTGC . 63 27 70 0 . . SNORD116-11 100033423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 25321133 25321133 + RNA SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AGTGAAAACTTTA . 52 27 97 0 . . ZBTB16 7704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 114121244 114121244 + Silent SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006006 exon7 c.A1989T p.I663I GAGGATAGAGAAG . 17 10 32 0 . . TAS1R2 80834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 19166611 19166611 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc TAS1R2,caecum,carcinoma,0,1 TAS1R2 NM_152232 exon6 c.G2002A p.A668T TGTAGGCGCGTGG . 42 19 35 0 . 0 C9orf152 401546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 112963453 112963453 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001012993 exon2 c.G495T p.M165I CTGAGTCATCTGA . 30 13 53 0 . . FLJ26850 0 hgsc.bcm.edu 37 19 50563715 50563715 + RNA SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GATAGTGACATGC . 27 9 36 0 . . RABGAP1 23637 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 125760961 125760961 + Silent SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012197 exon10 c.C1290G p.V430V AAAAGTCCGCGTT . 110 39 200 0 . . WBP4 11193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 41636805 41636805 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007187 exon2 c.A28C p.K10Q CAGCCAAAGAAAT . 59 25 113 0 . . SUPT6H 6830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 27005649 27005649 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003170 exon10 c.A1203C p.E401D GGATGAAAAGGTA . 41 15 82 0 . . NSUN5P1 155400 hgsc.bcm.edu 37 7 75045150 75045150 + RNA SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GGGCTTGGGACCC . 45 16 48 0 . . MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 1263842 1263842 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002458 exon31 c.C5732G p.T1911S AGCCGACCACAAC . 53 24 78 0 . . SMG1 23049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 18865012 18865012 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015092 exon31 c.A4661C p.N1554T GTGAAGTTCTGTT . 52 15 94 0 . . CCDC168 643677 hgsc.bcm.edu 37 13 103400137 103400137 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001146197 exon4 c.G2910A p.E970E ACTATTCTCCAAA . 77 4 119 0 . . LIMD1 8994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 45637209 45637209 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014240 exon1 c.T838G p.L280V CCAAACTTGGAGA . 22 16 77 0 . . APMAP 57136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 24954309 24954309 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020531 exon4 c.C393T p.T131T GGCAATGGTCTCT . 61 21 69 0 . . FBXO5 26271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 153296461 153296461 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc FBXO5,mouth,carcinoma,0,1 FBXO5 NM_012177 exon2 c.A399G p.I133M TGCTTCTATTTCA . 40 11 60 0 . 0 NID1 4811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 236175334 236175334 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002508 exon12 c.A2414T p.E805V TGGCATTCATCTA . 34 18 21 0 . . RAB27B 5874 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 52556641 52556641 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004163 exon6 c.C654A p.C218X TATCTGCTAGACT . 36 11 68 0 . . PCF11 51585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 82877696 82877696 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc PCF11_ENST00000298281,bladder,carcinoma,+1,1 PCF11_ENST00000298281 NM_015885 exon5 c.A1757G p.E586G ATGTAGAAAACTG . 77 30 124 0 . +1 XKR4 114786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 56015559 56015559 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_052898 exon1 c.T511G p.F171V CACGATTTCAGCA . 23 9 22 0 . . RNU6-71 100873774 hgsc.bcm.edu 37 6 56406143 56406143 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AGAACTAACATCC . 63 16 70 0 . . UBR2 23304 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 42644579 42644579 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015255 exon40 c.T4446G p.A1482A TCTTGCTTTGTAT . 50 31 71 0 . . FST 10468 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 52779381 52779381 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_013409 exon3 c.A325G p.N109D CGAATGAACAAGA . 79 22 84 0 . . ZNF598 90850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2052709 2052709 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_178167 exon6 c.T490C p.Y164H GCGAGTACCACTT . 18 12 10 0 . . RNF138P1 379013 hgsc.bcm.edu;ucsc.edu 37 5 54826126 54826126 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CTAGGATCTCCCC . 55 9 72 0 . . CARD11 84433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 2977638 2977638 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032415 exon8 c.T1046C p.L349P CACTTGAGCTCCA . 14 4 33 0 . . MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 1280229 1280229 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002458 exon44 c.G16651T p.D5551Y TCTGGGGACACCC . 57 20 82 0 . . STK32C 282974 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 134039116 134039116 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_173575 exon6 c.T687G p.H229Q GTGTGCATGTCCT . 17 7 32 0 . . ACSM5 54988 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 20451133 20451133 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ACSM5,NS,carcinoma,0,1 ACSM5 NM_017888 exon13 c.A1548C p.A516A AAAGGCATTTATA . 72 22 98 0 . 0 C18orf63 644041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 72020689 72020689 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001174123 exon12 c.A1187T p.K396M GTAGAAAGAAATC . 36 20 58 0 . . PRDM4 11108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 108145645 108145645 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012406 exon5 c.A673G p.I225V TTGGGATTTGGGA . 23 6 44 0 . . FBXO6 26270 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 11733376 11733376 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018438 exon5 c.A552C p.K184N ACTCAAAGTGCAG . 17 11 43 0 . . C2orf71 388939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 29295281 29295281 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001029883 exon1 c.A1847T p.Q616L TCCCTCTGGACCC . 14 7 18 0 . . ASCC3 10973 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 101100758 101100758 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006828 exon18 c.C2831G p.P944R AATGTTGGGTCAA . 89 5 128 0 . . ZFAND2B 130617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 220072980 220072980 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_138802 exon5 c.T437G p.L146R ACAGACTTGCTGC . 19 10 43 0 . . ESPN 83715 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 6511978 6511978 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_031475 exon10 c.T2147G p.L716R CGCTGCTCAATGG . 23 18 78 0 . . PTPN3 5774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 112168774 112168774 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002829 exon18 c.C1760T p.S587L TCCCGTGAGTGGG . 31 13 51 0 . . SYNE2 23224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 64565493 64565493 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_182914 exon63 c.T12335A p.L4112Q CTTACCTGGCAGC . 44 19 42 0 . . PLXNB2 23654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 50720113 50720113 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012401 exon21 c.A3404T p.E1135V CAGCGCTCGGCAC . 24 12 34 0 . . ERC2 26059 hgsc.bcm.edu 37 3 56026205 56026205 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ERC2_ENST00000288221,caecum,carcinoma,0,2 ERC2_ENST00000288221 NM_015576 exon11 c.C2135A p.A712E TAAGACGCCTCTT . 20 2 60 0 . 0 OCRL 4952 hgsc.bcm.edu;broad.mit.edu 37 X 128724136 128724136 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000276 exon24 c.T2595G p.T865T CTTCACTAGTCTT . 9 8 13 0 . . MTUS1 57509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 17510965 17510965 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001001924 exon11 c.A3257G p.D1086G AGTAAATCTTCAA . 59 25 96 0 . . CAPRIN1 4076 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 34074072 34074072 + Silent SNP C C T rs370335951 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_203364 exon2 c.C105T p.A35A GGCCGCCGCGCCG . 32 15 42 0 . . CDK12 51755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 37687154 37687154 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016507 exon14 c.C4058T p.T1353I TTGACACTGATGA . 29 12 60 0 . . AOX2P 344454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 201642727 201642727 + RNA SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCTGTACTCTCGG . 35 15 50 0 . . MYO18A 399687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 27493528 27493528 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_078471 exon2 c.G431A p.R144H CGGCTACGCTGGG . 35 16 37 0 . . INTS7 25896 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 212118230 212118230 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015434 exon19 c.G2497A p.G833R CCACTCCCTCTAC . 46 28 64 0 . . TAF1D 79101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 93469419 93469419 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024116 exon6 c.T745G p.L249V CTTCTAAGTATAC . 64 25 105 0 . . UIMC1 51720 hgsc.bcm.edu 37 5 176396234 176396234 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc UIMC1,NS,carcinoma,0,1 UIMC1 NM_016290 exon6 c.C522T p.N174N AGCCTCGTTTCCC . 71 3 81 0 . 0 GLG1 2734 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 74525044 74525044 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001145667 exon8 c.C1304A p.S435Y CTCAGAGAAAAGT . 28 10 46 0 . . PCSK4 54760 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 1490288 1490288 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017573 exon1 c.C58T p.R20C GGGGGCGGACAAG . 66 28 89 0 . . CHAF1A 10036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 4442934 4442934 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005483 exon15 c.C2783T p.P928L AAGCCCCGTGTGG . 43 12 94 0 . . RIMBP3 85376 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 20458094 20458094 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015672 exon1 c.G3208C p.G1070R TAGTTCCCCAATA . 177 31 283 0 . . ITGB4 3691 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 73751914 73751914 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000213 exon35 c.A4691G p.Y1564C TGGAGTACCAGCT . 23 10 20 0 . . CP 1356 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 148894184 148894184 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000096 exon18 c.A3034G p.S1012G CAGAACTATAAAC . 49 17 59 0 . . PFKM 5213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 48501972 48501972 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001166686 exon3 c.A200C p.K67T TTTTCAAAACTGG . 44 17 61 0 . . ELMSAN1 91748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 74189546 74189546 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_194278 exon10 c.A2579C p.Q860P TTGGTCTGGATCT . 50 20 64 0 . . TMEM132D 121256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 129566387 129566387 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_133448 exon7 c.A1840T p.M614L CCTGCATGAAGTC . 26 8 45 0 . . MIR1256 100302155 hgsc.bcm.edu 37 X 103165052 103165052 + RNA SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TCCAGTAAGTTTC . 5 5 15 0 . . POLE 5426 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 133202837 133202837 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006231 exon46 c.G6397T p.V2133L CATCCACCAGGCG . 10 4 20 0 . . DMXL1 1657 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 118486011 118486011 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005509 exon18 c.A4489C p.S1497R CATTCTAGTTTAC . 45 21 51 0 . . INTS2 57508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 59952332 59952332 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020748 exon19 c.C2548A p.Q850K CATTCTGAGTATA . 52 20 58 0 . . RPS24 6229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 79814760 79814760 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001142285 exon5 c.G862T p.G288C GGTCTGGGCCACT . 24 12 23 0 . . MYOM1 8736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 3067471 3067471 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003803 exon38 c.A4847T p.D1616V TGGTCGTCTGAGG . 22 10 48 0 . . GRIN2A 2903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 9857878 9857878 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc GRIN2A,NS,carcinoma,0,2 GRIN2A NM_000833 exon14 c.G3523T p.E1175X CCTCTTCATTATG . 41 16 55 0 . 0 IMP3 55272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 75932170 75932170 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018285 exon1 c.G340A p.V114M GGAGCACGGTGGG . 23 10 37 0 . . PTEN 5728 hgsc.bcm.edu;bcgsc.ca 37 10 89720807 89720807 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc PTEN,caecum,carcinoma,-1,1 PTEN NM_000314 exon8 c.T958G p.L320V CTTACTTTAACAA . 60 19 114 0 . -1 NUB1 51667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 151072981 151072981 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001243351 exon13 c.T1515A p.P505P CAATCCTGAAACC . 87 35 87 0 . . UBFD1 56061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 23578342 23578342 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_019116 exon6 c.A771C p.K257N CATAAAAAATGTG . 47 16 56 0 . . ATAD2B 54454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 24103602 24103602 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001242338 exon7 c.A808G p.I270V CTTCTATATCTCC . 42 16 67 0 . . KIF1B 23095 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 10327615 10327615 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_183416 exon6 c.A607T p.R203W AAAGCCAGGTATG . 