Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
EPHA2	1969	hgsc.bcm.edu	37	1	16475262	16475263	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_004431	exon3	c.434_435insA	p.I145fs	GGCGCAATGGTGT	.	19	12	16	0	.	.
ARID1A	8289	hgsc.bcm.edu	37	1	27101427	27101428	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.,1	.	NM_006015	exon18	c.4709_4710insT	p.S1570fs	CTCCATCTAACTA	.	24	13	73	0	.	842
PCDHB6	56130	hgsc.bcm.edu	37	5	140530549	140530549	+	Silent	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PCDHB6,NS,carcinoma,0,1	PCDHB6	NM_018939	exon1	c.C711T	p.N237N	TGACAACGTCCCC	.	32	3	37	0	.	0
KCNIP2	30819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103587678	103587678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_014591	exon8	c.G715A	p.A239T	TTGGGGCCTCCTC	.	16	4	42	0	.	.
CPD	1362	hgsc.bcm.edu	37	17	28750570	28750570	+	Silent	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CPD,NS,carcinoma,0,1	CPD	NM_001304	exon6	c.G1704T	p.V568V	TGAAGTGGTTGGA	.	65	3	97	0	.	0
WDR12	55759	hgsc.bcm.edu	37	2	203748929	203748929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	WDR12,colon,carcinoma,0,1	WDR12	NM_018256	exon10	c.G980A	p.R327Q	TTAGTTCGGGGAT	.	33	2	54	0	.	0
ATP5G2	517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54063070	54063070	+	Missense_Mutation	SNP	C	C	T	rs13819	alternate_allele	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_005176	exon4	c.G344A	p.S115N	TGGAAGCTGCGGC	.	42	10	58	0	.	.
PTPRE	5791	hgsc.bcm.edu	37	10	129861358	129861358	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PTPRE,rectum,carcinoma,0,1	PTPRE	NM_006504	exon10	c.G637T	p.E213X	AAACAGGAAACGG	.	41	2	55	0	.	0
PDDC1	347862	hgsc.bcm.edu	37	11	775135	775135	+	Silent	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PDDC1,NS,carcinoma,0,1	PDDC1	NM_182612	exon2	c.G72T	p.S24S	CTGGGCCGACACA	.	47	2	115	0	.	0
FN1	2335	hgsc.bcm.edu	37	2	216243985	216243985	+	Silent	SNP	G	G	A	rs376598003		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	FN1,colon,carcinoma,0,1	FN1	NM_212482	exon34	c.C5490T	p.S1830S	CTGGGCGCTCAGG	.	41	2	46	0	.	0
CHD1L	9557	hgsc.bcm.edu	37	1	146751820	146751820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CHD1L,caecum,carcinoma,0,1	CHD1L	NM_004284	exon15	c.C1661T	p.A554V	CTGATGCCTTGCC	.	45	2	68	0	.	0
SLC6A6	6533	hgsc.bcm.edu	37	3	14513785	14513785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.,1	.	NM_003043	exon10	c.T1169C	p.L390P	CCATTCTTTTTTT	.	32	2	82	1	.	58
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu	37	10	12126673	12126673	+	Missense_Mutation	SNP	C	C	T	rs141125831	alternate_allele	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	DHTKD1,colon,carcinoma,0,1	DHTKD1	NM_018706	exon3	c.C445T	p.R149W	GCCAAGCGGTTTG	.	55	3	78	0	.	0
PJA1	64219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	68382847	68382847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_145119	exon2	c.T235C	p.W79R	CGTCCCAACTACG	.	20	14	35	0	.	.
