Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27101387	27101394	+	Frame_Shift_Del	DEL	CCCTCTGC	CCCTCTGC	-	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	CCCTCTGC	CCCTCTGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_006015	exon18	c.4668_4675del	p.1556_1559del	TATGGTCCCTCTG	.	67	12	79	0	.	.
EP400	57634	hgsc.bcm.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAGCAGCAGCAG	rs376034029		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	EP400,NS,carcinoma,0,15	EP400	NM_015409	exon47	c.8181_8182insCAGCAGCAGCAG	p.Q2727delinsQQQQQ	GCAACAACAGCAG	.	41	0	41	0	.	0
TXK	7294	hgsc.bcm.edu;broad.mit.edu	37	4	48096207	48096207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_003328	exon8	c.C596T	p.A199V	TTTATGGCAGCCT	.	62	4	53	0	.	.
CCDC154	645811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1488640	1488640	+	Silent	SNP	T	T	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001143980	exon9	c.A1005G	p.L335L	GGCCAGTAGGACA	.	30	9	30	0	.	.
FCGBP	8857	hgsc.bcm.edu	37	19	40419710	40419710	+	Missense_Mutation	SNP	C	C	T	rs149288039	bycluster	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	FCGBP,NS,carcinoma,0,1	FCGBP	NM_003890	exon6	c.G3284A	p.R1095H	AGGCAGCGGTCAT	.	39	2	50	0	0.000	0
CDC25C	995	hgsc.bcm.edu	37	5	137621497	137621497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	CDC25C,NS,carcinoma,0,1	CDC25C	NM_001790	exon14	c.C1306A	p.H436N	GATGATGCATAGG	.	42	2	76	0	.	0
CELA2B	51032	hgsc.bcm.edu	37	1	15802636	15802636	+	Silent	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	CELA2B,NS,carcinoma,0,1	CELA2B	NM_015849	exon1	c.C16T	p.L6L	ACCCTGCTGCTGT	.	39	2	69	0	.	0
TYRO3	7301	hgsc.bcm.edu	37	15	41862869	41862869	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	TYRO3_ENST00000263798,lower_third,carcinoma,0,2	TYRO3_ENST00000263798	NM_006293	exon12	c.G1551C	p.Q517H	GCAGCAGTTCACC	.	48	2	56	0	.	0
FIG4	9896	hgsc.bcm.edu	37	6	110059612	110059612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	FIG4,NS,carcinoma,0,2	FIG4	NM_014845	exon7	c.G731A	p.R244H	TGCATCGTGACTG	.	91	4	101	0	.	0
NSUN4	387338	hgsc.bcm.edu	37	1	46810541	46810541	+	Silent	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_199044	exon2	c.G162A	p.V54V	CAGTGTGCAGTTT	.	67	4	61	0	.	.
YY1AP1	55249	hgsc.bcm.edu	37	1	155629657	155629657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001198903	exon10	c.C2458A	p.P820T	CTGGTGGAGGCCC	.	72	4	63	0	.	.
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu	37	7	138768749	138768749	+	Silent	SNP	C	C	T	rs368718217		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ZC3HAV1,colon,carcinoma,0,1	ZC3HAV1	NM_024625	exon3	c.G474A	p.R158R	CTGCTGCCGACCC	.	47	3	67	0	.	0
TTC26	79989	hgsc.bcm.edu;bcgsc.ca	37	7	138819535	138819535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001144920	exon2	c.G138T	p.L46F	CCTGTTGGAGGTA	.	58	4	91	0	.	.
AGTR2	186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	115304157	115304157	+	Silent	SNP	A	A	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_000686	exon3	c.A624T	p.S208S	ATGGTCAGCTGGG	.	47	5	70	0	.	.
NID2	22795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	52520801	52520801	+	Silent	SNP	A	A	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_007361	exon4	c.T1006C	p.L336L	CATTCAATGCCTC	.	61	5	94	0	.	.
CSH2	1443	hgsc.bcm.edu	37	17	61949936	61949936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_022644	exon4	c.G457A	p.V153M	CCCTCACCCCCAT	.	78	2	123	0	.	.
GLRA2	2742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	14708892	14708892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001118885	exon9	c.G991C	p.A331P	TTTGCTGCCTTAC	.	45	8	59	0	.	.
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110476496	110476496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_177531	exon49	c.C7435T	p.H2479Y	CATTGGCACCTGC	.	75	24	82	0	.	.
ALPK2	115701	hgsc.bcm.edu;bcgsc.ca	37	18	56202476	56202476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_052947	exon5	c.C4943A	p.S1648Y	GCTGAGGAGCTAG	.	75	4	91	0	.	.