20 12 54 0 . . SLC10A7 84068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 147363937 147363937 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032128 exon5 c.T433G p.L145V TTACCAAAAAACT . 69 54 235 0 . . SRGAP1 57522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 64505656 64505656 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020762 exon17 c.T2034C p.H678H GGCACATGTGAAT . 48 28 69 0 . . ZNF345 25850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 37368149 37368149 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001242476 exon4 c.T417G p.I139M GAGAATTCATACT . 37 14 73 0 . . ANKRD36BP2 645784 hgsc.bcm.edu 37 2 89072724 89072724 + RNA SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTTAAGGCATAAG . 14 4 12 0 . . RHPN1-AS1 78998 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 144450431 144450431 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTTGGAAGCAGGA . 88 31 151 0 . . FKBP8 23770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 18648519 18648519 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012181 exon6 c.G837A p.L279L GGCCGCCAGGTTG . 48 21 67 0 . . SYT1 6857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 79685872 79685872 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001135805 exon7 c.C436T p.L146F GGAAAACTTCAGT . 59 20 84 0 . . ZNF525 170958 hgsc.bcm.edu;ucsc.edu 37 19 53885337 53885337 + RNA SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTGGCAAGATCTT . 23 6 61 0 . . DNAH7 56171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 196822115 196822115 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018897 exon19 c.T2948C p.V983A GCTTGGACTTTGA . 33 17 55 0 . . PGBD2 267002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 249211007 249211007 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_170725 exon3 c.T224C p.L75P GTGTGCTGCATGC . 38 22 26 0 . . CASKIN1 57524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2233907 2233907 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020764 exon15 c.C1452A p.F484L CAGCTGGAACGCG . 51 21 78 0 . . WDR33 55339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 128471295 128471295 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018383 exon18 c.A3170C p.D1057A CTGTGATCAGGGG . 55 25 73 0 . . WWP2 11060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 69874107 69874107 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001270454 exon5 c.T419A p.F140Y CAATTTTCCTGGA . 34 16 49 0 . . TTC39A 22996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 51754561 51754561 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001144832 exon17 c.T1572C p.L524L CTCCATAAGCAGC . 21 10 54 0 . . ZNF74 7625 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 20760929 20760929 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003426 exon5 c.G1606A p.A536T GGCAGAGCCTTCA . 32 16 74 0 . . ZFHX3 463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 72831573 72831573 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006885 exon9 c.A5008G p.S1670G CAGCACTGCTTGG . 22 10 38 0 . . IREB2 3658 hgsc.bcm.edu 37 15 78770699 78770699 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc IREB2,rectum,carcinoma,0,3 IREB2 NM_004136 exon10 c.G1256T p.R419L TGTTTCGAAATGA . 38 2 61 0 . 0 TLE4 7091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 82188691 82188691 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007005 exon2 c.C133G p.Q45E CAGGCTCAATACC . 41 14 51 0 . . PPIEL 728448 hgsc.bcm.edu 37 1 40019783 40019783 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AAGGCAAGTAAAG . 6 4 7 0 . . IMPA1 3612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 82588479 82588479 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001144878 exon6 c.T515A p.V172E TTATTTACAGCAA . 178 70 275 0 . . HNRNPA1P10 664709 hgsc.bcm.edu 37 12 54678037 54678037 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTACTTTTCAGGT . 66 35 108 0 . . C1orf140 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 221507263 221507263 + RNA SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCTGCAGTATCCA . 81 26 53 0 . . MUC4 4585 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 195509900 195509900 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018406 exon2 c.G8551A p.V2851I CGGTGACAGGAAG . 97 38 149 0 . . WDR61 80349 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 78582401 78582401 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_025234 exon6 c.T360C p.Y120Y GGCCAGATACTGG . 49 25 76 0 . . COL8A2 1296 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 36565701 36565701 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005202 exon1 c.A143G p.Q48R CCTTTCTGCATGG . 55 17 70 0 . . SLX4 84464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 3656611 3656611 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032444 exon3 c.G624T p.L208F TAGGACCAATTGT . 43 23 45 0 . . ODF2 4957 hgsc.bcm.edu 37 9 131256844 131256844 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ODF2_ENST00000372814,NS,carcinoma,0,2 ODF2_ENST00000372814 NM_153435 exon17 c.T2000G p.L667R ACATCCTGAAGAT . 7 2 19 0 . 0 PTGER2 5732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 52781389 52781389 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000956 exon1 c.A123G p.I41M CCTCATAGCACTG . 41 21 73 0 . . SLMO2 51012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 57611616 57611616 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc SLMO2,NS,carcinoma,0,1 SLMO2 NM_016045 exon5 c.A375G p.T125T TTCTTGTGTCAAA . 44 23 75 0 . 0 MED28 80306 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 17621579 17621579 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_025205 exon2 c.A215G p.E72G AGGAAGAAATTCG . 76 7 83 0 . . IRS1 3667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 227661428 227661428 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005544 exon1 c.G2027A p.G676E CCACCTCCAATGT . 24 13 25 0 . . RET 5979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 43601837 43601837 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020630 exon5 c.C881T p.A294V TGGTGGCCACGCT . 20 10 47 0 . . TRAM1 23471 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 71495450 71495450 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014294 exon10 c.G1000T p.V334L TCTTCACAGCTGG . 24 11 62 0 . . ASCC2 84164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 30186459 30186459 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032204 exon19 c.G2101T p.G701W CTCACCCTTTCTT . 17 10 42 0 . . PSD3 23362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 18662106 18662106 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015310 exon6 c.A1836C p.E612D GCTAAATTCGTTG . 66 23 103 0 . . SYCP2 10388 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 58470491 58470491 + Splice_Site SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014258 exon20 c.1665+1G>A . AAGTTACTTTGTC . 41 15 51 0 . . NLRP5 126206 hgsc.bcm.edu 37 19 56527149 56527149 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc NLRP5_ENST00000390649,colon,carcinoma,0,1 NLRP5_ENST00000390649 NM_153447 exon4 c.G550A p.E184K GCTGCAGAGACAA . 41 2 49 0 . 0 CDH23 64072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 73569791 73569791 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_022124 exon59 c.C8937T p.L2979L CCTGCTCTCCAAC . 13 6 10 0 . . ARMC4 55130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 28196701 28196701 + Missense_Mutation SNP A A G rs150213638 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018076 exon17 c.T2501C p.I834T CGATCAATTATCC . 59 20 71 0 0.000 . MROH7 374977 hgsc.bcm.edu 37 1 55168304 55168304 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001039464 exon21 c.G3450A p.V1150V GTGTGTGAAGACC . 50 4 71 0 . . ZNF670-ZNF695 0 hgsc.bcm.edu 37 1 247130470 247130470 + RNA SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TCCCGACCTCAGG . 14 12 14 0 . . ZC3H15 55854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 187351163 187351163 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018471 exon1 c.A54G p.K18K GCAAAAAAAGAAG . 52 23 59 0 . . FRAS1 80144 hgsc.bcm.edu 37 4 79204119 79204119 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc FRAS1_ENST00000325942,NS,carcinoma,0,3 FRAS1_ENST00000325942 NM_001166133 exon12 c.C1253A p.S418X GCACATCAGGTGG . 19 3 46 0 . 0 B2M 567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 45007705 45007705 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004048 exon2 c.A152C p.H51P GGTTTCATCCATC . 55 18 109 0 . . RFC2 5982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 73661064 73661064 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_181471 exon5 c.A362C p.K121T AACATTTTAATTT . 56 29 66 0 . . PLD1 5337 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 171394504 171394504 + Splice_Site SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001130081 exon18 c.2001+1G>A . CAAGTACTTTTGT . 30 16 61 0 . . MDN1 23195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 90449961 90449961 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014611 exon32 c.A4585C p.K1529Q CCTTTTTTCCAAA . 100 56 86 0 . . VWA5B1 127731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 20656759 20656759 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001039500 exon10 c.C1341T p.V447V GTGGGTCATCAGG . 22 10 32 0 . . ROMO1 140823 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 34287659 34287659 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_080748 exon2 c.G105A p.A35A CGGGGCGCTCTTC . 58 25 83 0 . . MRPL35 51318 hgsc.bcm.edu 37 2 86437740 86437740 + Silent SNP C C T rs1052060 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc MRPL35,NS,carcinoma,0,1 MRPL35 NM_016622 exon4 c.C516T p.Y172Y CTGGTACGTTGAT . 42 2 69 0 . 0 PXMP4 11264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 32295759 32295759 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007238 exon4 c.T392C p.L131S CGTGACAACAGGT . 36 16 39 0 . . GZF1 64412 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 23345474 23345474 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_022482 exon1 c.A454G p.S152G GAGGTGAGCAGTG . 17 5 39 0 . . USP34 9736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 61523963 61523963 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014709 exon30 c.T4226G p.M1409R AATGCCATCAACA . 41 15 73 0 . . SLC12A1 6557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 48580290 48580290 + Nonsense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001184832 exon22 c.A2680T p.K894X AACCAGAAACTGG . 56 24 78 0 . . PKD1L2 114780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 81248669 81248669 + Silent SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001076780 exon3 c.T594A p.R198R TGAAGGACGCCCG . 32 13 51 0 . . CYP3A5 1577 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 99247744 99247744 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000777 exon12 c.A1365G p.L455L TCTGATTAGAGCA . 103 10 152 0 . . HIRA 7290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 19373053 19373053 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003325 exon12 c.T1320C p.D440D CCTGATATCTTCA . 20 10 26 0 . . IGF2R 3482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 160511104 160511104 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000876 exon44 c.A6624C p.G2208G AGTTGGAACCTCT . 68 18 80 0 . . PRG4 10216 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 186277684 186277684 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005807 exon7 c.A2833G p.T945A ACTACAACAGAAA . 94 54 76 0 . . SBF2 81846 hgsc.bcm.edu 37 11 9801363 9801363 + RNA SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCATCAGAATAAT . 18 4 15 0 . . FOXA2 3170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 22563329 22563329 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021784 exon2 c.A551C p.K184T AGCATCTTGTTGG . 54 21 50 0 . . KIAA1462 57608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 30315724 30315724 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020848 exon3 c.C3353G p.A1118G GTGCAGGCACTTG . 20 11 39 0 . . USP32P1 162632 hgsc.bcm.edu 37 17 16705681 16705681 + RNA SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AAGATGGCAGACA . 113 43 176 0 . . SLC2A2 6514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 170715825 170715825 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000340 exon11 c.T1442G p.F481C TTAAAAAATGTGA . 47 22 40 0 . . ZFYVE9 9372 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 52732339 52732339 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004799 exon6 c.A2291G p.E764G CCTGGGAGAACAT . 60 18 61 0 . . HSD17B14 51171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 49339067 49339067 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016246 exon2 c.A122C p.K41T CCATCCTTGTCGC . 22 9 36 0 . . DPY19L2P2 349152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 102920595 102920595 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGTTTCTTCATAA . 32 10 63 0 . . AGFG1 3267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 228401415 228401415 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001135187 exon10 c.T1352G p.F451C CTCCATTTGGAGG . 38 15 51 0 . . DNAJB13 374407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 73679407 73679407 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153614 exon6 c.A624G p.P208P CATCCCAGCAGAC . 48 12 43 0 . . AIM1 202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 107006479 107006479 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001624 exon16 c.C4610T p.S1537F TACGCTCTGTTCA . 40 10 45 0 . . REL 5966 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 61149151 61149151 + Silent SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002908 exon11 c.G1341C p.L447L ATTCCTGAGAATA . 