HERC3	8916	hgsc.bcm.edu	37	4	89591061	89591061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	HERC3,colon,carcinoma,0,1	HERC3	NM_014606	exon15	c.C1684A	p.L562I	GTAAACCTCTATA	.	58	3	107	0	.	0
CUBN	8029	hgsc.bcm.edu;bcgsc.ca	37	10	17113484	17113484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CUBN,caecum,carcinoma,0,1	CUBN	NM_001081	exon19	c.C2566A	p.L856I	AGTTGAGGAGAAT	.	82	4	102	1	.	0
KCNJ4	3761	hgsc.bcm.edu	37	22	38824085	38824085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	KCNJ4,NS,carcinoma,0,1	KCNJ4	NM_004981	exon2	c.G53A	p.R18H	CGGTTGCGGCGCT	.	32	2	40	0	.	0
ITGB6	3694	hgsc.bcm.edu	37	2	161030579	161030579	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ITGB6,NS,carcinoma,0,2	ITGB6	NM_000888	exon5	c.G665T	p.R222I	TTGAATCTTTCAG	.	36	2	48	0	.	0
GPRIN3	285513	hgsc.bcm.edu	37	4	90169820	90169820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	GPRIN3,right_lower_lobe,carcinoma,0,1	GPRIN3	NM_198281	exon2	c.C1442A	p.T481K	TAACTTGTTTCAG	.	40	2	29	0	.	0
KLHL31	401265	hgsc.bcm.edu	37	6	53519100	53519100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	KLHL31,NS,carcinoma,0,1	KLHL31	NM_001003760	exon2	c.G971T	p.R324L	CCTGGGCGTCCCC	.	35	2	30	0	.	0
ZNF175	7728	hgsc.bcm.edu	37	19	52090212	52090212	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ZNF175,colon,carcinoma,0,1	ZNF175	NM_007147	exon5	c.G628T	p.E210X	AACCTAGAAGTGA	.	43	2	49	0	.	0
LRP2	4036	hgsc.bcm.edu	37	2	170062925	170062925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	LRP2,NS,carcinoma,0,1	LRP2	NM_004525	exon39	c.C7305A	p.F2435L	TTGTGTGAAGTAG	.	62	3	88	0	.	0
APOA4	337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	116691593	116691593	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_000482	exon3	c.T1181G	p.L394W	CTCTCCAAAGGGG	.	53	17	75	0	.	.
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	90650699	90650699	+	Silent	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_022054	exon2	c.C579T	p.S193S	GCCCTCCGTGTAC	.	20	7	27	0	.	.
KCNMA1	3778	hgsc.bcm.edu	37	10	78704653	78704653	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001161352	exon23	c.C2780A	p.S927X	TTGGCTGACAGGA	.	57	4	55	0	.	.
ZNF132	7691	hgsc.bcm.edu	37	19	58945596	58945596	+	Silent	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_003433	exon3	c.C1215T	p.C405C	TTGACTGCACTCA	.	32	4	40	0	.	.
RHPN2	85415	hgsc.bcm.edu	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	RHPN2,face,carcinoma,0,2	RHPN2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC	.	10	2	26	2	.	0
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56524868	56524868	+	Silent	SNP	A	A	G	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_015292	exon4	c.A612G	p.K204K	GAGAAAAGAGCAG	.	33	14	55	0	.	.
KRT8	3856	hgsc.bcm.edu	37	12	53294404	53294404	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	KRT8,NS,lymphoid_neoplasm,0,1	KRT8	NM_001256282	exon5	c.G742T	p.E248X	TGATCTCGTCGGT	.	16	3	31	0	.	0
EZR	7430	hgsc.bcm.edu	37	6	159197491	159197491	+	Silent	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	EZR,NS,carcinoma,0,1	EZR	NM_003379	exon7	c.C744A	p.I248I	GAAAGAGATGTTC	.	22	2	44	0	.	0
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	79576791	79576791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	DLG5,NS,carcinoma,0,1	DLG5	NM_004747	exon19	c.C3848T	p.P1283L	CTCCGCGGATATC	.	43	9	66	0	.	0
CYSLTR1	10800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	77529104	77529104	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_006639	exon3	c.T140C	p.V47A	ATGAGGACATAGA	.	18	14	42	0	.	.
ZNF165	7718	hgsc.bcm.edu	37	6	28053623	28053623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ZNF165,colon,carcinoma,0,1	ZNF165	NM_003447	exon2	c.C365A	p.T122N	CAGTGACCATACT	.	15	2	22	0	.	0
MDM2	4193	hgsc.bcm.edu	37	12	69229765	69229765	+	Splice_Site	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_002392	exon9	c.840+1G>T	.	GATGAGGTAGTAT	.	90	4	112	0	.	.
AGBL4	84871	hgsc.bcm.edu	37	1	49056576	49056576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	AGBL4,parotid,carcinoma,0,1	AGBL4	NM_032785	exon10	c.G1033A	p.D345N	CCTCATCCTCAAA	.	24	2	49	0	.	0
FLT3	2322	hgsc.bcm.edu	37	13	28610128	28610128	+	Silent	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	FLT3,NS,carcinoma,-1,1	FLT3	NM_004119	exon11	c.G1362T	p.S454S	TCCATCCGAGAAA	.	29	2	42	0	.	-1
AFF3	3899	hgsc.bcm.edu	37	2	100199456	100199456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	AFF3,colon,carcinoma,0,1	AFF3	NM_001025108	exon16	c.C2672A	p.A891E	GGTATTGCCACAC	.	28	2	23	1	.	0
ZNF500	26048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4802537	4802537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_021646	exon6	c.G1283A	p.R428H	GTCCGGCGGTGGG	.	32	10	31	0	.	.