EGFR	1956	hgsc.bcm.edu	37	7	55249155	55249155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	EGFR,colon,carcinoma,+1,1	EGFR	NM_005228	exon20	c.G2453T	p.C818F	ACTGGTGTGTGCA	.	52	3	68	0	.	+1
STK36	27148	hgsc.bcm.edu	37	2	219563551	219563551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	STK36,NS,carcinoma,0,1	STK36	NM_015690	exon26	c.G3284T	p.S1095I	CTCCCAGCCACTT	.	38	2	45	0	.	0
IREB2	3658	hgsc.bcm.edu;bcgsc.ca	37	15	78732192	78732192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_004136	exon2	c.C75A	p.F25L	GAAGTTCTTCGAT	.	91	4	94	0	.	.
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121758570	121758570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_005460	exon4	c.C138A	p.S46R	TTCTAGCTCTAGC	.	60	15	75	0	.	.
SATL1	340562	hgsc.bcm.edu	37	X	84362915	84362915	+	Nonsense_Mutation	SNP	G	G	A	rs374764586	alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001012980	exon1	c.C1060T	p.R354X	GGGCTCGTTGCGG	.	105	4	109	0	.	.
MYO1H	283446	hgsc.bcm.edu;bcgsc.ca	37	12	109877582	109877582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001101421	exon23	c.G2393T	p.G798V	CTCCTGGCATCTT	.	55	4	86	0	.	.
MAML3	55534	hgsc.bcm.edu	37	4	140811114	140811114	+	Silent	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	MAML3_ENST00000509479,colon,carcinoma,0,4	MAML3_ENST00000509479	NM_018717	exon2	c.G1476A	p.Q492Q	CTGCTGCTGCTGC	.	19	2	25	0	.	0
UMODL1	89766	hgsc.bcm.edu	37	21	43543114	43543114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	UMODL1,colon,carcinoma,0,1	UMODL1	NM_173568	exon16	c.G3385T	p.A1129S	GTTGTCGCCATCC	.	12	2	13	1	.	0
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120582444	120582444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_006836	exon41	c.A5351G	p.K1784R	CCTACTTTGAGGA	.	43	15	79	0	.	.
DZIP3	9666	hgsc.bcm.edu	37	3	108344792	108344792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_014648	exon7	c.G557T	p.G186V	GACGTGGTTTACT	.	95	4	142	0	.	.
UNC79	57578	hgsc.bcm.edu	37	14	94088062	94088062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	UNC79,colon,carcinoma,0,2	UNC79	NM_020818	exon30	c.C3952T	p.R1318C	AAGCTACGCTCTT	.	44	2	106	0	.	0
GLIS3	169792	hgsc.bcm.edu;broad.mit.edu	37	9	4286060	4286060	+	Silent	SNP	A	A	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001042413	exon2	c.T366C	p.P122P	AGGAAAAGGGCTT	.	65	4	85	0	.	.
INMT	11185	hgsc.bcm.edu;bcgsc.ca	37	7	30793366	30793366	+	Silent	SNP	G	G	A	rs199553396		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	INMT,NS,carcinoma,0,2	INMT	NM_006774	exon2	c.G174A	p.T58T	GGACACGCTGATT	.	60	5	85	0	0.001	0
ANPEP	290	hgsc.bcm.edu;bcgsc.ca	37	15	90336304	90336304	+	Silent	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001150	exon16	c.C2211A	p.T737T	GTTGTTGGTATTA	.	69	4	101	0	.	.
C14orf178	283579	hgsc.bcm.edu	37	14	78236011	78236011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	C14orf178,colon,carcinoma,-1,1	C14orf178	NM_174943	exon3	c.C359T	p.A120V	AGGATGCCATGGG	.	44	2	85	0	.	-1
KPNA3	3839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	50275983	50275983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_002267	exon17	c.A1519G	p.N507D	CAAAATTGTAGGT	.	43	13	83	0	.	.
ZNF33A	7581	hgsc.bcm.edu;bcgsc.ca	37	10	38343567	38343567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_006954	exon5	c.C515T	p.A172V	TTAATGCCTGTGG	.	92	4	102	0	.	.
BST2	684	hgsc.bcm.edu	37	19	17515240	17515240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_004335	exon2	c.C292A	p.L98I	CCATTAGGGCCAT	.	86	4	85	0	.	.