35 17 53 0 . . JMJD1C 221037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 64966863 64966863 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032776 exon10 c.A4566T p.V1522V ACAGATTACAGTG . 29 17 89 0 . . ZFAND2A 90637 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 1197813 1197813 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_182491 exon2 c.A36C p.E12D AGTCTTTTCTGAA . 21 7 49 0 . . C15orf38-AP3S2 100526783 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 90431760 90431760 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001199058 exon7 c.T869C p.L290P TGGATGAGGTCCA . 20 12 56 0 . . SPTBN5 51332 hgsc.bcm.edu;broad.mit.edu 37 15 42168834 42168834 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016642 exon20 c.A3758G p.Q1253R TGCAGCTGCTCTC . 19 11 14 0 . . DNAJB6 10049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 157208727 157208727 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_058246 exon10 c.A916G p.K306E GGTGGCAAGAGGA . 32 13 79 0 . . CNTLN 54875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 17273829 17273829 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017738 exon6 c.A948C p.E316D GACTGAACTTATC . 35 10 78 0 . . CIDEB 27141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 24777048 24777048 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014430 exon3 c.C17A p.A6D TTCAGAGCTGAGA . 35 10 54 0 . . DDB2 1643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 47256385 47256385 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000107 exon6 c.A780G p.T260T GGCCACAGCCTCC . 33 16 35 0 . . MAP3K2 10746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 128087578 128087578 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006609 exon6 c.A385C p.N129H CTAAATTAGTAGC . 72 32 135 0 . . GPR21 2844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 125797792 125797792 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005294 exon2 c.A947G p.K316R GACTAAAGCGCCT . 32 13 39 0 . . VNN1 8876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 133034964 133034964 + Splice_Site SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004666 exon2 c.210+1G>A . ATGGTACCTGATC . 35 13 58 0 . . MARVELD3 91862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 71668439 71668439 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_052858 exon3 c.C939G p.I313M GCTCATCGCGGGG . 18 7 34 0 . . CARNS1 57571 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 67186527 67186527 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001166222 exon5 c.A665G p.Q222R TGGCCCAGCAGGG . 29 12 52 0 . . LINC00472 79940 hgsc.bcm.edu 37 6 72128283 72128283 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CACTAAAGCATGA . 46 9 44 0 . . ZHX2 22882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 123965153 123965153 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014943 exon3 c.A1403C p.E468A ATGCCGAGGTTTA . 16 5 16 0 . . HTR7P1 93164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 13157460 13157460 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GGAATTTCGACAT . 10 4 16 0 . . KIAA0319L 79932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 36020083 36020083 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024874 exon2 c.A10G p.R4G CCAGCCTCTTCTC . 47 21 76 0 . . KIR3DX1 90011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 55054772 55054772 + RNA SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ACAGGAGATCATA . 25 13 35 0 . . PUM1 9698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 31437700 31437700 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014676 exon14 c.A2144G p.D715G TAAAGGTCACTGC . 65 34 69 0 . . MPDZ 8777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 13176276 13176276 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003829 exon20 c.T2790C p.T930T ATTTATAGTAAAG . 44 22 81 0 . . GTF3C1 2975 hgsc.bcm.edu 37 16 27549552 27549552 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc GTF3C1,right_upper_lobe,carcinoma,+1,1 GTF3C1 NM_001520 exon3 c.G557A p.R186Q CTGGACCGGCCTA . 42 2 63 0 . +1 USP12 219333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 27669906 27669906 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_182488 exon4 c.A405C p.T135T AGCAATTGTATTT . 123 47 250 0 . . BCAP29 55973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 107258885 107258885 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001008405 exon8 c.C882A p.F294L TAAGTTCAGAAAA . 59 29 116 0 . . SEPT7P2 641977 hgsc.bcm.edu;bcgsc.ca 37 7 45805412 45805412 + RNA SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ATTCACCTAAAAG . 120 48 224 0 . . COG8 84342 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 69370532 69370532 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032382 exon2 c.A461T p.E154V AGTATTTCCAAAA . 23 5 32 0 . . ATP8B3 148229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 1811727 1811727 + Silent SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_138813 exon2 c.T9A p.T3T GGGGCCAGTGCCC . 14 10 16 0 . . FMO6P 388714 hgsc.bcm.edu 37 1 171116923 171116923 + RNA SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTAAAGGTTTTGG . 77 16 68 0 . . ATXN10 25814 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 22 46125305 46125305 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_013236 exon7 c.A729G p.R243R TTACAGAGTTACA . 15 7 40 0 . . CALCB 797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 15096669 15096669 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000728 exon3 c.T149G p.L50R TCCTGCTGGCTGC . 31 13 48 0 . . PLSCR3 57048 hgsc.bcm.edu 37 17 7297797 7297797 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CTCACCTGGAGCC . 14 6 35 0 . . PPFIBP2 8495 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 7669733 7669733 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003621 exon18 c.A1762C p.T588P GGCCACACCTTAT . 10 7 31 0 . . RSU1P2 100133308 hgsc.bcm.edu 37 10 45601831 45601831 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCAGTTTCTAAGA . 10 7 6 0 . . HOOK1 51361 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 60330334 60330334 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015888 exon17 c.C1657T p.H553Y GAAGCTCATATGT . 97 38 144 0 . . RNU6-81 100873780 hgsc.bcm.edu 37 2 132349305 132349305 + RNA SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCTCTTCTGTGAA . 94 38 187 0 . . UPP2 151531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 158977952 158977952 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001135098 exon7 c.T657G p.D219E AACGGATATAGCT . 71 24 116 0 . . RNU6-71 100873774 hgsc.bcm.edu 37 6 56406150 56406150 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ACATCCAGTGTTC . 59 14 68 0 . . YY1P2 647012 hgsc.bcm.edu 37 2 139655835 139655835 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGCAAGTATGAAG . 14 6 13 0 . . CNTN2 6900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 205027329 205027329 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005076 exon4 c.A236T p.E79V GTACCGAGATGAA . 33 21 31 0 . . ATXN10 25814 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 22 46125307 46125307 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_013236 exon7 c.T731G p.V244G ACAGAGTTACACT . 15 7 39 0 . . ZNF513 130557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 27601102 27601102 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_144631 exon4 c.C936T p.F312F CCAAGGGAATAGC . 21 14 51 0 . . PAX8 7849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 114002103 114002103 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_013952 exon4 c.G290A p.R97H TTCTGGCGTTTGT . 33 17 40 0 . . GAS5 60674 hgsc.bcm.edu 37 1 173836681 173836681 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GAAATATTGGTGA . 21 4 23 0 . . PLEKHG4 25894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67319000 67319000 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001129728 exon13 c.T2077G p.C693G TGCCACTGCCACC . 35 16 61 0 . . SNX14 57231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 86267770 86267770 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153816 exon7 c.T558G p.I186M AGATGGAATATCC . 83 19 80 0 . . HIRA 7290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 19344493 19344493 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003325 exon19 c.C2316T p.L772L TGGCAGGAGGATG . 12 8 20 0 . . OR4Q3 441669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 20216384 20216384 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_172194 exon1 c.C798G p.F266L CAGCTTCTCTGTG . 27 6 37 0 . . CTR9 9646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 10789426 10789426 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014633 exon14 c.A1760C p.K587T AGAAGAAGTTTGA . 57 25 89 0 . . NBPF10 100132406 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 145299899 145299899 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001039703 exon6 c.T948G p.T316T TCTAACTCAACTG . 613 151 663 1 . . MYLK 4638 hgsc.bcm.edu;ucsc.edu 37 3 123332738 123332738 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CTGCACTAGTATC . 61 16 65 0 . . SF3B2 10992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 65820161 65820161 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006842 exon2 c.G151A p.V51M GAGCTGGTGGAGC . 30 11 49 0 . . PDIA2 64714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 334725 334725 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006849 exon3 c.T473C p.L158P TGCGGCTGGAGGA . 19 5 22 0 . . DDX12P 440081 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 12 9571135 9571135 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCGCTCTGGACTC . 45 8 74 0 . . ECM2 1842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 95277473 95277473 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001393 exon4 c.T494C p.L165P CTGAGTAGAGAAT . 21 12 30 0 . . ODF2 4957 hgsc.bcm.edu 37 9 131256878 131256878 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153435 exon17 c.A2034G p.Q678Q GTGCCAAGACCAA . 12 6 17 0 . . ATP8B1 5205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 55336582 55336582 + Nonsense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005603 exon18 c.A2065T p.K689X ATACTTTATCCAG . 109 47 156 0 . . PPP1R16A 84988 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 145725522 145725522 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032902 exon4 c.T520A p.Y174N ATGCCCTATGACC . 42 14 66 0 . . SCUBE2 57758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 9047293 9047293 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020974 exon20 c.G2639A p.G880E CTGTTCCCTTCAT . 46 20 58 0 . . UBN1 29855 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 4920542 4920542 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001079514 exon10 c.A1337G p.Q446R CTCTCCAGAAGCT . 12 5 26 0 . . DCAF7 10238 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 61660866 61660866 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005828 exon5 c.T532C p.Y178H CAGGTCTATGATA . 63 27 108 0 . . MLLT4 4301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 168348587 168348587 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc MLLT4_ENST00000392108,NS,carcinoma,0,3 MLLT4_ENST00000392108 NM_001040000 exon27 c.A3587C p.K1196T CAGCGAAGATAAC . 19 9 37 0 . 0 COPA 1314 hgsc.bcm.edu;ucsc.edu 37 1 160269048 160269048 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001098398 exon18 c.C1701T p.H567H GATCCCGTGGTCC . 40 4 22 0 . . ZNRF3 84133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 29440787 29440787 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001206998 exon5 c.A653G p.D218G ACTTTGACATGGG . 20 14 75 0 . . CHRM2 1129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 136700368 136700368 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc CHRM2,colon,carcinoma,+2,1 CHRM2 NM_001006632 exon3 c.C756T p.D252D CAGTGACGATGGC . 25 11 45 0 . +2 ERBB2 2064 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 37883077 37883077 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004448 exon25 c.T2980G p.L994V GAGGACTTGGGCC . 18 8 34 0 . . RPS12 6206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 133137642 133137642 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001016 exon4 c.G174T p.E58D TGATGAGCCTATG . 19 9 36 0 . . PAPPA2 60676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 176811561 176811561 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc PAPPA2,colon,carcinoma,-1,2 PAPPA2 NM_020318 exon23 c.C5347G p.R1783G ACCTGCCGGGACC . 61 16 43 0 . -1 NCOR1 9611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 15976773 15976773 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001190440 exon27 c.A3829G p.R1277G ACTCCCTCATTGA . 59 28 80 0 . . HAMP 57817 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 35775743 35775743 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021175 exon2 c.A142G p.S48G AGGGCCAGCTGGA . 33 12 37 0 . . HPSE 10855 hgsc.bcm.edu;bcgsc.ca 37 4 84222115 84222115 + Silent SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001098540 exon11 c.C1470A p.S490S TTACTTGGAAAGT . 56 4 144 0 . . TYMP 1890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 50967621 50967621 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001257989 exon3 c.G361A p.V121M CACCCACACCCCC . 46 21 62 0 . . MCOLN1 57192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 7591678 7591678 + Missense_Mutation SNP G G C rs147878118 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020533 exon4 c.G437C p.R146P TGGGCCGGTATGC . 36 17 58 0 . . BCO2 83875 hgsc.bcm.edu 37 11 112065435 112065435 + Silent SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc BCO2,NS,carcinoma,0,1 BCO2 NM_031938 exon5 c.G693T p.L231L TGACCTGGATGGA . 33 2 58 0 . 