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	10597943	10597943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_130385	exon21	c.C2675T	p.S892L	GCTGCCGAGCAAG	.	12	6	34	0	.	.
CPED1	79974	hgsc.bcm.edu	37	7	120765873	120765873	+	Splice_Site	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	C7orf58,NS,carcinoma,0,1	C7orf58	NM_024913	exon9	c.1062-1G>T	.	ATTTTAGATGCAG	.	21	2	47	0	.	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5209265	5209265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ADAMTS16_ENST00000274181,colon,carcinoma,0,2	ADAMTS16_ENST00000274181	NM_139056	exon10	c.C1511T	p.P504L	AGTATCCTGAGAA	.	38	2	49	0	.	0
CFHR3	10878	hgsc.bcm.edu	37	1	196759347	196759347	+	Silent	SNP	A	A	T	rs379049		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CFHR3,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	CFHR3	NM_021023	exon5	c.A786T	p.P262P	ACCACCAAGATGC	.	34	7	54	1	.	0
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	2698	2698	+	RNA	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	GAAGAGGCGGGCA	.	2868	247	823	0	.	.
HLA-B	3106	hgsc.bcm.edu	37	6	31322910	31322910	+	Missense_Mutation	SNP	G	G	A	rs74189305	bycluster	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	HLA-B,NS,carcinoma,-1,4	HLA-B	NM_005514	exon5	c.C986T	p.A329V	ATCACAGCAGCGA	.	45	8	51	2	.	-1
RNF103	7844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86831421	86831421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_005667	exon4	c.A1603G	p.T535A	TTTCAGTATCTTG	.	21	11	29	0	.	.
HIST1H3G	8355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	26271507	26271507	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_003534	exon1	c.G106T	p.V36L	TCTTCACGCCGCC	.	21	14	48	0	.	.
GUCY1A3	2982	hgsc.bcm.edu	37	4	156638432	156638432	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	GUCY1A3,colon,carcinoma,0,1	GUCY1A3	NM_001130687	exon8	c.C1694A	p.S565Y	TTATGTCTCCCCA	.	24	2	46	0	.	0
IBTK	25998	hgsc.bcm.edu;bcgsc.ca	37	6	82920614	82920614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_015525	exon16	c.C2426T	p.A809V	AGAGCTGCACAAC	.	49	4	66	0	.	.
TLR9	54106	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	52255290	52255290	+	Silent	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_017442	exon2	c.C3042T	p.T1014T	GTCCCTGGTCAGG	.	23	4	26	0	.	.
MEF2BNB-MEF2B	4207	hgsc.bcm.edu	37	19	19261516	19261516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	MEF2BNB-MEF2B,NS,carcinoma,0,4	MEF2BNB-MEF2B	NM_005919	exon4	c.G29A	p.R10H	AGGATGCGGGAGA	.	20	2	47	0	.	0
TMTC1	83857	hgsc.bcm.edu	37	12	29786213	29786213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	TMTC1,NS,carcinoma,-1,1	TMTC1	NM_001193451	exon6	c.T995C	p.V332A	AGGGTCACGGGTG	.	48	2	45	0	.	-1
RNU6-79	100873779	hgsc.bcm.edu	37	1	201754410	201754410	+	RNA	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	CTCTCTCTTTTTT	.	24	2	33	0	.	.
RNU5D-1	26830	hgsc.bcm.edu	37	5	80511667	80511667	+	RNA	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	TTTCATCACACTA	.	137	11	149	0	.	.
NFE2L3	9603	hgsc.bcm.edu;bcgsc.ca	37	7	26224962	26224962	+	Silent	SNP	T	T	C	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_004289	exon4	c.T1644C	p.P548P	TATCCCTTTTTCT	.	78	4	110	0	.	.