COL15A1	1306	hgsc.bcm.edu	37	9	101801014	101801014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	COL15A1,NS,carcinoma,0,2	COL15A1	NM_001855	exon22	c.C2474T	p.P825L	GGCCTCCGGTTGG	.	47	3	113	0	.	0
KIAA0232	9778	hgsc.bcm.edu	37	4	6863223	6863223	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	KIAA0232,NS,carcinoma,0,1	KIAA0232	NM_014743	exon7	c.G1114T	p.E372X	TTAAAAGAAATAG	.	49	2	50	0	.	0
TEAD2	8463	hgsc.bcm.edu	37	19	49862735	49862735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	TEAD2,NS,carcinoma,0,1	TEAD2	NM_001256658	exon3	c.G254A	p.R85H	ATGTAGCGGGCGA	.	49	3	88	0	.	0
SLAMF8	56833	hgsc.bcm.edu	37	1	159799757	159799757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	SLAMF8,NS,carcinoma,0,1	SLAMF8	NM_020125	exon2	c.G142T	p.A48S	CGTGAGGCTATCT	.	38	2	39	0	.	0
DTL	51514	hgsc.bcm.edu	37	1	212274368	212274368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	DTL,NS,carcinoma,0,1	DTL	NM_016448	exon14	c.G2036T	p.S679I	CACGAAGTCCGTC	.	68	3	83	0	.	0
OR4X1	390113	hgsc.bcm.edu	37	11	48285986	48285986	+	Missense_Mutation	SNP	T	T	A	rs76457745	bycluster	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	OR4X1,caecum,carcinoma,0,1	OR4X1	NM_001004726	exon1	c.T574A	p.F192I	ACCTTCTTCATTA	.	23	3	26	0	.	0
ZBTB4	57659	hgsc.bcm.edu;broad.mit.edu	37	17	7369566	7369566	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001128833	exon3	c.G555A	p.W185X	AGGTACCCAGGCA	.	30	7	42	0	.	.
CACNA2D4	93589	hgsc.bcm.edu	37	12	1987537	1987537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	CACNA2D4_ENST00000382722,rectum,carcinoma,0,2	CACNA2D4_ENST00000382722	NM_172364	exon16	c.G1663A	p.A555T	GAAAGGCGTATCC	.	65	4	84	0	.	0
MINK1	50488	hgsc.bcm.edu	37	17	4799740	4799740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	MINK1_ENST00000355280,NS,carcinoma,0,1	MINK1_ENST00000355280	NM_153827	exon30	c.C3632T	p.T1211M	AGATCACGCCCCA	.	33	2	51	0	.	0
LILRB5	10990	hgsc.bcm.edu	37	19	54760466	54760466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	LILRB5_ENST00000450632,colon,carcinoma,0,2	LILRB5_ENST00000450632	NM_001081442	exon3	c.G241A	p.A81T	ACTTGGCCTTGGC	.	67	2	62	0	.	0
TNIK	23043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	170928989	170928989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001161562	exon4	c.G222T	p.K74N	ATATTTCTTCAAC	.	119	27	122	0	.	.
SCN2A	6326	hgsc.bcm.edu	37	2	166231393	166231393	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	SCN2A_ENST00000375437,bladder,carcinoma,0,2	SCN2A_ENST00000375437	NM_001040143	exon21	c.G4171T	p.E1391X	CTCATTGAGAGCA	.	50	2	76	0	.	0
SLC4A11	83959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3214919	3214919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001174090	exon5	c.C462A	p.H154Q	GTCGCGGTGCGCA	.	17	7	20	0	.	.
MED13L	23389	hgsc.bcm.edu	37	12	116413011	116413011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	MED13L,right_upper_lobe,carcinoma,0,2	MED13L	NM_015335	exon25	c.G5696T	p.G1899V	AGTCGCCCGATTA	.	24	2	44	0	.	0
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	210742794	210742794	+	Silent	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_032504	exon24	c.G3963A	p.E1321E	TGAGGAGGAAGAC	.	27	5	52	0	.	.
DHDH	27294	hgsc.bcm.edu	37	19	49447641	49447641	+	Nonsense_Mutation	SNP	G	G	T	rs373524516		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_014475	exon6	c.G772T	p.E258X	CCGACCGAGCTGG	.	65	4	78	0	.	.
FRG1B	284802	hgsc.bcm.edu	37	20	29632486	29632486	+	RNA	SNP	C	C	A	rs74693630	alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	CCACTGCACCTGG	.	118	5	137	0	.	.
IFFO2	126917	hgsc.bcm.edu;bcgsc.ca	37	1	19237944	19237944	+	Silent	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001136265	exon7	c.C1251A	p.I417I	CTCATGGATCAAG	.	80	4	144	0	.	.
tRNA-Phe	0	hgsc.bcm.edu	37	MT	625	625	+	RNA	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	TTAGACGGGCTCA	.	631	137	548	0	.	.
LCP1	3936	hgsc.bcm.edu	37	13	46732997	46732997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	LCP1,NS,carcinoma,0,1	LCP1	NM_002298	exon3	c.C192A	p.D64E	ATCTTGGTCCAGA	.	34	2	63	0	.	0
SOX3	6658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	139586719	139586719	+	Silent	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_005634	exon1	c.C507T	p.I169I	CTTGCTGATCTCA	.	69	12	60	0	.	.
TUSC3	7991	hgsc.bcm.edu;bcgsc.ca	37	8	15531281	15531281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_178234	exon6	c.G734A	p.G245D	CTTCTGGCCAGAT	.	53	4	76	0	.	.