0 ZNF630 57232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 47918881 47918881 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001037735 exon5 c.A950C p.K317T TAGGGTTTCTCCC . 27 24 33 0 . . GBP1P1 400759 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 89889824 89889824 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GGAACGTGTGAAA . 9 4 67 0 . . NHLRC2 374354 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 115657896 115657896 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_198514 exon6 c.T1067C p.L356S ACATTTTATGGAT . 108 45 229 0 . . CDC42BPB 9578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 103410551 103410551 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006035 exon30 c.C4085T p.P1362L TGGAATGGCTTCG . 19 6 29 0 . . PIK3R4 30849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 130452666 130452666 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014602 exon4 c.T1176C p.C392C GGAATCACAGTAT . 61 20 83 0 . . YEATS2 55689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 183528369 183528369 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018023 exon31 c.T4267C p.X1423R GACCAGTGAGCGG . 32 12 42 0 . . MRPS16 51021 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 75011619 75011619 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016065 exon2 c.A176C p.N59T TGACTGTTGGGCA . 47 21 76 0 . . PLRG1 5356 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 155463385 155463385 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002669 exon8 c.C641T p.P214L TTTCCAGGTTCCA . 9 7 46 0 . . PCDHGA4 56111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140736182 140736182 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018917 exon1 c.T1415C p.L472S CCATCTTATCTAT . 24 14 46 0 . . DMXL2 23312 hgsc.bcm.edu 37 15 51741202 51741202 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc DMXL2,bladder,carcinoma,0,1 DMXL2 NM_001174116 exon43 c.C9093A p.N3031K AATTCTGTTAGGG . 32 2 63 0 . 0 ERN1 2081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 62142632 62142632 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001433 exon9 c.T858C p.V286V TTTCCCAACATAC . 24 9 63 0 . . SHANK2 22941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 70332549 70332549 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_133266 exon10 c.G2085A p.E695E GTCGGTCTCGTAC . 30 13 35 0 . . KIAA0754 643314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 39879568 39879568 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015038 exon1 c.A3631T p.T1211S GTGGCCACCCTAG . 42 10 45 0 . . HAUS4 54930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 23416891 23416891 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001166269 exon8 c.G758A p.R253Q TTCAGCCGGTGTT . 59 31 79 0 . . FTSJD2 23070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 37441251 37441251 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015050 exon17 c.T1695C p.T565T GGGCACTGAGATT . 35 18 23 0 . . FAM64A 54478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 6351018 6351018 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_019013 exon3 c.C530T p.S177L GGCGATCAAGGCG . 28 15 57 0 . . ACVR1B 91 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 52377793 52377793 + Silent SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020328 exon6 c.C945A p.T315T TGGCACCTGGACA . 42 22 53 0 . . C1orf174 339448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 3807598 3807598 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_207356 exon3 c.A153C p.T51T CGTGTCTGTGGCT . 42 17 73 0 . . GABRA4 2557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 46930297 46930297 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000809 exon9 c.A1610G p.Y537C ACCCAATAAACCA . 103 28 109 0 . . STK39 27347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 169038515 169038515 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc .,2 . NM_013233 exon2 c.A294C p.K98N CTGGCATTTTTCC . 32 14 48 0 . 95 LARP4 113251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 50855117 50855117 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001170804 exon11 c.T1321C p.Y441H GGGGACTATGGTA . 34 15 56 0 . . TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 24826538 24826538 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014494 exon19 c.T4743G p.T1581T CAGTACTTCACCA . 39 31 65 0 . . HSPA12B 116835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 3730721 3730721 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_052970 exon11 c.C1148A p.A383D CGGCAGCCTGGGT . 18 5 47 0 . . MIR449C 100313923 hgsc.bcm.edu;ucsc.edu 37 5 54468121 54468121 + RNA SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCAACTAGCAACT . 28 14 40 0 . . PARD6G-AS1 100130522 hgsc.bcm.edu;ucsc.edu 37 18 77906016 77906016 + RNA SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ACGGGCAGCGGGG . 20 7 15 0 . . MACROD2 140733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 16025251 16025251 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001033087 exon13 c.C562A p.P188T AATGACCCAACAG . 61 19 105 0 . . CAPN1 823 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 64950279 64950279 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001198869 exon2 c.A107C p.K36T CCATCAAGTACCT . 18 10 48 0 . . LRP6 4040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 12279634 12279634 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002336 exon20 c.T4303A p.S1435T GAAGAGATCCTGA . 34 14 76 0 . . ATE1 11101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 123670610 123670610 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001001976 exon5 c.A394G p.N132D GTTTATTTATCAA . 26 6 31 0 . . CRYBG3 131544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 97594051 97594051 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153605 exon4 c.C4013G p.A1338G TTCAGGCTAATAC . 63 17 72 0 . . INPP5F 22876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 121587136 121587136 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014937 exon20 c.T3243A p.V1081V CCAGGTTGCTAGT . 56 22 87 0 . . PRMT7 54496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 68380156 68380156 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_019023 exon11 c.T1164C p.T388T CAGAACTGATCGA . 20 10 26 0 . . NDEL1 81565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 8354204 8354204 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001025579 exon6 c.A633C p.Q211H CGTCCAAGCATCA . 35 18 54 0 . . AXIN2 8313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 63526145 63526145 + Silent SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004655 exon11 c.G2481T p.V827V CGGGAGCACCGTC . 22 6 38 0 . . LAP3 51056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 17600083 17600083 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015907 exon10 c.A1082C p.D361A AGGTTGATAACAC . 56 8 77 0 . . OR5H14 403273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 97868425 97868425 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001005514 exon1 c.T196G p.L66V GGGAATTTAGCTT . 104 20 151 0 . . TMEM39B 55116 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 32560448 32560448 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018056 exon7 c.T991G p.S331A AGCACCTCCGTGA . 22 8 13 0 . . USP28 57646 hgsc.bcm.edu 37 11 113683165 113683165 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc USP28,NS,carcinoma,0,1 USP28 NM_020886 exon16 c.G1805T p.W602L TAGGCCCAATAGT . 24 2 31 0 . 0 TSNAX-DISC1 0 hgsc.bcm.edu 37 1 231678136 231678136 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CATACAATATTTA . 86 19 55 0 . . BCAN 63827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156622046 156622046 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_198427 exon8 c.A1304G p.E435G AATTTGAAACACA . 62 16 90 0 . . KIAA0754 643314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 39879575 39879575 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015038 exon1 c.A3638T p.E1213V CCCTAGAGGAATT . 40 9 46 0 . . DGKB 1607 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 14613961 14613961 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_145695 exon19 c.A1649C p.D550A TCAATGTCTTTTA . 31 13 49 0 . . CSMD1 64478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 2886950 2886950 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_033225 exon51 c.T7746G p.A2582A TACTTGAGCACCG . 19 8 31 0 . . PALLD 23022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 169824935 169824935 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001166108 exon15 c.A2500G p.I834V AAGCAGATCTCTC . 28 19 64 0 . . ZBTB11 27107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 101395620 101395620 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014415 exon1 c.C139G p.L47V AATACAGAGTCCC . 27 10 17 0 . . ORM1 5004 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 117086362 117086362 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000607 exon3 c.A322G p.R108G ATCTCCAGATACG . 23 8 37 0 . . HNRNPA1P10 664709 hgsc.bcm.edu 37 12 54675101 54675101 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CTAGTTTTTCTTT . 30 12 83 0 . . ARL8A 127829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 202107156 202107156 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_138795 exon3 c.T215C p.I72T CCCCCAATGTCCC . 38 27 31 0 . . UBE3D 90025 hgsc.bcm.edu 37 6 83667047 83667047 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc UBE2CBP,NS,carcinoma,0,1 UBE2CBP NM_198920 exon9 c.G1133A p.R378H TTCACACGGCGAA . 47 2 58 0 . 0 PUM1 9698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 31437697 31437697 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014676 exon14 c.T2147G p.L716R TTATAAAGGTCAC . 66 32 68 0 . . FSCN1 6624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 5632703 5632703 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003088 exon1 c.T136C p.W46R CAGATCTGGACGC . 35 14 53 0 . . GDPD4 220032 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 76954813 76954813 + Silent SNP G G A rs199737312 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_182833 exon12 c.C1167T p.S389S TTCAATGGATACT . 68 22 138 0 0.001 . LRP1 4035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 57584755 57584755 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002332 exon43 c.A7199C p.K2400T TGGACAAGATCGA . 14 7 16 0 . . DIP2C 22982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 387246 387246 + Silent SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014974 exon29 c.C3477A p.A1159A GCAGAAGGCACTG . 38 14 71 0 . . STARD4-AS1 100505678 hgsc.bcm.edu;ucsc.edu 37 5 111065333 111065333 + RNA SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AAGGCCTGCCCTG . 59 32 88 0 . . UBAP2 55833 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 33927945 33927945 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018449 exon20 c.T2221G p.F741V TGGAGAAGGTGGC . 24 10 47 0 . . TAS2R9 50835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 10962375 10962375 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_023917 exon1 c.T300G p.T100T GCAAGAAGTAAAC . 56 17 72 0 . . DCTN6 10671 hgsc.bcm.edu 37 8 30013852 30013852 + RNA SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTATCGCTCTACC . 40 12 56 0 . . BFSP1 631 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 17475396 17475396 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001195 exon8 c.T1321G p.F441V TCCCAAAGCCTTT . 27 15 27 0 . . PTDSS2 81490 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 488603 488603 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_030783 exon8 c.G810A p.L270L GTCCCTGAAGACG . 19 8 35 0 . . PCDHB7 56129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140554443 140554443 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018940 exon1 c.C2027T p.A676V CGGAGGCGGCCCC . 146 18 201 0 . . CHD7 55636 hgsc.bcm.edu 37 8 61713037 61713037 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc CHD7_ENST00000423902,NS,carcinoma,0,2 CHD7_ENST00000423902 NM_017780 exon5 c.G2329A p.A777T GCAGATGCTGCTG . 55 2 85 0 . 0 SNX5 27131 hgsc.bcm.edu 37 20 17936035 17936035 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014426 exon3 c.G241A p.E81K TTGTTTCAATAAG . 40 4 38 0 . . C1QBP 708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 5341560 5341560 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001212 exon2 c.A266C p.E89A TTAATTTCATCAC . 75 27 110 0 . . TSNAX-DISC1 0 hgsc.bcm.edu 37 1 231829484 231829484 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGACCTTTAAACC . 17 4 11 0 . . RNF19B 127544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 33409664 33409664 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_153341 exon6 c.A1361C p.K454T ACTCCTTTTCCGT . 46 22 62 0 . . RSU1P2 100133308 hgsc.bcm.edu 37 10 45601819 45601819 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CATCTTTCATCAG . 8 6 6 0 . . IARS 3376 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 95005505 95005505 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_013417 exon28 c.G2993T p.R998L TTTTTGCGAAGTT . 13 6 27 0 . . ZNF770 54989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 35274078 35274078 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014106 exon3 c.A1558C p.R520R CATGTCTTTTTAA . 41 16 72 0 . . TMEM245 23731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 111798539 111798539 + Silent SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032012 exon16 c.T2346C p.F782F GAGATGAAAAATC . 79 24 127 0 . . RNF138P1 379013 hgsc.bcm.edu;ucsc.edu 37 5 54826106 54826106 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CGAAATTTCTGGT . 66 14 91 0 . . HDAC6 10013 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 48661354 48661354 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006044 exon3 c.A170C p.K57T AAATGAAGAAGCT . 