KIAA0391	9692	hgsc.bcm.edu	37	14	35593125	35593125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	KIAA0391,NS,carcinoma,0,1	KIAA0391	NM_014672	exon2	c.G674T	p.R225I	CAGACAGATGGAG	.	46	2	60	0	.	0
FAT4	79633	hgsc.bcm.edu	37	4	126373374	126373374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	FAT4_ENST00000394329,NS,carcinoma,0,2	FAT4_ENST00000394329	NM_024582	exon9	c.C11203T	p.R3735C	TTTTTACGCATTG	.	38	3	70	0	.	0
DDX56	54606	hgsc.bcm.edu	37	7	44611136	44611136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001257189	exon6	c.G845A	p.S282N	GGGATGCTGAACT	.	56	4	55	0	.	.
GLG1	2734	hgsc.bcm.edu	37	16	74566028	74566028	+	Silent	SNP	G	G	A	rs2550807	bycluster	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	GLG1,NS,carcinoma,0,1	GLG1	NM_001145667	exon2	c.C462T	p.D154D	ATTGCAGTCTGAA	.	52	6	60	0	.	0
MPPED1	758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	43870630	43870630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001044370	exon4	c.G421A	p.E141K	CCCTACGAGTACA	.	13	5	15	0	.	.
PHKA1	5255	hgsc.bcm.edu	37	X	71825199	71825199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_002637	exon25	c.G2737T	p.A913S	TTTCAGCAAAGAG	.	38	4	41	0	.	.
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50659359	50659359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_005448	exon2	c.G931T	p.A311S	ATCATTGCTCCCC	.	20	16	45	0	.	.
PDE4DIP	9659	hgsc.bcm.edu	37	1	144931041	144931041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PDE4DIP_ENST00000313431,colon,carcinoma,0,1	PDE4DIP_ENST00000313431	NM_001002811	exon1	c.G668A	p.S223N	TTTGTGCTTGCTA	.	20	2	34	0	.	0
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499	bycluster	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	IDH1,NS,haematopoietic_neoplasm,0,788	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	38	16	46	0	.	0
CSDE1	7812	hgsc.bcm.edu	37	1	115262239	115262239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CSDE1_ENST00000369530,NS,carcinoma,-1,2	CSDE1_ENST00000369530	NM_001242891	exon19	c.G2315A	p.R772H	CCAGTGCGCTGAT	.	33	2	48	0	.	-1
ADAM9	8754	hgsc.bcm.edu	37	8	38854669	38854669	+	Silent	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_003816	exon1	c.G87T	p.A29A	CGGTGCGGCGCGG	.	22	4	58	0	.	.
RXFP1	59350	hgsc.bcm.edu	37	4	159514595	159514595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	RXFP1,NS,carcinoma,0,1	RXFP1	NM_021634	exon3	c.C230T	p.A77V	ATTTTGCCAGTTA	.	47	3	109	0	.	0
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54664886	54664886	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001145303	exon12	c.C1816G	p.L606V	AAAGCAGGGGAAC	.	38	16	56	0	.	.
ZSCAN18	65982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58596277	58596277	+	Silent	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001145542	exon7	c.C1476T	p.G492G	CCGGCCGCCATGG	.	42	17	65	0	.	.
GNL3	26354	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	52727227	52727227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_014366	exon11	c.G1069T	p.G357C	GTCCCAGGCTACA	.	18	4	22	0	.	.
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	32576188	32576188	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_025209	exon7	c.T990A	p.D330E	GATAAGATCGGCT	.	34	12	68	0	.	.
PRLH	51052	hgsc.bcm.edu	37	2	238475690	238475690	+	Missense_Mutation	SNP	G	G	A	rs147108124	bycluster	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PRLH,NS,carcinoma,0,1	PRLH	NM_015893	exon2	c.G136A	p.G46R	AGTCGCGGGATCA	.	41	2	40	0	0.000	0
DENND3	22898	hgsc.bcm.edu;ucsc.edu	37	8	142160984	142160984	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_014957	exon6	c.G547T	p.E183X	GACCCCGAAAGCC	.	43	4	68	0	.	.
GBP4	115361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	89650997	89650997	+	Silent	SNP	A	A	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_052941	exon11	c.T1863A	p.T621T	AGGTAGAGTGACA	.	54	21	68	0	.	.
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55542175	55542175	+	Silent	SNP	T	T	C	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_006269	exon4	c.T5733C	p.Y1911Y	ACTGTATGCTCTT	.	27	10	41	0	.	.
CDKL5	6792	hgsc.bcm.edu;bcgsc.ca	37	X	18638035	18638035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_003159	exon16	c.G2325T	p.E775D	AAAAGAGAAGCAA	.	80	4	126	0	.	.
RNU6-76	100873777	hgsc.bcm.edu	37	16	33537355	33537355	+	RNA	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	AATGAGCACGTTC	.	96	8	122	0	.	.