BCL7C	9274	hgsc.bcm.edu	37	16	30904573	30904573	+	Missense_Mutation	SNP	C	C	T	rs138503357		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	BCL7C_ENST00000380317,NS,carcinoma,0,2	BCL7C_ENST00000380317	NM_004765	exon2	c.G131A	p.R44H	AAGATACGAAGGG	.	22	3	15	0	0.000	0
AURKC	6795	hgsc.bcm.edu	37	19	57744038	57744038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	AURKC_ENST00000302804,NS,haematopoietic_neoplasm,+1,2	AURKC_ENST00000302804	NM_001015878	exon4	c.G425T	p.R142L	AACAGCGCACAGC	.	21	2	17	0	.	+1
ARID1A	8289	hgsc.bcm.edu	37	1	27100375	27100375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ARID1A,bladder,carcinoma,0,1	ARID1A	NM_006015	exon17	c.C4087A	p.Q1363K	ATGTATCAACAGC	.	29	2	39	0	.	0
MYOM3	127294	hgsc.bcm.edu	37	1	24384096	24384096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	MYOM3,NS,carcinoma,0,2	MYOM3	NM_152372	exon37	c.G4072A	p.V1358I	CTGAGACGATGCA	.	37	2	66	0	.	0
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38840868	38840868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001206927	exon51	c.G7424A	p.R2475K	TTTCTAGGATGGG	.	41	14	57	0	.	.
ANKFN1	162282	hgsc.bcm.edu	37	17	54431318	54431318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ANKFN1,colon,carcinoma,-1,1	ANKFN1	NM_153228	exon5	c.G521A	p.G174D	GCGAGGGCTTGAC	.	71	3	91	0	.	-1
WDFY3	23001	hgsc.bcm.edu	37	4	85678262	85678262	+	Silent	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_014991	exon33	c.C5241T	p.N1747N	ATCTCGGTTAATC	.	71	3	94	0	.	.
NIPAL1	152519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48037901	48037901	+	Silent	SNP	A	A	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_207330	exon6	c.A945T	p.T315T	CTTCACATCCATG	.	48	13	79	0	.	.
TCHH	7062	hgsc.bcm.edu	37	1	152084531	152084531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_007113	exon3	c.C1162G	p.Q388E	TCAGCTGCTGCTC	.	32	6	30	0	.	.
MYT1L	23040	hgsc.bcm.edu	37	2	1890332	1890332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_015025	exon18	c.C2684A	p.A895D	CTGGTGGCCAGCA	.	57	4	80	0	.	.
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	34205526	34205526	+	Missense_Mutation	SNP	G	G	T	rs368210942	alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_025135	exon10	c.G1010T	p.G337V	CCAGTGGGTGCCG	.	58	16	68	0	.	.
KIRREL2	84063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36352740	36352740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_199180	exon11	c.G1324T	p.G442W	GAGGCGGGGTCGC	.	54	17	35	0	.	.
CHD5	26038	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	6194805	6194805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_015557	exon19	c.C2985A	p.H995Q	GTAGGGGTGGTTG	.	40	5	72	0	.	.
KIAA1324	57535	hgsc.bcm.edu	37	1	109714602	109714602	+	Silent	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_020775	exon4	c.C582T	p.Y194Y	ATACTACTATCCA	.	58	4	63	0	.	.
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	119345170	119345170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_024581	exon2	c.G968A	p.C323Y	TTTTGGCATTTGT	.	62	5	88	0	.	.
GTPBP5	26164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60768516	60768516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_015666	exon2	c.G40A	p.V14M	AGGACCGTGTTTC	.	50	10	46	0	.	.
GALNT11	63917	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	151800310	151800310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_022087	exon4	c.C533T	p.T178M	ACCGCACGCCAGC	.	38	4	60	0	.	.
IGF1R	3480	hgsc.bcm.edu	37	15	99482568	99482568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	IGF1R,NS,lymphoid_neoplasm,0,1	IGF1R	NM_000875	exon18	c.G3436T	p.D1146Y	GCCGAAGATTTCA	.	43	2	57	0	.	0
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	36192384	36192384	+	Silent	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_194301	exon15	c.G1953A	p.S651S	GGTCAGCGATGAC	.	123	7	169	0	.	.
CA3	761	hgsc.bcm.edu	37	8	86351153	86351153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_005181	exon1	c.G15T	p.W5C	GGAGTGGGGCTAC	.	104	5	136	0	.	.
SIT1	27240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	35650620	35650620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_014450	exon2	c.A115G	p.T39A	CCTGGGTTATGGA	.	22	8	26	0	.	.
CP	1356	hgsc.bcm.edu;bcgsc.ca	37	3	148896305	148896305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_000096	exon16	c.G2775T	p.E925D	TTCATTCTCATCA	.	82	4	77	0	.	.