8 7 18 0 . . AIFM3 150209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 21333952 21333952 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001146288 exon18 c.G1631T p.G544V TCCAGGGGGATCT . 46 21 69 0 . . BLOC1S3 388552 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 45683097 45683097 + Silent SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_212550 exon2 c.C543A p.R181R CTGCCGCCTGCTG . 8 6 26 0 . . MUC4 4585 hgsc.bcm.edu 37 3 195511212 195511212 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc MUC4_ENST00000463781,NS,carcinoma,0,2 MUC4_ENST00000463781 NM_018406 exon2 c.C7239G p.H2413Q GGTGGCGTGACCT . 133 5 240 2 . 0 PUM2 23369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 20482963 20482963 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015317 exon11 c.A1465C p.S489R GGCTACTTGCAGT . 38 13 86 0 . . SNX30 401548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 115598546 115598546 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001012994 exon5 c.A671G p.E224G TGGGCGAGTCAGT . 14 6 38 0 . . FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 79360216 79360216 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001166133 exon40 c.A5527G p.T1843A CTTATCACGGTAA . 13 7 25 0 . . CYC1 1537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 145151139 145151139 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001916 exon3 c.G439T p.E147X GCTAAGGAGCTGG . 22 7 38 0 . . TRIM55 84675 hgsc.bcm.edu 37 8 67049405 67049405 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc TRIM55,trunk,malignant_melanoma,0,1 TRIM55 NM_184086 exon4 c.G583T p.D195Y CTGGAAGACACCT . 23 2 28 0 . 0 TM4SF18 116441 hgsc.bcm.edu;bcgsc.ca 37 3 149051002 149051002 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001184723 exon1 c.A168G p.S56S GATGCCTGAGAAA . 48 4 49 0 . . SRSF1 6426 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 56082914 56082914 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006924 exon4 c.A600C p.P200P ATAACTTGGACTT . 31 10 31 0 . . WWP1 11059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 87454934 87454934 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007013 exon18 c.A1925G p.Q642R GTCTGCAGATAAA . 48 22 99 0 . . AMZ2P1 201283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 62971482 62971482 + RNA SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GAGCCTCTGGAAA . 39 16 41 0 . . ZNF184 7738 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 27420544 27420544 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007149 exon6 c.T794G p.L265R TTTATAAGGTTTT . 55 24 48 0 . . CALCR 799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 93073026 93073026 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001164737 exon11 c.C794T p.A265V TTGCAGGCCATCA . 33 14 54 0 . . ANXA9 8416 hgsc.bcm.edu 37 1 150956496 150956496 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ANXA9,NS,carcinoma,0,1 ANXA9 NM_003568 exon5 c.G218T p.R73I GGAGCAGAGAGCA . 36 2 36 0 . 0 USPL1 10208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 31205128 31205128 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005800 exon4 c.A385G p.I129V AATTATATTGCTA . 44 20 59 0 . . C8orf33 65265 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 146277985 146277985 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_023080 exon2 c.T20C p.L7P GACATCTTGCTGG . 78 28 91 0 . . PCDHGA6 56109 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140755037 140755037 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc PCDHGA6_ENST00000517434,NS,carcinoma,0,1 PCDHGA6_ENST00000517434 NM_018919 exon1 c.G1387A p.E463K GTCCTTGAAAACA . 30 13 21 0 . 0 UHMK1 127933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 162467956 162467956 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_175866 exon1 c.T166G p.F56V AAGCAGTTCTTGC . 29 19 24 0 . . ZFAND2B 130617 hgsc.bcm.edu;broad.mit.edu 37 2 220072731 220072731 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_138802 exon4 c.T405C p.S135S TTGCTCTGGGGAG . 9 4 11 0 . . WDFY4 57705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 50025455 50025455 + Splice_Site SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020945 exon32 c.5505+1G>A . CAAAAGGTAGGAC . 34 12 45 0 . . ARHGAP19-SLIT1 0 hgsc.bcm.edu 37 10 98988750 98988750 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ACCATCTGGTGAA . 35 12 58 0 . . SLC27A5 10998 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 59009967 59009967 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012254 exon10 c.T1988A p.F663Y AGTACAAACAGAG . 25 10 37 0 . . CDH19 28513 hgsc.bcm.edu 37 18 64172343 64172343 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc CDH19,right_lower_lobe,carcinoma,0,1 CDH19 NM_021153 exon12 c.C2025A p.S675R CTCAGCGCTTGTG . 33 3 38 0 . 0 SLC5A10 125206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 18880179 18880179 + Silent SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001042450 exon9 c.C859A p.R287R GTGCAGCGATCAC . 33 7 35 0 . . PLXNA4 91584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 131887488 131887488 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_020911 exon12 c.C2503T p.R835C GCTGGCGCAGGGT . 69 33 79 0 . . PIK3R1 5295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 67569785 67569785 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_181523 exon4 c.T446C p.L149P CAACTCTATACAG . 29 9 42 0 . . TMCC1 23023 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 129546839 129546839 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001017395 exon3 c.C383A p.P128Q GCCTCTGGCTTGC . 36 14 50 0 . . CELF3 11189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 151687099 151687099 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007185 exon2 c.G199A p.A67T GCAGGGCGCTCTG . 60 47 52 0 . . BTNL9 153579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 180477173 180477173 + Silent SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_152547 exon4 c.C540G p.P180P GTACCCCAAGCCT . 38 21 37 0 . . PXN 5829 hgsc.bcm.edu;ucsc.edu 37 12 120649932 120649932 + RNA SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCAGAGGCTCTGG . 38 23 55 0 . . MUC4 4585 hgsc.bcm.edu 37 3 195512373 195512373 + Silent SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc .,4 . NM_018406 exon2 c.C6078A p.S2026S ACCAGTGGATGCT . 67 3 149 0 . 1505 HRH1 3269 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 11301253 11301253 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000861 exon3 c.A530G p.E177G GCCGAGAGGACAA . 7 5 26 0 . . MLLT4 4301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 168307886 168307886 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001040000 exon13 c.T1686C p.S562S GTCGTCTGCCTCT . 23 9 39 0 . . KIAA2018 205717 hgsc.bcm.edu 37 3 113376107 113376107 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc KIAA2018,colon,carcinoma,0,1 KIAA2018 NM_001009899 exon7 c.G4422A p.Q1474Q TTGTTGCTGTTGC . 23 5 22 1 . 0 TBCCD1 55171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 186269020 186269020 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001134415 exon7 c.A1593C p.E531D CAACCATTCATAA . 48 16 71 0 . . DHH 50846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 49483683 49483683 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021044 exon3 c.T1150C p.S384P GCCGAGAGTACCA . 28 13 51 0 . . PLGLA 285189 hgsc.bcm.edu 37 2 107003012 107003012 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TATGTGAAGCCAT . 92 42 158 0 . . ADCY3 109 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 25043665 25043665 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004036 exon20 c.C3180T p.H1060H GTCGTAGTGTGGT . 54 21 83 0 . . TMEM150C 441027 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 83411279 83411279 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001080506 exon7 c.A476G p.E159G CGTCCTTCATTCT . 25 22 56 0 . . PDIK1L 149420 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 26448622 26448622 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001243532 exon3 c.A580C p.S194R GGTCTAAGTAAAG . 22 14 43 0 . . TTLL9 164395 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 30486300 30486300 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001008409 exon4 c.C138G p.F46L CCGGTTCAAGACC . 33 17 26 0 . . GRIK5 2901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 42525501 42525501 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002088 exon14 c.C1823T p.S608L ATCTCCGAGCCCT . 36 17 63 0 . . C15orf38-AP3S2 100526783 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 90431767 90431767 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001199058 exon7 c.T862G p.L288V GGTCCAAGATTCC . 23 19 60 0 . . NAGLU 4669 hgsc.bcm.edu 37 17 40689478 40689478 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc NAGLU,colon,carcinoma,0,1 NAGLU NM_000263 exon2 c.G446A p.R149H GGGCCCGCTGGGA . 26 2 51 0 . 0 GIPC3 126326 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 3589910 3589910 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_133261 exon5 c.G787T p.A263S GAGCTGGGTAAGG . 40 20 66 0 . . RPS6KA3 6197 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 20183169 20183169 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004586 exon18 c.A1612G p.R538G AGTCTCTATGAAC . 48 41 93 0 . . KCNMA1 3778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 79011006 79011006 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001161352 exon3 c.A549C p.L183F AAAGACTAAGACA . 42 14 76 0 . . HBS1L 10767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 135358028 135358028 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001145207 exon5 c.A1567C p.K523Q CTAGCTTTGAACT . 70 15 111 0 . . NUP98 4928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 3774554 3774554 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005387 exon11 c.T1310G p.F437C GTTCCAAATCCTG . 42 19 89 0 . . EP300 2033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 41574848 41574848 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001429 exon31 c.G7133A p.S2378N TTGCTAGCAATCC . 38 14 62 0 . . GPR155 151556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 175346540 175346540 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001267051 exon2 c.T145C p.C49R CAAAGCATTCCAG . 26 17 35 0 . . LRP6 4040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 12279840 12279840 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002336 exon20 c.C4097T p.P1366L GGTGCTGGTTCTT . 64 23 95 0 . . BMP5 653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 55638874 55638874 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021073 exon4 c.G1000T p.D334Y AGGAGTCCTGATG . 84 46 86 0 . . MREG 55686 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 216809713 216809713 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018000 exon5 c.T518G p.L173R GCAATGAGACGGT . 18 9 19 0 . . CDK2 1017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 56361718 56361718 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_052827 exon2 c.A194G p.K65R TTGTCAAGTAAGT . 52 22 52 0 . . TMPRSS11B 132724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 69093790 69093790 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_182502 exon10 c.A1090G p.N364D AATCATTCTAGAA . 16 11 71 0 . . PAQR9 344838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 142681920 142681920 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_198504 exon1 c.T259G p.F87V TCCAGAAGTTGAG . 14 4 14 0 . . VNN1 8876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 133014343 133014343 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_004666 exon4 c.T646G p.F216V CATGGAAGAGTAT . 103 29 82 0 . . KIF3A 11127 hgsc.bcm.edu 37 5 132038286 132038286 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc KIF3A,colon,carcinoma,0,1 KIF3A NM_007054 exon12 c.G1641T p.K547N AACTTTCTTTAAC . 53 3 57 0 . 0 EDEM2 55741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 33722569 33722569 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018217 exon6 c.T674C p.L225P TCCCAGAGGCGCA . 28 12 28 0 . . LEO1 123169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 52242142 52242142 + Missense_Mutation SNP C C T rs367614131 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_138792 exon10 c.G1661A p.R554H ATTCGGCGCTGCT . 34 18 47 0 . . COL5A1 1289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 137650127 137650127 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000093 exon18 c.C1920T p.G640G GCCAGGCGAGAAG . 17 11 23 0 . . BRWD1 54014 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 40665822 40665822 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_018963 exon8 c.A746G p.D249G ATTTTATCACAGC . 18 16 71 0 . . ITIH1 3697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52812387 52812387 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_002215 exon3 c.A170C p.K57T GTTTGAAAGTCAA . 16 9 49 0 . . TSPAN12 23554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 120496757 120496757 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012338 exon2 c.T61G p.F21V CCCAAAAGAGCAG . 52 18 63 0 . . PJA2 9867 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 108714025 108714025 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014819 exon4 c.A1163C p.E388A TCTGTTTCCCTTT . 76 20 80 0 . . ZFC3H1 196441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 72057114 72057114 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_144982 exon1 c.T277C p.S93P GCTCAGACGCGTG . 49 19 95 0 . . ZFP2 80108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 178359047 178359047 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_030613 exon5 c.A733C p.N245H GAATGTAATGAAT . 