SLC4A9	83697	hgsc.bcm.edu	37	5	139751848	139751848	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	SLC4A9_ENST00000506757,NS,carcinoma,0,2	SLC4A9_ENST00000506757	NM_001258428	exon20	c.C2764G	p.R922G	GGGGTCCGAAAGG	.	23	2	28	0	.	0
TAS2R20	259295	hgsc.bcm.edu	37	12	11150167	11150167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	TAS2R20,NS,carcinoma,0,1	TAS2R20	NM_176889	exon1	c.G308A	p.S103N	AATATGCTGAGGC	.	38	2	53	0	.	0
TMEM216	51259	hgsc.bcm.edu	37	11	61161386	61161386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001173990	exon3	c.T167C	p.L56P	CTAACCTAGTACT	.	51	4	71	0	.	.
BIRC6	57448	hgsc.bcm.edu	37	2	32725169	32725169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	BIRC6_ENST00000421745,colon,carcinoma,+2,1	BIRC6_ENST00000421745	NM_016252	exon46	c.G9024T	p.M3008I	GGCAATGATAATT	.	40	2	80	0	.	+2
SOCS4	122809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	55510680	55510680	+	Silent	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_080867	exon2	c.C921T	p.T307T	GGGTACCTTTTTA	.	52	23	68	0	.	.
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51766722	51766722	+	Silent	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001174116	exon28	c.G7032A	p.L2344L	ACATAGCAAAATG	.	47	15	59	0	.	.
SEMA3D	223117	hgsc.bcm.edu	37	7	84727276	84727276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	SEMA3D,right_lower_lobe,carcinoma,0,1	SEMA3D	NM_152754	exon2	c.C157A	p.L53M	AAAGCAGCAAGTC	.	26	2	48	0	.	0
FOXP1	27086	hgsc.bcm.edu	37	3	71179760	71179760	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001244815	exon1	c.C75A	p.Y25X	CGAGTGGTAAAAA	.	30	6	28	0	.	.
TXNDC11	51061	hgsc.bcm.edu	37	16	11785750	11785750	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_015914	exon8	c.G1296A	p.W432X	GGAGTGCCACTGG	.	29	4	30	0	.	.
TCF7L2	6934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	114901068	114901068	+	Silent	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001146283	exon6	c.C750A	p.P250P	AGACCCCAAAACA	.	46	18	62	0	.	.
INSM2	84684	hgsc.bcm.edu	37	14	36004201	36004201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	INSM2,NS,carcinoma,0,1	INSM2	NM_032594	exon1	c.C743T	p.A248V	CCGGAGCGCCGTC	.	34	2	57	0	.	0
ESRP1	54845	hgsc.bcm.edu;bcgsc.ca	37	8	95655629	95655629	+	Silent	SNP	T	T	C	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_001122827	exon3	c.T360C	p.P120P	GCATCCTGAGGCT	.	64	4	96	0	.	.
SYN3	8224	hgsc.bcm.edu	37	22	33376642	33376642	+	Silent	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	SYN3,caecum,carcinoma,0,1	SYN3	NM_001135774	exon3	c.C357A	p.I119I	CACTCGGATCTCA	.	28	3	57	0	.	0
RUNDC3A	10900	hgsc.bcm.edu	37	17	42392345	42392345	+	Silent	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	RUNDC3A_ENST00000225441,NS,carcinoma,0,2	RUNDC3A_ENST00000225441	NM_001144825	exon6	c.C597T	p.I199I	GGTCATCGATTAC	.	48	2	75	0	.	0
CSF1	1435	hgsc.bcm.edu	37	1	110456921	110456921	+	Missense_Mutation	SNP	C	C	A	rs202209718	alternate_allele	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CSF1,NS,carcinoma,0,1	CSF1	NM_172210	exon2	c.C80A	p.A27E	TCCTGGCGAGCAG	.	29	2	37	0	.	0
GPR124	25960	hgsc.bcm.edu	37	8	37692771	37692771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	GPR124,NS,carcinoma,0,1	GPR124	NM_032777	exon12	c.G1688T	p.R563M	TCCAGAGGAGGGA	.	47	2	73	0	.	0
ADAM7	8756	hgsc.bcm.edu	37	8	24300078	24300078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ADAM7,colon,carcinoma,0,1	ADAM7	NM_003817	exon2	c.G145T	p.D49Y	CATGATGATGACA	.	59	3	85	0	.	0