FTSJD2	23070	hgsc.bcm.edu;bcgsc.ca	37	6	37421057	37421057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_015050	exon8	c.G746A	p.R249H	TTGATCGCATGTT	.	52	4	63	0	.	.
FANCC	2176	hgsc.bcm.edu	37	9	98011555	98011555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	FANCC_ENST00000289081,NS,carcinoma,0,1	FANCC_ENST00000289081	NM_001243743	exon2	c.G19A	p.D7N	AAAGATCTACTGA	.	34	2	33	0	.	0
GTPBP4	23560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	1052974	1052974	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_012341	exon10	c.T1019G	p.L340W	GGCTTTTGGCTCA	.	77	13	106	0	.	.
DAZL	1618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	16633636	16633636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001190811	exon10	c.T815C	p.I272T	GTTTGTATGCTTC	.	360	16	601	0	.	.
ZDHHC4	55146	hgsc.bcm.edu	37	7	6621822	6621822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ZDHHC4,caecum,carcinoma,-1,2	ZDHHC4	NM_018106	exon5	c.C310T	p.P104S	CTTCTGCCCTATC	.	48	2	97	0	.	-1
FBXL13	222235	hgsc.bcm.edu	37	7	102518847	102518847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001111038	exon15	c.G1439T	p.R480M	CTTATCCTCATGC	.	71	4	73	0	.	.
TMPRSS6	164656	hgsc.bcm.edu	37	22	37494529	37494529	+	Missense_Mutation	SNP	C	C	T	rs371788844		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	TMPRSS6,NS,carcinoma,0,1	TMPRSS6	NM_153609	exon3	c.G290A	p.R97H	AAGTGGCGATTGA	.	53	3	85	0	.	0
MAP4K4	9448	hgsc.bcm.edu;bcgsc.ca	37	2	102480371	102480371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_001242560	exon16	c.C1700T	p.A567V	AATTTGCACACCA	.	57	4	64	0	.	.
PROS1	5627	hgsc.bcm.edu	37	3	93605209	93605209	+	Silent	SNP	G	G	T	rs370129669	alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	PROS1,bladder,carcinoma,0,1	PROS1	NM_000313	exon11	c.C1294A	p.R432R	CTTTCCGAGGGAA	.	73	3	119	0	.	0
C16orf71	146562	hgsc.bcm.edu;broad.mit.edu	37	16	4796983	4796983	+	Silent	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_139170	exon8	c.C1237T	p.L413L	GCAGCTCTGGGAG	.	47	4	74	0	.	.
PRSS12	8492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119259352	119259352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_003619	exon2	c.T620C	p.I207T	TGACAAATGACTG	.	21	8	33	0	.	.
ITGA8	8516	hgsc.bcm.edu	37	10	15649776	15649776	+	Missense_Mutation	SNP	C	C	T	rs140395954		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ITGA8,rectum,carcinoma,0,1	ITGA8	NM_003638	exon17	c.G1664A	p.R555Q	AGCGTCCGTTTAA	.	39	2	43	0	0.000	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu	37	19	9090831	9090831	+	Silent	SNP	A	A	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	MUC16_ENST00000397910,bladder,carcinoma,0,2	MUC16_ENST00000397910	NM_024690	exon1	c.T984C	p.P328P	GGAAAAAGGGATA	.	27	3	30	0	.	0
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	15468838	15468838	+	Silent	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	PSIP1_ENST00000380733,NS,carcinoma,+1,2	PSIP1_ENST00000380733	NM_001128217	exon14	c.C1210A	p.R404R	ATCGCCGTATCTG	.	21	7	36	0	.	+1
QSER1	79832	hgsc.bcm.edu	37	11	32956871	32956871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	QSER1,bladder,carcinoma,0,1	QSER1	NM_001076786	exon4	c.C3680T	p.S1227F	ATTTATCTTCATT	.	46	2	93	0	.	0
SLC25A46	91137	hgsc.bcm.edu	37	5	110096916	110096916	+	Silent	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	SLC25A46,colon,carcinoma,0,3	SLC25A46	NM_138773	exon8	c.C691A	p.R231R	ATAATTCGAGATA	.	42	2	63	0	.	0
ATP6V0D2	245972	hgsc.bcm.edu	37	8	87162459	87162459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ATP6V0D2,NS,carcinoma,0,1	ATP6V0D2	NM_152565	exon6	c.G758T	p.R253L	GGTTGCGGCTGTT	.	50	2	86	0	.	0
EMR4P	326342	hgsc.bcm.edu	37	19	6957050	6957050	+	RNA	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	ATTAGCCTTACCT	.	91	4	116	0	.	.
AMY2A	279	hgsc.bcm.edu;broad.mit.edu	37	1	104160125	104160125	+	Silent	SNP	A	A	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_000699	exon1	c.A63T	p.T21T	AAATACACAACAA	.	252	12	325	0	.	.