69 41 68 0 . . OVCH1 341350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 29639246 29639246 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_183378 exon8 c.T928G p.S310A ACCTTGAGCCCAC . 133 58 215 0 . . RABL6 55684 hgsc.bcm.edu;broad.mit.edu 37 9 139734973 139734973 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001173988 exon15 c.A2192C p.X731S AGCTCTAGGCCGG . 11 5 9 0 . . TDO2 6999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 156831267 156831267 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_005651 exon6 c.T522G p.P174P AGTCCCTTATAAC . 30 24 105 0 . . SNX5 27131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 17928287 17928287 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_014426 exon11 c.T921G p.D307E TAAGAGATCCTGG . 40 20 99 0 . . ADAM30 11085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 120436670 120436670 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021794 exon1 c.G2290T p.A764S TTTTTGCTTTAGA . 103 55 165 0 . . UTRN 7402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 144744760 144744760 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_007124 exon4 c.A310T p.N104Y CAGAACAATGTAA . 21 15 40 0 . . ITPR3 3710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 33631568 33631568 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ITPR3_ENST00000374316,NS,carcinoma,0,2 ITPR3_ENST00000374316 NM_002224 exon11 c.C1059G p.C353W GTACTGCCTGGTG . 43 9 63 0 . 0 MCEE 84693 hgsc.bcm.edu;broad.mit.edu 37 2 71351654 71351654 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_032601 exon2 c.A60C p.Q20H GGGAGCTTGAAGT . 7 4 14 0 . . NOD2 64127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 50733483 50733483 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_022162 exon2 c.T158G p.F53C AAGGCTTCGAGAG . 63 28 131 0 . . APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 21235170 21235170 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000384 exon26 c.T4570C p.S1524P AGGAGGAGTTAAA . 39 18 63 0 . . GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 90079728 90079728 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc GPR98,NS,carcinoma,0,2 GPR98 NM_032119 exon67 c.A13507G p.S4503G CTAGTGAGCAGAA . 66 58 92 0 . 0 OR4N2 390429 hgsc.bcm.edu;bcgsc.ca 37 14 20295956 20295956 + Missense_Mutation SNP G G T rs75595142 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001004723 exon1 c.G349T p.V117L CTTGTTGTGATGG . 126 29 175 0 . . RECK 8434 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 36091179 36091179 + Silent SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_021111 exon10 c.T924G p.L308L TAAACTTTACAGC . 54 28 62 0 . . SRCAP 10847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30734428 30734428 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006662 exon24 c.C4037T p.P1346L CACGCCCCACGTT . 46 22 78 0 . . TBX3 6926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 115114210 115114210 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016569 exon6 c.C1007A p.S336Y TCATCAGAGGTCC . 30 13 52 0 . . DNAI1 27019 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 34500833 34500833 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_012144 exon11 c.T1015C p.C339R GCCCTCTGCTGGT . 33 10 48 0 . . MRTO4 51154 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 19584345 19584345 + Silent SNP A A G rs140351482 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_016183 exon6 c.A360G p.T120T ATACACAGAAATG . 28 7 55 0 . . VAMP5 10791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 85820227 85820227 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_006634 exon3 c.A298T p.S100C GACAGCAGTAGTG . 19 7 36 0 . . GPR98 84059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 90079731 90079731 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc GPR98,caecum,carcinoma,0,1 GPR98 NM_032119 exon67 c.A13510G p.R4504G GTGAGCAGAATCA . 66 58 89 0 . 0 UBR3 130507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 170734063 170734063 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_172070 exon4 c.A904G p.S302G TTAAAGAGCTCTG . 55 30 85 0 . . SAP30L 79685 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 153835544 153835544 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_024632 exon4 c.A508T p.S170C AACAAGAGTAGAC . 61 14 56 0 . . ATG2A 23130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 64679638 64679638 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015104 exon8 c.C1006G p.Q336E GCTGCTGGTTCAG . 29 15 56 0 . . MIR600HG 81571 hgsc.bcm.edu;ucsc.edu 37 9 125874010 125874010 + RNA SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TCCAGTTTGTCAG . 37 12 53 0 . . KRT10 3858 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 38976869 38976869 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_000421 exon3 c.G761T p.G254V CGCAGGCCGTTGA . 28 12 40 0 . . . 0 broad.mit.edu 37 1 5875969 5875984 + RNA DEL ATTGAAAGTAATGGCA ATTGAAAGTAATGGCA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTTGCCATTGAAA . 10 2 12 0 . . . 0 broad.mit.edu 37 1 16543166 16543179 + RNA DEL CTTACCCTGAGCCA CTTACCCTGAGCCA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GGAGCGCTTACCC . 32 11 40 0 . . ATAD3C 219293 broad.mit.edu 37 1 1389795 1389795 + Missense_Mutation SNP A A T rs1610766 by2hit2allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ATAD3C NM_001039211 exon4 c.A293T p.Y98F GCCGCTACATCGA . 43 9 57 0 . 23 CNN3 1266 broad.mit.edu;bcgsc.ca 37 1 95368720 95368720 + Frame_Shift_Del DEL G G - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CNN3 NM_001839 exon3 c.204delC p.G68fs CACTGAGCCTGGC . 23 8 116 0 . 23 GPATCH2 55105 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 217783668 217783668 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . GPATCH2 NM_018040 exon5 c.T1093G p.S365A CCATTGAAGTTGG . 140 31 119 1 . 53 HIST3H2BB 128312 broad.mit.edu 37 1 228646009 228646009 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . HIST3H2BB NM_175055 exon1 c.T179G p.M60R AGGCCATGGGCAT . 196 4 134 0 . 23 MFSD2A 84879 broad.mit.edu 37 1 40431616 40431616 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . MFSD2A NM_001136493 exon6 c.A683G p.D228G TCCAGGACCTCAA . 16 3 25 0 . 53 KIAA1804 0 broad.mit.edu 37 1 233464401 233464409 + In_Frame_Del DEL CCGAGCGCT CCGAGCGCT - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . KIAA1804 NM_032435 exon1 c.627_635del p.209_212del GCTCAACCGAGCG . 8 4 8 0 . 129 PLEKHA6 22874 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 204236606 204236606 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PLEKHA6 NM_014935 exon5 c.A277G p.K93E CACCTTTATAGTA . 31 18 38 0 . 115 THRAP3 9967 broad.mit.edu;bcgsc.ca 37 1 36759444 36759456 + Splice_Site DEL AATTTTAGGAGAA AATTTTAGGAGAA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . THRAP3 NM_005119 exon8 c.2031_2035del p.677_679del ATTTTCAATTTTA . 39 7 101 0 . 93 TRNP1 388610 broad.mit.edu 37 1 27320310 27320310 + Frame_Shift_Del DEL G G - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . TRNP1 NM_001013642 exon1 c.33delG p.P11fs CGGCCCGGGGGCC . 6 2 13 0 . 2 . 0 broad.mit.edu;bcgsc.ca 37 10 80510398 80510398 + RNA DEL T T - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTGCGGTTTTTGC . 36 14 52 0 . . HNRNPF 3185 broad.mit.edu 37 10 43882519 43882526 + Frame_Shift_Del DEL ACATTCCG ACATTCCG - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . HNRNPF NM_001098204 exon4 c.807_814del p.269_272del GGTCATACATTCC . 13 5 18 0 . 57 HPSE2 60495 broad.mit.edu 37 10 100904026 100904026 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . HPSE2 NM_001166246 exon3 c.C579A p.F193L ATTGGAGAATTGC . 12 3 19 0 . 203 MGEA5 10724 broad.mit.edu;bcgsc.ca 37 10 103577755 103577755 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . MGEA5 NM_001142434 exon1 c.A25G p.T9A CCAACGTCGCTTG . 20 5 28 0 . 53 PPP3CB 5532 broad.mit.edu 37 10 75255630 75255630 + Silent SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PPP3CB NM_001142354 exon1 c.G18T p.P6P CCGGGCCGGCTCC . 17 10 16 0 . 68 C11orf88 399949 broad.mit.edu;bcgsc.ca 37 11 111385536 111385536 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . C11orf88 NM_001100388 exon1 c.T27A p.P9P AGAACCTAGCGGC . 39 14 42 1 . 37 DLAT 1737 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 111933226 111933226 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . DLAT NM_001931 exon14 c.G1911A p.K637K TAGAAAGTACCTT . 90 35 156 1 . 39 FADS1 3992 broad.mit.edu 37 11 61584238 61584238 + Missense_Mutation SNP C C A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . FADS1 NM_013402 exon1 c.G164T p.R55M GCTGGCCTGGCGA . 14 5 22 0 . 19 FAM99B 0 broad.mit.edu 37 11 1706483 1706491 + RNA DEL CCAGGCTGA CCAGGCTGA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CAGCCTCCAGGCT . 11 2 18 0 . . KBTBD4 55709 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 47594521 47594521 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . KBTBD4 NM_018095 exon4 c.T1566G p.I522M CACCTTAATACCT . 28 6 51 0 . 55 MALAT1 0 broad.mit.edu;ucsc.edu 37 11 65268621 65268621 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . MALAT1 . . . . TGTTTTTACTTCC . 45 25 91 0 . 3 NLRX1 79671 broad.mit.edu;bcgsc.ca 37 11 119050924 119050924 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . NLRX1 NM_024618 exon7 c.T2194G p.L732V GTGAACTTGGCCT . 8 3 21 0 . 128 RDX 5962 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 110124822 110124822 + Missense_Mutation SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . RDX NM_001260493 exon9 c.T808A p.Y270N GTGCATAAAACAC . 40 18 71 0 . 59 . 0 broad.mit.edu;ucsc.edu 37 11 130731697 130731697 + RNA SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AATTTCCGTTGAA . 41 15 58 0 . . A2M 2 broad.mit.edu 37 12 9264989 9264989 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . A2M NM_000014 exon3 c.C414A p.Y138X TGGTTTGTAGATT . 61 3 91 0 . 180 . 144535 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 96883547 96883547 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCCGAGGACTCAT . 77 31 139 0 . . PSMD9 5715 broad.mit.edu 37 12 122326825 122326825 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PSMD9 NM_001261400 exon1 c.C63T p.S21S TGTCAGCGACGTC . 38 3 68 0 . 8 RARG 5916 broad.mit.edu 37 12 53607314 53607314 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . RARG NM_000966 exon8 c.A984T p.T328T CAGCCCTGTCTCG . 12 3 21 0 . 53 TIMELESS 8914 broad.mit.edu 37 12 56822671 56822671 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . TIMELESS NM_003920 exon11 c.C1300T p.R434C ACCGGCGTGCCCA . 15 4 17 0 . 107 . 220416 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 46802187 46802187 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CTGTATCTATGAA . 51 22 85 0 . . ADAM21 8747 broad.mit.edu;bcgsc.ca 37 14 70924269 70924269 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ADAM21 NM_003813 exon2 c.G53T p.W18L TGCTCTGGCTTGG . 11 6 27 0 . 181 AHNAK2 113146 broad.mit.edu 37 14 105414880 105414880 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . AHNAK2 NM_138420 exon7 c.A6908G p.D2303G GACATGTCCCCCT . 74 3 131 0 . 719 ASB2 51676 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 94401066 94401066 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ASB2 NM_001202429 exon10 c.T1844C p.L615P TCTAGGAGTTTTA . 58 25 81 2 . 71 . 0 broad.mit.edu 37 14 106382684 106382684 + RNA SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CACTGTGGGCATA . 74 29 127 1 . . . 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 106993973 106993973 + RNA SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCACTCCAGCCCC . 48 23 114 0 . . PSMC1 5700 broad.mit.edu;bcgsc.ca 37 14 90736595 90736609 + In_Frame_Del DEL CGCATCTTTCAGATT CGCATCTTTCAGATT - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PSMC1 NM_002802 exon10 c.1087_1101del p.363_367del AAGAAGCGCATCT . 28 6 68 0 . 27 . 0 broad.mit.edu 37 16 28468222 28468222 + Silent SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ATCAGTTATAGAA . 63 16 122 0 . . PDP2 57546 broad.mit.edu 37 16 66918662 66918662 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PDP2 NM_020786 exon2 c.T475C p.Y159H TTCTACTATGTGG . 9 3 10 0 . 39 LOC283914 0 broad.mit.edu;bcgsc.ca 37 16 34624256 34624256 + RNA SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCTGAACCATCTG . 11 3 19 0 . . . 0 broad.mit.edu 37 16 29449546 29449582 + RNA DEL TAAACATTAAAAGACAGTTACTTTCAGCTGGCCAAAA TAAACATTAAAAGACAGTTACTTTCAGCTGGCCAAAA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AGCTATTAAACAT . 158 5 329 0 . . ABCA9 10350 broad.mit.edu;bcgsc.ca 37 17 67014691 67014706 + Frame_Shift_Del DEL GGGATAAAGCTAATAC GGGATAAAGCTAATAC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ABCA9 NM_080283 exon20 c.2615_2630del p.872_877del AGTTGAGGGATAA . 23 6 49 0 . 192 ABCC3 8714 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 48753044 48753044 + Silent SNP C C A rs371874263 alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ABCC3 NM_003786 exon21 c.C2767A p.R923R GTACCCCGGAGGC . 13 8 24 0 . 138 ELP5 23587 broad.mit.edu;bcgsc.ca 37 17 7156115 7156124 + Frame_Shift_Del DEL CTCTTGAAGG CTCTTGAAGG - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_203414 exon2 c.121_130del p.41_44del CGCAGTCTCTTGA . 19 6 47 0 . . FLII 2314 broad.mit.edu 37 17 18156676 18156676 + Missense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . FLII NM_002018 exon9 c.A952T p.N318Y CCAGGTTGGTGAG . 11 4 30 0 . 79 PER1 5187 broad.mit.edu;bcgsc.ca 37 17 8051527 8051527 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PER1 NM_002616 exon9 c.A1099C p.S367R GGCAGCTGGGTGT . 12 6 19 0 . 104 PER1 5187 broad.mit.edu 37 17 8051559 8051559 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PER1 NM_002616 exon9 c.A1067G p.D356G CTCTTGTCAGGGG . 12 4 16 0 . 104 LOC100130950 0 broad.mit.edu 37 17 5096766 5096766 + RNA DEL A A - rs373321272 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AAAAATAAAAAAA . 