CATSPERD	257062	hgsc.bcm.edu	37	19	5768201	5768201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	TMEM146,caecum,carcinoma,0,1	TMEM146	NM_152784	exon18	c.G1582T	p.G528C	TCCATGGGCATCC	.	27	2	29	0	.	0
BAI1	575	hgsc.bcm.edu	37	8	143599537	143599537	+	Silent	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	BAI1,NS,carcinoma,0,1	BAI1	NM_001702	exon18	c.C2856T	p.I952I	GCTCATCGTGGGC	.	24	2	34	0	.	0
PLA2G15	23659	hgsc.bcm.edu	37	16	68289247	68289247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PLA2G15,ear,carcinoma,0,1	PLA2G15	NM_012320	exon4	c.G466A	p.V156I	GAGGATGTCCGAG	.	37	2	40	0	.	0
TCAIM	285343	hgsc.bcm.edu	37	3	44441862	44441862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	C3orf23,colon,carcinoma,0,1	C3orf23	NM_173826	exon9	c.C901T	p.P301S	AGATTGCCAAGTT	.	37	2	68	0	.	0
PZP	5858	hgsc.bcm.edu	37	12	9356365	9356365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	PZP,NS,carcinoma,0,1	PZP	NM_002864	exon2	c.C266A	p.T89N	CTCACAGTGAAGG	.	35	2	74	0	.	0
CDC27	996	hgsc.bcm.edu	37	17	45249328	45249328	+	Missense_Mutation	SNP	G	G	A	rs142853734		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	CDC27_ENST00000531206,NS,haematopoietic_neoplasm,0,2	CDC27_ENST00000531206	NM_001114091	exon3	c.C206T	p.P69L	CATTGCGGTGTAG	.	37	2	40	0	.	0
SLC35F2	54733	hgsc.bcm.edu	37	11	107686612	107686612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.,1	.	NM_017515	exon2	c.G190A	p.A64T	TTTCTGCCAAATA	.	45	2	93	0	.	29
TRIM13	10206	hgsc.bcm.edu;ucsc.edu	37	13	50590789	50590789	+	RNA	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	ATAGTTGCTCCTG	.	54	6	79	0	.	.
FAM214A	56204	hgsc.bcm.edu;bcgsc.ca	37	15	52874470	52874470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	NM_019600	exon13	c.C3112A	p.H1038N	CTCTATGGAGGTA	.	55	4	67	0	.	.
GON4L	54856	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155792141	155792141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	GON4L	NM_032292	exon4	c.G824A	p.R275H	AAGGTACGGTCAA	.	41	4	81	0	.	392
KIAA0317	9870	broad.mit.edu	37	14	75137486	75137486	+	Missense_Mutation	SNP	G	G	T	rs375792805	alternate_allele	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	KIAA0317	NM_001039479	exon13	c.C1587A	p.F529L	GTCACTGAACCGG	.	43	3	54	0	.	68
POTEG	404785	broad.mit.edu	37	14	19553567	19553567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	POTEG	NM_001005356	exon1	c.G151A	p.D51N	CACGACGATTCTG	.	258	24	372	0	.	118
KIAA1024	23251	broad.mit.edu	37	15	79750676	79750676	+	Silent	SNP	G	G	A	rs139072268		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	KIAA1024	NM_015206	exon2	c.G2187A	p.S729S	CAACTCGCCCAGA	.	42	3	56	0	G|1.000;A|0.000	146
HAGHL	84264	broad.mit.edu	37	16	777490	777490	+	Translation_Start_Site	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	HAGHL	.	.	.	.	GGCACCGGTGGCC	.	65	3	134	0	.	18
B9D1	27077	broad.mit.edu	37	17	19251158	19251158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	B9D1	NM_001243473	exon4	c.G339T	p.M113I	CGAACACATCTGG	.	21	3	29	0	.	8
RPTOR	57521	broad.mit.edu	37	17	78727809	78727809	+	Splice_Site	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	RPTOR	NM_001163034	exon6	c.655-1G>T	.	CCTTCAGGTAGCT	.	33	3	39	0	.	122
.	342850	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12125725	12125725	+	Silent	SNP	C	C	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	AATGCTCAATTCT	.	53	18	70	0	.	.