SEMA6D	80031	hgsc.bcm.edu	37	15	48055275	48055275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	SEMA6D,rectum,carcinoma,0,1	SEMA6D	NM_153617	exon9	c.G721A	p.A241T	GAAATCGCTGTCG	.	41	2	52	0	.	0
ZKSCAN4	387032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	28213220	28213220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_019110	exon5	c.G1312A	p.G438S	CTTTGCCACACAT	.	64	14	68	0	.	.
ATP10B	23120	hgsc.bcm.edu	37	5	160047807	160047807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	ATP10B,NS,carcinoma,0,1	ATP10B	NM_025153	exon15	c.G1963A	p.V655M	TGGCCACGTTGGC	.	26	2	36	0	.	0
TBP	6908	hgsc.bcm.edu	37	6	170871016	170871016	+	Silent	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	TBP,NS,carcinoma,0,2	TBP	NM_003194	exon3	c.G192A	p.Q64Q	ACAACAGCAGCAG	.	36	3	34	0	.	0
ATP13A2	23400	broad.mit.edu	37	1	17316709	17316709	+	Silent	SNP	G	G	A	rs148374514		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	ATP13A2	NM_022089	exon21	c.C2325T	p.I775I	GTGGACGATGATC	.	34	3	60	0	G|1.000;A|0.000	85
FAM5C	0	broad.mit.edu	37	1	190203603	190203603	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	FAM5C	NM_199051	exon5	c.C623G	p.T208R	GTTTCTGTTACCT	.	94	3	94	0	.	343
RNPC3	55599	broad.mit.edu	37	1	104084013	104084013	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	RNPC3	NM_017619	exon8	c.G809C	p.R270T	CCAAAAGACCTAA	.	103	3	133	0	.	20
ANKRD20A12P	0	broad.mit.edu	37	1	142713765	142713765	+	RNA	SNP	T	T	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	ATTTTCTTTTTCC	.	281	7	257	0	.	.
STK40	83931	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36819995	36819995	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	STK40	NM_032017	exon7	c.T593G	p.L198R	AGCTTCAGGTCTC	.	63	16	75	1	.	53
CCDC147	159686	broad.mit.edu	37	10	106118238	106118238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	CCDC147	NM_001008723	exon2	c.T149C	p.M50T	CTGTCATGAAAAA	.	42	3	41	0	.	137
ATM	472	broad.mit.edu	37	11	108151894	108151894	+	Splice_Site	SNP	A	A	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	ATM	NM_000051	exon24	c.A3575G	p.K1192R	TGAAAAAGGTATA	.	98	4	134	0	.	1657
LRP6	4040	broad.mit.edu	37	12	12300324	12300324	+	Silent	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	LRP6	NM_002336	exon15	c.C3373A	p.R1125R	CAATTCGCCGGAG	.	91	3	111	0	.	170
HDC	3067	broad.mit.edu	37	15	50550626	50550626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	HDC	NM_002112	exon3	c.C293T	p.A98V	TTGATGGCATCAG	.	49	3	56	0	.	86
PMFBP1	83449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72174346	72174346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	PMFBP1	NM_031293	exon6	c.G772A	p.E258K	GAAGTTCTTGAAT	.	83	17	93	0	.	101
THAP11	57215	broad.mit.edu	37	16	67876820	67876820	+	Silent	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	THAP11	NM_020457	exon1	c.G363A	p.Q121Q	GCAGCAGCAACAG	.	30	3	25	0	.	27
C19orf26	255057	broad.mit.edu	37	19	1234721	1234721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	C19orf26	NM_152769	exon6	c.A476G	p.D159G	TGGAAGTCCCCCT	.	74	4	80	1	.	31
.	100129543	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	23328817	23328817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	AGTGGTCCTCAAC	.	87	21	98	0	.	.
WFDC11	259239	broad.mit.edu	37	20	44279175	44279175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	WFDC11	NM_147197	exon3	c.C65A	p.S22Y	AGCACAGACAGTA	.	37	3	69	0	.	11
LIF	0	broad.mit.edu	37	22	30642384	30642386	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	LIF	.	.	.	.	CGGAGCGAGGAGG	.	6	1	6	0	.	18
SDHAP2	0	broad.mit.edu	37	3	195392705	195392705	+	RNA	DEL	C	C	-	rs59802848	bycluster	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	GTGTCACCAACAT	.	13	2	20	2	.	.