5 1 17 0 . . CDH2 1000 broad.mit.edu 37 18 25565702 25565702 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CDH2 NM_001792 exon12 c.G1765A p.G589R GCGTTCCTGTTCC . 14 4 32 0 . 194 FBL 2091 broad.mit.edu 37 19 40331279 40331279 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . FBL NM_001436 exon2 c.C159T p.G53G TCCACCGCCGCCG . 62 5 82 2 . 37 PPP5C 5536 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 46891939 46891939 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PPP5C NM_006247 exon11 c.G1306A p.V436M TACGAGGTGGCTC . 12 5 24 0 . 44 SPHK2 56848 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 49132945 49132945 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . SPHK2 NM_020126 exon7 c.A1880C p.E627A AGGTGGAGTATGG . 13 5 26 0 . 62 SPHK2 56848 broad.mit.edu;ucsc.edu 37 19 49132949 49132949 + Nonsense_Mutation SNP T T A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . SPHK2 NM_020126 exon7 c.T1884A p.Y628X GGAGTATGGGCCG . 13 5 25 0 . 62 ZNF177 7730 broad.mit.edu;bcgsc.ca 37 19 9491917 9491917 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ZNF177 NM_001172651 exon6 c.A910C p.R304R CACATGAGATCTC . 30 12 49 1 . 57 LIMS1 0 broad.mit.edu 37 2 109150329 109150329 + RNA SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . LIMS1 . . . . GCACCCAGCGGTG . 11 4 8 0 . 38 . 0 broad.mit.edu 37 2 65894933 65894933 + RNA DEL A A - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AGGTTTAAAAAAA . 8 2 3 0 . . KCNF1 3754 broad.mit.edu;bcgsc.ca 37 2 11053983 11053983 + Frame_Shift_Del DEL C C - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . KCNF1 NM_002236 exon1 c.1431delC p.I477fs CTTCATCCCCCTC . 32 8 50 0 . 70 MERTK 10461 broad.mit.edu 37 2 112656268 112656268 + Translation_Start_Site SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . MERTK . . . . CGTCCATCTGTCC . 5 2 9 0 . 112 SPTBN1 0 broad.mit.edu;bcgsc.ca 37 2 54857084 54857084 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . SPTBN1 NM_003128 exon15 c.A2725G p.N909D GTGGTGAACCAGA . 6 3 20 0 . 378 SRD5A2 6716 broad.mit.edu 37 2 31751121 31751121 + RNA SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCACTCAGAATCC . 29 8 34 0 . . STRN 6801 broad.mit.edu;bcgsc.ca 37 2 37084999 37084999 + Splice_Site SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . STRN NM_003162 exon14 c.G1837C p.E613Q ATGTACCTTTAGT . 14 7 50 0 . 71 WDFY1 57590 broad.mit.edu;bcgsc.ca 37 2 224758968 224758968 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . WDFY1 NM_020830 exon8 c.G814A p.D272N TAACATCCATGTT . 34 16 47 0 . 46 ADAM33 80332 broad.mit.edu 37 20 3654549 3654549 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ADAM33 NM_025220 exon9 c.A748G p.T250A CCAGAGTCCTGAG . 11 7 17 0 . 76 MMP9 4318 broad.mit.edu;bcgsc.ca 37 20 44643002 44643008 + Splice_Site DEL GCCCGCA GCCCGCA - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . MMP9 . . . . GCGCCTGCCCGCA . 28 7 43 0 . 84 RALGAPB 57148 broad.mit.edu 37 20 37117260 37117260 + Splice_Site SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . RALGAPB NM_020336 exon2 c.A185C p.E62A ACAAAGAAGTAAG . 17 4 46 0 . 134 SLC23A2 9962 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 4839936 4839936 + Splice_Site SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . SLC23A2 NM_203327 exon16 c.A1719C p.P573P CGTACCTGGGATG . 78 31 133 0 . 62 BAGE2 85319 broad.mit.edu 37 21 11043037 11043039 + RNA DEL TGC TGC - rs149525628 bycluster TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGTTGTTGCTGTT . 6 2 5 0 . . BTG3 10950 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 18966436 18966436 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . BTG3 NM_001130914 exon6 c.A866C p.N289T TGAGGATTAATCC . 36 23 91 0 . 27 PFKL 5211 broad.mit.edu;bcgsc.ca 37 21 45746699 45746699 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PFKL NM_002626 exon22 c.T2297G p.L766R GGGAGCTGGAGCA . 23 17 94 3 . 65 CDC42EP1 11135 broad.mit.edu 37 22 37964736 37964736 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CDC42EP1 NM_152243 exon3 c.A1085G p.Q362R CGCCCCAGGCAGG . 8 3 14 0 . 53 EP300 2033 broad.mit.edu 37 22 41513219 41513219 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . EP300 NM_001429 exon2 c.C123G p.H41Q GGAGCACGACTTA . 35 12 52 0 . 367 LOC96610 0 broad.mit.edu 37 22 22663052 22663052 + RNA SNP T T C rs4043415 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTGGGGTTCCTGT . 87 6 221 1 . . TOP3B 8940 broad.mit.edu 37 22 22318376 22318376 + Missense_Mutation SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . TOP3B NM_003935 exon11 c.A1123C p.I375L GGTTGATACCTTC . 10 3 15 0 . 107 LOC220729 0 broad.mit.edu;bcgsc.ca 37 3 197351427 197351427 + RNA SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ACATCCAGATCGT . 119 24 126 0 . . . 285311 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 126916189 126916189 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CAGCTGGACCCGG . 57 13 63 0 . . FAM86DP 0 broad.mit.edu 37 3 75471400 75471400 + RNA SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CAGAAGCTGAAAT . 48 3 126 0 . . ITPR1 3708 broad.mit.edu 37 3 4878503 4878503 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ITPR1 NM_001168272 exon60 c.G8029T p.V2677F TCATTGGTCAGCA . 25 4 44 0 . 659 MON1A 84315 broad.mit.edu;bcgsc.ca 37 3 49967045 49967045 + Frame_Shift_Del DEL T T - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . MON1A NM_032355 exon1 c.275delA p.N92fs CACCTGTTTCTCA . 12 9 37 0 . 41 . 0 broad.mit.edu 37 3 192871852 192871852 + RNA DEL T T - rs34765749 bycluster TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTTAACTTTTTTT . 7 3 4 0 T|0.500;-|0.500 . ST6GAL1 6480 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 186760575 186760575 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ST6GAL1,right_lower_lobe,carcinoma,+2,1 ST6GAL1 NM_003032 exon3 c.A84C p.E28D GAAGGAAAAGAAG . 42 17 58 0 . 36 CWH43 80157 broad.mit.edu 37 4 48988658 48988658 + Translation_Start_Site SNP T T G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CWH43 . . . . AGGGAATAAAGGA . 26 3 23 0 . 101 HOPX 84525 broad.mit.edu;bcgsc.ca 37 4 57547691 57547691 + Translation_Start_Site SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . HOPX . . . . CGTCACTATCTTC . 2 2 15 0 . 28 GUSBP1 0 broad.mit.edu 37 5 21491214 21491224 + RNA DEL GAACCTGGGAG GAACCTGGGAG - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TCACTTGAACCTG . 169 20 194 0 . . RAD50 10111 broad.mit.edu;bcgsc.ca 37 5 131931434 131931434 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . RAD50 NM_005732 exon13 c.G2139A p.K713K ACTCAAGTCAACA . 24 13 24 0 . 246 . 0 broad.mit.edu;bcgsc.ca 37 5 70741487 70741487 + RNA SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AATTTTCTCTGTG . 50 14 59 0 . . ZC3H12D 340152 broad.mit.edu 37 6 149772005 149772005 + Silent SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ZC3H12D NM_207360 exon6 c.A1398G p.S466S GTACACTGAAAGT . 9 4 12 0 . 21 INHBA 3624 broad.mit.edu;bcgsc.ca 37 7 41729636 41729636 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . INHBA NM_002192 exon3 c.G893A p.R298Q GACTGCCGGGCCT . 15 10 39 1 . 118 RABGEF1 154881 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 66270137 66270137 + Missense_Mutation SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . RABGEF1 NM_014504 exon8 c.A831C p.E277D CATTGAAATGGAT . 36 10 59 1 . 56 LINC00174 0 broad.mit.edu 37 7 65842005 65842005 + RNA SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCTGGGCTTGTGG . 9 4 10 0 . . CPSF1 29894 broad.mit.edu;bcgsc.ca 37 8 145618578 145618578 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CPSF1 NM_013291 exon38 c.C4287T p.I1429I GTCCAGGATCTGC . 30 10 33 1 . 92 . 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 26906407 26906407 + RNA SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCGGTTTTTGTCA . 32 15 41 0 . . PARP10 84875 broad.mit.edu 37 8 145059959 145059959 + Silent SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PARP10 NM_032789 exon3 c.T366G p.P122P ACAGCAAGGCTGT . 19 3 30 0 . 57 BNIP3L 0 broad.mit.edu 37 8 26240232 26240232 + RNA SNP A A C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . BNIP3L . . . . AGGTAGAAAACAG . 5 2 22 1 . 7 LOC254896 8794 broad.mit.edu;bcgsc.ca 37 8 22960538 22960569 + Frame_Shift_Del DEL CCTACCGTTAGGGAACTCTGGGGACAGAGCGC CCTACCGTTAGGGAACTCTGGGGACAGAGCGC - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCGCTTCCTACCG . 37 6 78 0 . . C9orf131 138724 broad.mit.edu;bcgsc.ca 37 9 35042287 35042287 + Frame_Shift_Del DEL G G - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . C9orf131 NM_001040410 exon1 c.36delG p.K12fs GGCTAAGGGGGAT . 18 8 32 0 . 71 CNTRL 11064 broad.mit.edu;bcgsc.ca 37 9 123937475 123937475 + Silent SNP A A T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CNTRL NM_007018 exon41 c.A6927T p.T2309T CCTCACAGAGGAC . 31 10 40 1 . 161 GARNL3 84253 broad.mit.edu 37 9 130026087 130026087 + Translation_Start_Site SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . GARNL3 . . . . TGAAATGGTGGAA . 12 5 8 0 . 83 LCN12 286256 broad.mit.edu 37 9 139848199 139848199 + Missense_Mutation SNP A A G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . LCN12 NM_178536 exon3 c.A299G p.Q100R CAGCCCAGCCTGG . 38 5 61 0 . 11 TOR4A 54863 broad.mit.edu 37 9 140174311 140174311 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_017723 exon2 c.C1170T p.R390R GGCCCGCGCGGAG . 4 3 13 0 . . ARSD 414 broad.mit.edu 37 X 2836254 2836254 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ARSD NM_001669 exon5 c.G454A p.G152S TCACACCCTGGTG . 16 3 25 0 . 47 STS 412 broad.mit.edu;bcgsc.ca 37 X 7177472 7177482 + Frame_Shift_Del DEL TGGGATCTCTT TGGGATCTCTT - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . STS NM_000351 exon5 c.480_490del p.160_164del TTTCTATGGGATC . 6 4 17 0 . 64 ADCK2 90956 ucsc.edu 37 7 140373610 140373610 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ADCK2 NM_052853 exon1 c.G480A p.S160S GTTTTCGGAGGCT . 33 4 45 0 . 37 PSKH2 85481 ucsc.edu;bcgsc.ca 37 8 87060845 87060845 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PSKH2 NM_033126 exon3 c.C1004T p.A335V GATATGGCCCTCT . 43 5 79 0 . 79 FERMT3 83706 ucsc.edu;bcgsc.ca 37 11 63986820 63986820 + Missense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . FERMT3 NM_031471 exon7 c.C884T p.A295V TGTTTGCCGCCCT . 32 4 28 0 . 51 ESPL1 9700 ucsc.edu 37 12 53677189 53677189 + Nonsense_Mutation SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ESPL1 NM_012291 exon16 c.C2944T p.Q982X AAATGGCAGGTTC . 31 4 61 1 . 158 C16orf93 90835 ucsc.edu 37 16 30770351 30770351 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . C16orf93 NM_001014979 exon8 c.C799A p.P267T CTGGTGGGGCCAC . 33 4 35 0 . 33 RNF165 494470 ucsc.edu 37 18 44015312 44015312 + Silent SNP C C T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . RNF165 NM_152470 exon3 c.C438T p.G146G CTTCGGCCAACTG . 25 4 34 0 . 34 GZF1 64412 ucsc.edu 37 20 23345235 23345235 + Missense_Mutation SNP G G T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . GZF1 NM_022482 exon1 c.G215T p.G72V TGGATGGTACTAG . 51 5 93 0 . 61 CNN3 1266 bcgsc.ca 37 1 95368702 95368706 + Frame_Shift_Del DEL GTTGA - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GTTGA - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CNN3 NM_001839 exon3 c.218_222del p.73_74del GGACTCGTTGACC . 25 0 119 0 . 23 CNN3 1266 bcgsc.ca 37 1 95368708 95368712 + Frame_Shift_Del DEL CTTCT - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CTTCT - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CNN3 NM_001839 exon3 c.212_216del p.71_72del GTTGACCTTCTTC . 20 5 120 0 . 23 PRDM9 56979 bcgsc.ca 37 5 23527721 23527727 + Frame_Shift_Del DEL CGCAATA - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CGCAATA - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc PRDM9,brain,primitive_neuroectodermal_tumour-medulloblastoma,-1,1 PRDM9 NM_020227 exon11 c.2524_2530del p.842_844del GGCTTTCGCAATA . 81 6 74 0 . 344 PRDM9 56979 bcgsc.ca 37 5 23527730 23527738 + In_Frame_Del DEL TCACACCTC - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 TCACACCTC - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PRDM9 NM_020227 exon11 c.2533_2541del p.845_847del AATAAGTCACACC . 77 6 79 0 . 344 CYP2E1 1571 bcgsc.ca 37 10 135340926 135340949 + In_Frame_Del DEL CCTGCTGGTGTGGGCGGCCTTCCT - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CCTGCTGGTGTGGGCGGCCTTCCT - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CYP2E1 NM_000773 exon1 c.27_50del p.9_17del CGTGGCCCTGCTG . 25 6 72 0 . 69 H19 283120 bcgsc.ca 37 11 2016914 2016914 + RNA DEL G - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . H19 . . . . GCCGCAGGGGGTG . 19 7 38 0 . 1 MSRB3 253827 bcgsc.ca 37 12 65672596 65672601 + In_Frame_Del DEL CCTCTG - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CCTCTG - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc MSRB3_ENST00000355192,rectum,carcinoma,+2,1 MSRB3 NM_198080 exon1 c.48_53del p.16_18del CCTCTCCCTCTGC . 66 3 76 0 . 80 EMC4 51234 bcgsc.ca 37 15 34517724 34517724 + Frame_Shift_Del DEL T - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TCTTGGTTTGGTT . 65 11 92 0 . . CLPX 10845 bcgsc.ca 37 15 65447200 65447212 + Frame_Shift_Del DEL CATCTAGGCTATG - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CATCTAGGCTATG - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CLPX NM_006660 exon11 c.1519_1531del p.507_511del TTTTCTCATCTAG . 30 3 61 0 . 49 BAIAP3 8938 bcgsc.ca 37 16 1393409 1393430 + Frame_Shift_Del DEL CAGCCGCCACCATCAAACCTGC - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CAGCCGCCACCATCAAACCTGC - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . BAIAP3 NM_003933 exon15 c.1386_1407del p.462_469del GGTCAGCAGCCGC . 26 3 67 0 . 