CYP2B7P1	0	broad.mit.edu	37	19	41448329	41448329	+	RNA	DEL	T	T	-	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	CYP2B7P1	.	.	.	.	AGGATCTTTTTTT	.	6	2	3	0	.	27
HDAC4	9759	broad.mit.edu;bcgsc.ca	37	2	240016733	240016733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	HDAC4,NS,carcinoma,0,1	HDAC4	NM_006037	exon17	c.C2238A	p.F746L	CCGGACGAACACG	.	104	8	183	1	.	127
DNAJB8	165721	broad.mit.edu;bcgsc.ca	37	3	128181874	128181874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	DNAJB8	NM_153330	exon3	c.G215A	p.S72N	CGCCAGCTGTCAC	.	31	3	53	0	.	34
PCDH7	5099	broad.mit.edu	37	4	30724013	30724013	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	PCDH7	NM_032457	exon1	c.969delG	p.P323fs	CGCCCCGGGGACC	.	6	2	15	0	.	215
CYP21A2	0	broad.mit.edu	37	6	31975463	31975463	+	RNA	SNP	T	T	C	rs370433041		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	CYP21A2	.	.	.	.	CGACTGTAGGAGG	.	51	5	111	0	.	42
HLA-F-AS1	0	broad.mit.edu	37	6	29706824	29706824	+	RNA	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	ACGATAGCCAAGA	.	4	2	10	0	.	.
TNRC18	84629	broad.mit.edu	37	7	5352833	5352833	+	Silent	SNP	G	G	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	TNRC18	NM_001080495	exon27	c.C7689T	p.S2563S	ACTACTGCTGCTG	.	41	3	65	0	.	311
FER1L6	654463	broad.mit.edu	37	8	124989685	124989685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	FER1L6	NM_001039112	exon10	c.C899T	p.A300V	ACTGTGCTGATCC	.	43	3	40	0	.	268
C1orf111	284680	ucsc.edu;bcgsc.ca	37	1	162343888	162343888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	C1orf111	NM_182581	exon3	c.C736A	p.P246T	CAGCAGGACTATT	.	23	4	34	0	.	26
TBC1D8	11138	ucsc.edu	37	2	101646196	101646196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	TBC1D8	NM_001102426	exon12	c.G1934A	p.G645D	AGATGACCCTTGA	.	17	4	27	1	.	169
GFM1	85476	ucsc.edu;bcgsc.ca	37	3	158364712	158364712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	GFM1	NM_024996	exon4	c.C548T	p.P183L	CCAACCCAGCCAG	.	31	4	37	0	.	83
ATN1	1822	ucsc.edu	37	12	7045885	7045885	+	Silent	SNP	A	A	G	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	ATN1	NM_001007026	exon5	c.A1455G	p.Q485Q	CCAGCAACAGCAA	.	46	8	74	7	.	95
NCOR2	9612	ucsc.edu	37	12	124839411	124839411	+	Silent	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	NCOR2	NM_006312	exon27	c.G3456A	p.L1152L	CAGGGGCAGCCCC	.	33	4	35	0	.	475
HEATR3	55027	ucsc.edu;bcgsc.ca	37	16	50118142	50118142	+	Silent	SNP	T	T	C	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	HEATR3	NM_182922	exon9	c.T1230C	p.S410S	GTTTTCTCCCCTC	.	35	4	62	0	.	59
MARK4	57787	ucsc.edu	37	19	45774944	45774944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	MARK4	NM_001199867	exon8	c.C764T	p.P255L	CCCTGCCCTTCGA	.	34	4	44	0	.	132
ABCD1	215	ucsc.edu	37	X	153006141	153006141	+	Missense_Mutation	SNP	T	T	A	rs79383557	bycluster	TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	ABCD1	NM_000033	exon7	c.T1748A	p.V583E	ACGTCGTGCACCT	.	39	10	22	3	.	59
.	343296	bcgsc.ca	37	1	79986906	79986906	+	RNA	SNP	G	A	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	CACACTGACACCT	.	15	3	21	0	.	.
KIAA0040	9674	bcgsc.ca	37	1	175129933	175129933	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	KIAA0040,colon,carcinoma,0,1	KIAA0040	NM_001162895	exon3	c.A217G	p.K73E	TCTTCTTCTTCTT	.	25	5	28	0	.	2
ACTN2	88	bcgsc.ca	37	1	236912525	236912525	+	Silent	SNP	G	A	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	ACTN2	NM_001103	exon14	c.G1617A	p.L539L	GGATCTGCAAGAT	.	20	3	31	0	.	191
.	50649	bcgsc.ca	37	2	131672961	131672961	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	CACCAAGAGCTGC	.	51	4	53	0	.	.