PDCD6IP	10015	broad.mit.edu	37	3	33840300	33840300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	PDCD6IP	NM_013374	exon1	c.A80G	p.Q27R	TCCAGCAGACTTA	.	73	4	60	0	.	62
TIGIT	201633	broad.mit.edu;bcgsc.ca	37	3	114014670	114014670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	TIGIT	NM_173799	exon2	c.C340T	p.P114S	ACCTACCCTGATG	.	11	3	25	0	.	42
TCERG1	10915	broad.mit.edu	37	5	145859643	145859643	+	Silent	SNP	A	A	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	TCERG1	NM_006706	exon12	c.A1872G	p.K624K	TGTTAAAGCAAAA	.	108	4	128	0	.	148
C2	717	broad.mit.edu	37	6	31903768	31903768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	C2	NM_000063	exon7	c.G918T	p.M306I	CCTCATGTCTGTC	.	63	3	106	0	.	50
TMEM120A	83862	broad.mit.edu	37	7	75618420	75618435	+	RNA	DEL	AGGGGGGTAGGGGGCT	AGGGGGGTAGGGGGCT	-	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	GGGGGGAGGGGGG	.	6	2	5	0	.	.
.	0	broad.mit.edu	37	9	66459820	66459820	+	RNA	SNP	G	G	C	rs371375365	bycluster	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	TCCCCAGTGCCTT	.	4	3	10	0	.	.
RNR2	0	broad.mit.edu	37	MT	2606	2606	+	RNA	SNP	T	T	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	AATCACTTGTTCC	.	3163	18	2640	1	.	.
PLXNB3	5365	broad.mit.edu	37	X	153040491	153040491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	PLXNB3	NM_001163257	exon25	c.G4157A	p.C1386Y	GCCACTGTGCCAC	.	17	3	17	0	.	208
SLC25A6	293	broad.mit.edu	37	X	1506182	1506182	+	Silent	SNP	C	C	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	SLC25A6	NM_001636	exon3	c.G729T	p.G243G	TTTGCGCCCGGAC	.	105	4	101	0	.	27
CYB5R2	51700	ucsc.edu	37	11	7686607	7686607	+	Nonstop_Mutation	SNP	A	A	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	CYB5R2	NM_016229	exon9	c.T829A	p.X277K	GGTGTTAGTAGGT	.	39	6	72	3	.	23
DNMT1	1786	ucsc.edu;bcgsc.ca	37	19	10250386	10250386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	DNMT1,colon,NS,0,1	DNMT1	NM_001130823	exon34	c.G3914A	p.R1305H	CCCATGCGGACCA	.	40	4	73	0	.	148
NSFL1C	55968	ucsc.edu;bcgsc.ca	37	20	1445015	1445015	+	Silent	SNP	C	C	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	NSFL1C,NS,carcinoma,-1,2	NSFL1C	NM_016143	exon2	c.G162A	p.S54S	TGCCTGCGAAATG	.	39	4	57	0	.	38
TTI1	9675	ucsc.edu;bcgsc.ca	37	20	36612006	36612006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	TTI1	NM_014657	exon9	c.C3122A	p.S1041Y	CAGGTGGAGTCTG	.	38	4	51	0	.	104
FGD4	121512	bcgsc.ca	37	12	32786595	32786599	+	Frame_Shift_Del	DEL	AAGAA	-	-	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	AAGAA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	FGD4	NM_139241	exon15	c.1874_1878del	p.625_626del	ACAGTGAAGAAAA	.	185	4	199	0	.	86
TRIM17	51127	bcgsc.ca	37	1	228602548	228602548	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	TRIM17	NM_001024940	exon2	c.C226T	p.P76S	GGTTGGGCAGCAG	.	89	5	93	0	.	66
FMN2	56776	bcgsc.ca	37	1	240371688	240371688	+	Silent	SNP	A	T	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	FMN2,NS,carcinoma,+1,1	FMN2	NM_020066	exon5	c.A3576T	p.G1192G	ACCTGGAGTGGGA	.	148	10	151	6	.	451
.	344371	bcgsc.ca	37	2	34064966	34064966	+	RNA	SNP	C	A	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	AGCAATCTTCCTC	.	13	4	26	0	.	.
.	0	bcgsc.ca	37	2	73597340	73597340	+	RNA	SNP	T	C	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	ATGCCATTGAAAA	.	26	9	25	0	.	.
RAD54L2	23132	bcgsc.ca	37	3	51697126	51697126	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	RAD54L2	NM_015106	exon22	c.G4094A	p.S1365N	CTGCCAGCAACCC	.	15	3	34	0	.	94
DSPP	1834	bcgsc.ca	37	4	88536880	88536880	+	Silent	SNP	C	T	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	DSPP	NM_014208	exon5	c.C3066T	p.S1022S	CAGCAGCAATAGC	.	60	7	58	1	.	174
DSPP	1834	bcgsc.ca	37	4	88537225	88537225	+	Missense_Mutation	SNP	C	A	A	rs201608130		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	DSPP	NM_014208	exon5	c.C3411A	p.D1137E	CAGTGACAGCAGC	.	48	7	33	0	.	174
B4GALT7	11285	bcgsc.ca	37	5	177035587	177035587	+	Silent	SNP	C	T	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	B4GALT7	NM_007255	exon4	c.C687T	p.D229D	GGACGACGAGTTC	.	140	6	117	0	.	21
.	89761	bcgsc.ca	37	6	66803759	66803759	+	RNA	SNP	A	G	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	TATCACAGAATGT	.	34	14	54	0	.	.