88 FUS 2521 bcgsc.ca 37 16 31195693 31195698 + In_Frame_Del DEL GGTGGA - - novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GGTGGA - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . FUS NM_004960 exon5 c.499_504del p.167_168del AGTGGTGGTGGAG . 23 7 43 0 . 52 . 0 bcgsc.ca 37 1 26536413 26536413 + RNA SNP C T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CTGCTCCTCCAAC . 25 10 31 0 . . . 0 bcgsc.ca 37 1 146791337 146791337 + RNA SNP C A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTCTGACGAAAAG . 14 8 25 0 . . . 644214 bcgsc.ca 37 1 224044438 224044438 + RNA SNP G T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCCTTGGAGTCGC . 15 4 25 0 . . . 0 bcgsc.ca 37 2 34628769 34628769 + RNA SNP T A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCGGTTTTTGGCA . 28 14 44 0 . . CEP68 23177 bcgsc.ca 37 2 65299502 65299502 + Silent SNP G A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CEP68 NM_015147 exon3 c.G1272A p.R424R GGACCGGCTGACT . 14 3 21 0 . 69 . 0 bcgsc.ca 37 2 114164265 114164265 + RNA SNP T C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTATCCTGGTATC . 60 22 127 0 . . . 0 bcgsc.ca 37 2 216743614 216743614 + RNA SNP A C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCAAAAATCGCAA . 23 11 56 0 . . STK11IP 114790 bcgsc.ca 37 2 220474092 220474092 + Missense_Mutation SNP T G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . STK11IP NM_052902 exon17 c.T1967G p.L656R AGCTGCTTGCCGT . 61 27 71 0 . 152 . 266724 bcgsc.ca 37 2 222828423 222828423 + RNA SNP G C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CTGAACGAGAAGG . 13 3 24 0 . . MIR1324 100302212 bcgsc.ca 37 3 75679969 75679969 + RNA SNP G A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCCTCTGGGTACC . 378 17 680 1 . . CLDN1 9076 bcgsc.ca 37 3 190030784 190030784 + Missense_Mutation SNP G T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CLDN1 NM_021101 exon2 c.C265A p.L89I CCAGGAGGATGCC . 47 4 45 0 . 23 . 53409 bcgsc.ca 37 4 24659835 24659835 + RNA SNP T G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TATTGTTTTCAGG . 28 8 31 0 . . . 0 bcgsc.ca 37 4 70013196 70013196 + RNA SNP T C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTTTTCTGGATCG . 16 12 64 0 . . STOX2 56977 bcgsc.ca 37 4 184931986 184931986 + Silent SNP C T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . STOX2 NM_020225 exon3 c.C1995T p.P665P GGGCCCCGCTGCT . 18 3 59 0 . 142 GUSBP1 0 bcgsc.ca 37 5 21483021 21483021 + RNA SNP C T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGGGCACGTGCTG . 556 88 463 0 . . . 0 bcgsc.ca 37 5 34192504 34192504 + RNA SNP G A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GGACAAGGCCACC . 955 24 1156 0 . . . 285634 bcgsc.ca 37 5 39720610 39720610 + RNA SNP A G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ACATTGACACAGT . 57 11 43 0 . . GPR98 84059 bcgsc.ca 37 5 89948370 89948370 + Silent SNP A G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc GPR98,NS,carcinoma,+2,1 GPR98 NM_032119 exon19 c.A3624G p.V1208V ACTTGTAAACATT . 38 13 42 0 . 605 . 0 bcgsc.ca 37 5 143902542 143902542 + RNA SNP A C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TCAGCAAGCTGAG . 32 23 37 0 . . . 0 bcgsc.ca 37 6 3978522 3978522 + RNA SNP C T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGTTCCCACTTTT . 26 14 35 0 . . . 0 bcgsc.ca 37 6 27704914 27704914 + RNA SNP C T T rs371851152 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GGACTTCGGTAAT . 71 44 89 0 . . . 0 bcgsc.ca 37 6 130068934 130068934 + RNA SNP A C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGGCAAAAACCGC . 4 4 17 0 . . . 0 bcgsc.ca 37 6 135219170 135219170 + RNA SNP G A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ATATACGTACTGT . 42 4 45 0 . . . 0 bcgsc.ca 37 6 139982567 139982567 + RNA SNP G T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ATTAAAGGAAATA . 10 3 18 0 . . . 0 bcgsc.ca 37 7 55005715 55005715 + RNA SNP T G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTTCTTTTACAAT . 63 6 81 0 . . . 100462826 bcgsc.ca 37 7 88078165 88078165 + RNA SNP C A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GAAAATCTCTATG . 13 6 18 0 . . . 55340 bcgsc.ca 37 7 150447077 150447077 + RNA SNP T C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCAAACTGGAGAT . 71 40 113 0 . . . 0 bcgsc.ca 37 7 155664620 155664620 + RNA SNP T G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTGCGGTTTTTGC . 30 13 40 0 . . . 389655 bcgsc.ca 37 8 49297445 49297445 + RNA SNP G T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TACGTTGCCCACT . 37 4 44 0 . . TTC39B 158219 bcgsc.ca 37 9 15307282 15307282 + Missense_Mutation SNP T G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . TTC39B NM_001168340 exon1 c.A40C p.N14H CTCGATTTCCCCG . 14 8 20 0 . 83 . 0 bcgsc.ca 37 9 32764313 32764313 + RNA SNP A C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTGCAAAAGTAAT . 59 26 86 0 . . . 347265 bcgsc.ca 37 9 102068170 102068170 + Silent SNP T C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CATGTCTATGGTG . 13 4 21 0 . . GAPVD1 26130 bcgsc.ca 37 9 128094335 128094335 + Silent SNP G T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . GAPVD1 NM_015635 exon12 c.G2304T p.V768V TGTTGTGTCCGGT . 55 4 63 0 . 124 . 0 bcgsc.ca 37 10 21683402 21683402 + RNA SNP C A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTTAGCCGTCTAG . 20 8 39 0 . . LINC00842 0 bcgsc.ca 37 10 47151591 47151591 + Silent SNP A T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTCACGAGGGGGG . 98 19 152 0 . . . 0 bcgsc.ca 37 10 80510412 80510412 + RNA SNP T G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ATTACTTTTAATG . 42 19 58 0 . . MMRN2 79812 bcgsc.ca 37 10 88703690 88703690 + Missense_Mutation SNP G A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . MMRN2 NM_024756 exon6 c.C851T p.A284V AAGTCAGCCCTGG . 10 3 21 0 . 49 SORBS1 0 bcgsc.ca 37 10 97116445 97116445 + Missense_Mutation SNP T C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . SORBS1 . . . . CCAGCCTTTCTTG . 14 4 26 0 . 185 . 8596 bcgsc.ca 37 11 49920193 49920193 + RNA SNP T C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TTCCAATAATGGG . 14 5 26 0 . . LOC100133315 0 bcgsc.ca 37 11 71614820 71614820 + RNA SNP C A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCTTCACCAGGAA . 20 4 29 0 . . . 0 bcgsc.ca 37 12 48953837 48953837 + RNA SNP C T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GCACCCCTATGTA . 20 5 36 0 . . APAF1 317 bcgsc.ca 37 12 99080607 99080607 + Missense_Mutation SNP G T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . APAF1 NM_181868 exon16 c.G2260T p.D754Y TCACCAGATGATA . 45 4 61 0 . 111 DNAH10 642797 bcgsc.ca 37 12 124418997 124418997 + Missense_Mutation SNP A T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . DNAH10 . . . . CCACAGAGGGAAG . 37 10 51 0 . 888 ZNF839 55778 bcgsc.ca 37 14 102800980 102800980 + Translation_Start_Site SNP G T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . ZNF839 NM_018335 exon4 c.G1506T p.M502I TCTGATGAAGGTG . 56 4 80 0 . 41 . 0 bcgsc.ca 37 15 78280865 78280865 + RNA SNP G T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . ACACGGGACCTCT . 30 12 59 0 . . CRAMP1L 0 bcgsc.ca 37 16 1675956 1675956 + Splice_Site SNP C T T novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CRAMP1L . . . . ACTGTACGGTGCT . 18 3 20 0 . 60 PAPD5 64282 bcgsc.ca 37 16 50248133 50248133 + Missense_Mutation SNP T A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . PAPD5 NM_001040284 exon4 c.T719A p.V240D TTCAGGTCCAGAT . 55 4 60 0 . 57 . 0 bcgsc.ca 37 16 52289409 52289409 + RNA SNP T G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CGGTTTTTGCCAT . 139 73 135 0 . . . 0 bcgsc.ca 37 16 52289431 52289431 + RNA SNP A C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGGCAAAAACCGC . 102 28 88 0 . . . 0 bcgsc.ca 37 16 52289444 52289444 + RNA SNP T G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AATTACTTTTGCA . 97 52 123 0 . . CTC1 80169 bcgsc.ca 37 17 8140835 8140835 + Missense_Mutation SNP T A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CTC1 NM_025099 exon5 c.A650T p.N217I AGCTTGTTTCTAA . 17 7 39 0 . 75 CEACAM1 634 bcgsc.ca 37 19 43031434 43031434 + Missense_Mutation SNP T A A rs140316654 TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . CEACAM1 NM_001184816 exon2 c.A183T p.Q61H AAAAAGTTGCTGG . 85 5 121 2 . 43 MLLT10P1 140678 bcgsc.ca 37 20 29637850 29637850 + RNA SNP T C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGGATTTCTTTCA . 68 8 151 4 . . . 170529 bcgsc.ca 37 20 49748142 49748142 + RNA SNP T C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GGTTCCTGCTGCA . 19 9 20 0 . . . 3529 bcgsc.ca 37 22 17402464 17402464 + RNA SNP C G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . CCGGTTCAAAACC . 45 25 55 0 . . . 728441 bcgsc.ca 37 22 21563355 21563355 + Silent SNP A C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AGCTGAAGTCGTC . 135 42 220 0 . . . 0 bcgsc.ca 37 X 9147497 9147497 + RNA SNP A G G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TGAGATAATCACC . 14 14 19 0 . . . 0 bcgsc.ca 37 X 25224509 25224509 + RNA SNP A C C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . AAAAGTAATTGCG . 85 40 147 0 . . . 0 bcgsc.ca 37 X 52613599 52613599 + RNA SNP G A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . GTGCCAGAGCCTT . 5 5 13 0 . . COL4A5 1287 bcgsc.ca 37 X 107909789 107909789 + Missense_Mutation SNP G A A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . COL4A5 NM_000495 exon39 c.G3518A p.G1173D AAGATGGTATTCC . 25 4 55 0 . 262 MPDZ 8777 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 9 13190162 13190162 + Missense_Mutation SNP T T C rs4740548 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003829 exon16 c.A2105G p.E702G TCCAGCTCTATGT . 31 20 50 0 . . PHF15 23338 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 5 133887780 133887780 + Silent SNP G G T rs12163993 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_015288 exon4 c.G192T p.P64P GATCCCGGACTCA . 39 11 40 0 . . ANKRD30BP2 149992 hgsc.bcm.edu;bcgsc.ca 37 21 14469494 14469495 + RNA DNP GC GC TT novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GC GC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . . . . TAAAAGCTTTGCC . 70 45 191 1 . . PCF11 51585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 82877706 82877707 + Missense_Mutation DNP AA AA CC novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 AA AA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc PCF11_ENST00000298281,NS,carcinoma,0,2 PCF11_ENST00000298281 NM_015885 exon5 c.A1768C p.QS589HR TGGCAAAGTTCCA . 94 37 130 0 . 0 CREM 1390 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 35500212 35500213 + Nonsense_Mutation DNP GA GA CT novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GA GA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_183011 exon7 c.A787T p.KK311N* AAGAAGAAAGAAT . 38 11 84 0 . . SDR16C5 195814 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 57228891 57228892 + Nonsense_Mutation DNP GC GC AA novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GC GC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_138969 exon2 c.G15T p.Q6* TGATTGCAGGTTG . 15 7 27 0 . . MGAT5B 146664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 74936851 74936852 + Missense_Mutation DNP GC GC TT novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GC GC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_198955 exon13 c.C1797T p.G599V CATCGGCAAGCCC . 23 4 33 0 . . EIF3H 8667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 117767993 117767994 + Missense_Mutation DNP GA GA TT novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GA GA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_003756 exon1 c.T43A p.S29N AGCTGGAAGAGGT . 32 11 52 0 . . ELN 2006 hgsc.bcm.edu 37 7 73474781 73474782 + Missense_Mutation DNP CT CT TC novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 CT CT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_001081754 exon25 c.T1713C p.A601V TGGTGCTGGTGTT . 16 4 31 0 . . DICER1 23405 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 95569702 95569703 + Missense_Mutation DNP GA GA AT novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GA GA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . NM_030621 exon22 c.T4030A p.S1344I TATATGAAAGGCG . 27 13 35 0 . . KRT85 3891 bcgsc.ca 37 12 52757179 52757180 + Missense_Mutation DNP GG GG TT novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 GG GG - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc KRT85,NS,carcinoma,-2,1 KRT85 NM_002283 exon5 c.C801A p.Q268K GGCTTGGAGAACG . 20 12 35 1 . 78 C11orf31 280636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 57509283 57509283 + Missense_Mutation SNP C C G novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . p.T42S . . CTAGCACTAGCTG . 45 6 79 0 . . GPX2 2877 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 65406264 65406264 + Missense_Mutation SNP G G C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . p.T172S . . GGGAAGGTGCGGC . 31 15 42 0 . . ZNF274 10782 hgsc.bcm.edu 37 19 58718365 58718365 + Missense_Mutation SNP T T C novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc ZNF274,NS,carcinoma,0,1 ZNF274 . p.L178P . . GAGCCCTGGACCA . 53 4 103 1 . 0 SELT 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 150340940 150340940 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . p.W120* . . GGCAGTGGGGCCA . 93 53 101 0 . . DNAH11 8701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 21630880 21630880 + Silent SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . p.L784L . . CCCTCTGATTGAA . 31 16 71 0 . . COPG2 26958 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 130147634 130147634 + Missense_Mutation SNP G G A novel TCGA-W5-AA39-01A-11D-A417-09 TCGA-W5-AA39-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ad952427-a9f6-4d9e-9f93-1145909c4a7a 6aa737b3-0e89-415b-b64f-2a66b3a847fc . . . p.H44Y . . GAATATGGTCAGA . 16 6 29 0 . .