GLB1L	79411	bcgsc.ca	37	2	220102658	220102658	+	Silent	SNP	G	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	GLB1L	NM_024506	exon15	c.C1363A	p.R455R	TATTTCGCTCCAC	.	43	4	44	0	.	52
NR2C2	7182	bcgsc.ca	37	3	15062263	15062263	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	NR2C2	NM_003298	exon6	c.G437T	p.R146L	CAGGCCGTCACTA	.	30	3	68	0	.	44
SLC30A5	64924	bcgsc.ca	37	5	68423847	68423847	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	SLC30A5	NM_022902	exon15	c.G2015T	p.G672V	TTGAAGGATTAAT	.	23	3	68	0	.	54
HLA-DQA1	3117	bcgsc.ca	37	6	32609758	32609758	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	HLA-DQA1	NM_002122	exon3	c.A341G	p.E114G	TTCCTGAGGTCAC	.	25	3	39	0	.	52
GPNMB	10457	bcgsc.ca	37	7	23306191	23306191	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	GPNMB	NM_001005340	exon7	c.G1110T	p.Q370H	CTGCCAGATTAAC	.	58	4	64	0	.	88
.	0	bcgsc.ca	37	7	100944306	100944306	+	RNA	SNP	C	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	GAACAACAACATA	.	19	4	16	0	.	.
SH2B2	10603	bcgsc.ca	37	7	101960825	101960825	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	SH2B2	.	.	.	.	GGCCACGGCCAGT	.	39	4	41	0	.	22
LRRC43	254050	bcgsc.ca	37	12	122685442	122685442	+	Silent	SNP	G	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	LRRC43_ENST00000339777,colon,carcinoma,0,2	LRRC43	NM_001098519	exon10	c.G1770T	p.V590V	CGGCGTGGTCCGC	.	51	4	67	0	.	105
.	440142	bcgsc.ca	37	13	60849942	60849942	+	RNA	SNP	G	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	CAGTCAGGCCCAT	.	67	4	106	0	.	.
MYCBP2	23077	bcgsc.ca	37	13	77818052	77818052	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	MYCBP2	NM_015057	exon16	c.G2416A	p.A806T	ACACAGCACAACC	.	48	4	62	0	.	1029
RFWD3	55159	bcgsc.ca	37	16	74685875	74685875	+	Missense_Mutation	SNP	C	T	T	rs375666291		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	RFWD3	NM_018124	exon3	c.G664A	p.A222T	ACTCTGCAGAGCT	.	45	4	66	0	.	49
NLRP1	22861	bcgsc.ca	37	17	5462653	5462653	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	NLRP1	NM_033007	exon4	c.C1363A	p.L455M	TGATCAGGAAGGA	.	18	3	32	0	.	358
.	400652	bcgsc.ca	37	18	57817534	57817534	+	RNA	SNP	C	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	.	.	.	.	.	TGGGGACGAGACA	.	40	4	43	0	.	.
C19orf59	199675	bcgsc.ca	37	19	7741979	7741979	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	C19orf59	NM_174918	exon1	c.G12T	p.E4D	AGTGGAGGAAATC	.	56	4	68	0	.	15
ANO8	57719	bcgsc.ca	37	19	17435833	17435833	+	Silent	SNP	A	G	G	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	ANO8,caecum,carcinoma,0,1	ANO8	NM_020959	exon17	c.T3024C	p.P1008P	AGGGGGAGGCCGG	.	50	7	64	3	.	67
SIGLEC1	6614	bcgsc.ca	37	20	3687244	3687244	+	Silent	SNP	G	A	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	SIGLEC1,NS,neuroblastoma,-2,1	SIGLEC1	NM_023068	exon2	c.C159T	p.D53D	GATGCCGTCGGGC	.	52	4	60	0	.	210
DIAPH2	1730	bcgsc.ca	37	X	96212895	96212895	+	Silent	SNP	G	A	A	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	DIAPH2	NM_007309	exon16	c.G1683A	p.G561G	TGTAGGGCCGCCT	.	49	4	77	0	.	148
DMKN	93099	bcgsc.ca	37	19	36002411	36002412	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-YR-A95A-01A-12D-A417-09	TCGA-YR-A95A-10A-01D-A41A-09	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7134f2af-ddbf-48d5-862c-d3bc9e0fc833	820fc180-08c0-4786-9144-171d24ad2266	.	DMKN	NM_001126058	exon5	c.C819T	p.S274G	GCCACTGCTGCTG	.	50	5	66	0	.	116