.	0	bcgsc.ca	37	7	81190144	81190144	+	RNA	SNP	G	T	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	GTAAATGTAACTT	.	56	4	70	0	.	.
PTPRN2	0	bcgsc.ca	37	7	157406760	157406760	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	PTPRN2	.	.	.	.	GCTCAACCGGCCA	.	33	4	38	0	.	243
.	441442	bcgsc.ca	37	9	68358153	68358153	+	RNA	SNP	G	A	A	rs1928587		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	GAAGGTGGCAGGT	.	98	19	150	8	.	.
OR5AN1	390195	bcgsc.ca	37	11	59132169	59132169	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	OR5AN1	NM_001004729	exon1	c.C238T	p.P80S	ACAGTCCCCAAGA	.	34	3	59	0	.	49
KDM5A	5927	bcgsc.ca	37	12	498247	498247	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	KDM5A	NM_001042603	exon1	c.T11G	p.V4G	GGCCCCACGCCCG	.	103	33	136	9	.	307
KDM5A	5927	bcgsc.ca	37	12	498253	498253	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	KDM5A	NM_001042603	exon1	c.C5G	p.A2G	ACGCCCGCCATTG	.	87	27	118	7	.	307
AICDA	57379	bcgsc.ca	37	12	8757981	8757981	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	AICDA	NM_020661	exon3	c.C257A	p.P86H	TAGCAGGGGCTCC	.	57	4	53	0	.	37
NEK3	4752	bcgsc.ca	37	13	52726745	52726745	+	Missense_Mutation	SNP	T	A	A	rs373174576	alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	NEK3	NM_002498	exon5	c.A392T	p.K131M	CTCACCTTGGACT	.	31	4	48	0	.	41
.	390411	bcgsc.ca	37	13	68406867	68406867	+	RNA	SNP	C	G	G	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	GTCCATCGAATCT	.	19	6	36	0	.	.
.	28685	bcgsc.ca	37	14	22266022	22266022	+	RNA	SNP	G	T	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	TGCAGTGGAGTGA	.	60	4	76	0	.	.
FOXN3	1112	bcgsc.ca	37	14	89629228	89629228	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	FOXN3	NM_001085471	exon7	c.C1003A	p.H335N	AGTTGTGATCCTC	.	34	5	42	0	.	78
LIPC	3990	bcgsc.ca	37	15	58834114	58834114	+	Missense_Mutation	SNP	G	A	A	rs372054789		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	LIPC	NM_000236	exon3	c.G404A	p.R135H	CCGTCCGCAACAC	.	54	4	68	0	.	56
.	100287647	bcgsc.ca	37	16	33941726	33941726	+	RNA	SNP	G	T	T	rs414350		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	TGAGATGCAGGCC	.	156	10	154	6	.	.
.	0	bcgsc.ca	37	16	34327734	34327734	+	RNA	SNP	T	A	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	GCAGCATCCCTTG	.	42	12	68	0	.	.
LPHN1	22859	bcgsc.ca	37	19	14266967	14266967	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	LPHN1	NM_001008701	exon18	c.G3095A	p.S1032N	GATGAGCTTCGGA	.	40	5	46	0	.	107
.	644739	bcgsc.ca	37	X	47663663	47663663	+	RNA	SNP	A	C	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	CCCTCCACCACCC	.	137	28	182	10	.	.
.	648283	bcgsc.ca	37	X	83004574	83004574	+	RNA	SNP	T	C	C	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	TGCTTCTTTAAAG	.	162	5	185	0	.	.
.	0	bcgsc.ca	37	X	101034086	101034086	+	RNA	SNP	G	A	A	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	.	.	.	ATCCTCGGGTTCG	.	83	20	103	1	.	.
FAT1	2195	hgsc.bcm.edu	37	4	187549428	187549428	+	Missense_Mutation	SNP	C	C	A	rs2304867	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	FAT1,colon,carcinoma,0,2	FAT1	NM_005245	exon9	c.G4690T	p.A1564S	AGGAAGCGGTGAA	.	16	2	29	0	.	0
SSPO	23145	hgsc.bcm.edu	37	7	149503923	149503924	+	Silent	DNP	TA	TA	GT	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	TA	TA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	NM_198455	exon60	c.A8748T	.	ATAGATAGAGTGT	.	62	4	71	0	.	.
THSD7B	80731	hgsc.bcm.edu;bcgsc.ca	37	2	137988805	137988805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-WD-A7RX-01A-12D-A417-09	TCGA-WD-A7RX-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f045142-24cb-478a-8b21-9adb37e13d6c	f5ded799-618b-42f4-a824-a8194a599dbd	.	.	.	p.G639C	.	.	GGGGAAGGTGAGT	.	88	4	114	0	.	.