Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
SETD2	29072	hgsc.bcm.edu	37	3	47125234	47125235	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_014159	exon12	c.6036_6037insT	p.L2012fs	GTCCAGGAGTTTG	.	55	29	106	0	.	.
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	211749440	211749445	+	In_Frame_Del	DEL	AAAAGT	AAAAGT	-	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	AAAAGT	AAAAGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SLC30A1,NS,carcinoma,0,1	SLC30A1	NM_021194	exon2	c.810_815del	p.270_272del	TCCAAGAAAAGTA	.	74	26	62	0	.	0
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	72776395	72776396	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	AG	AG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_017757	exon8	c.6717_6718del	p.2239_2240del	AGCCAAAGAGAAA	.	53	15	66	0	.	.
SLC25A33	84275	hgsc.bcm.edu	37	1	9640237	9640238	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_032315	exon6	c.708_709insA	p.L236fs	TGGACTTATGGCA	.	45	23	68	0	.	.
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52437221	52437221	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004656	exon14	c.1824delC	p.D608fs	CTGCTGTCCGTGG	.	22	15	33	0	.	.
TYK2	7297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	10468512	10468519	+	Frame_Shift_Del	DEL	CCACTTGT	CCACTTGT	-	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	CCACTTGT	CCACTTGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_003331	exon17	c.2388_2395del	p.796_799del	AAACCCCCACTTG	.	86	12	100	0	.	.
RNPC3	55599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	104077437	104077437	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_017619	exon4	c.T401G	p.L134R	AAGAACTTGGTTA	.	50	25	40	0	.	.
ABCC12	94160	hgsc.bcm.edu	37	16	48138174	48138174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	ABCC12,rectum,carcinoma,0,1	ABCC12	NM_033226	exon20	c.G2779A	p.A927T	TCTCTGCGTGAAA	.	29	2	36	0	.	0
NPSR1-AS1	404744	hgsc.bcm.edu	37	7	34797615	34797615	+	RNA	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	TTCATCCTCTGGA	.	74	4	60	0	.	.
OR6B1	135946	hgsc.bcm.edu;bcgsc.ca	37	7	143701151	143701151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001005281	exon1	c.T62C	p.L21S	GGAGCTTGAGTAT	.	54	4	63	0	.	.
HTT	3064	hgsc.bcm.edu	37	4	3076696	3076696	+	Silent	SNP	T	T	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_002111	exon1	c.T144G	p.P48P	GCCGCCTCCTCAG	.	14	6	6	0	.	.
SMURF1	57154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	98636132	98636132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_020429	exon15	c.C1645A	p.P549T	GTACAGGCGTGAT	.	42	4	37	0	.	.
OTOP1	133060	hgsc.bcm.edu	37	4	4204211	4204211	+	Missense_Mutation	SNP	G	G	A	rs200612216		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	OTOP1,NS,carcinoma,0,3	OTOP1	NM_177998	exon4	c.C694T	p.R232W	TGAGCCGTTCCTT	.	50	2	39	0	.	0
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	63042370	63042370	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_020700	exon10	c.C1444T	p.L482L	CCTTCAGCACACC	.	58	4	35	0	.	.
KIAA1109	84162	hgsc.bcm.edu	37	4	123107280	123107280	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	KIAA1109,NS,carcinoma,0,1	KIAA1109	NM_015312	exon5	c.G448T	p.E150X	CTTCAAGAGTTGT	.	67	2	146	0	.	0
MATK	4145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3778217	3778217	+	Silent	SNP	G	G	A	rs373868622		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_002378	exon14	c.C1491T	p.A497A	GCCGTCGGCGTCC	.	32	14	27	0	.	.
KIF3A	11127	hgsc.bcm.edu	37	5	132070088	132070088	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_007054	exon2	c.C89A	p.S30X	CACATTGATTTCT	.	81	3	75	0	.	.
TTC17	55761	hgsc.bcm.edu	37	11	43465625	43465625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	TTC17,right_upper_lobe,carcinoma,0,1	TTC17	NM_018259	exon18	c.G2531A	p.R844H	TCAAACGTGTAAA	.	47	2	53	0	.	0
OTOGL	283310	hgsc.bcm.edu;bcgsc.ca	37	12	80626733	80626733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_173591	exon8	c.G646T	p.V216L	ATTCTTGTGAAAA	.	69	4	70	0	.	.
PF4V1	5197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	74719786	74719786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_002620	exon3	c.G262A	p.D88N	TGCTTGGATCTGC	.	26	20	64	0	.	.
DOT1L	84444	hgsc.bcm.edu	37	19	2194519	2194519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_032482	exon7	c.G594T	p.M198I	GACCATGGACCGC	.	93	4	89	0	.	.
WTIP	126374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34981373	34981373	+	Missense_Mutation	SNP	G	G	T	rs373500546	alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001080436	exon2	c.G760T	p.D254Y	ACCTGCGACTCGT	.	46	5	38	0	.	.
KIF22	3835	hgsc.bcm.edu	37	16	29810382	29810382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_007317	exon5	c.G636T	p.Q212H	CTCCCAGAAGCCC	.	97	4	97	0	.	.
THPO	7066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184091269	184091269	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001177598	exon5	c.C330T	p.L110L	CCCCAGGAGGGAT	.	48	19	41	0	.	.
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1052002	1052002	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_019112	exon22	c.G3024A	p.V1008V	CCGTGTGGCCGTG	.	33	12	29	0	.	.
UPRT	139596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	74494297	74494297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_145052	exon1	c.G208A	p.G70S	GCCTGCGGCGGCT	.	24	22	26	0	.	.
ZNF485	220992	hgsc.bcm.edu	37	10	44104181	44104181	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_145312	exon3	c.G144T	p.V48V	TCTGGTGTCTGTG	.	84	4	81	0	.	.
RBM25	58517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73576153	73576153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_021239	exon14	c.C1645T	p.R549C	AGGCAGCGCCTTC	.	25	19	54	0	.	.
CTNND2	1501	hgsc.bcm.edu	37	5	11199612	11199612	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CTNND2,NS,carcinoma,0,1	CTNND2	NM_001332	exon11	c.G1923A	p.L641L	CCTCACCAGTGCT	.	72	3	76	0	.	0
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56099137	56099137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001269044	exon1	c.G125A	p.R42Q	GGGCTCCGATGGT	.	33	9	44	0	.	.
SYNPO2L	79933	hgsc.bcm.edu;bcgsc.ca	37	10	75406952	75406952	+	Missense_Mutation	SNP	A	A	G	rs200429699		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SYNPO2L_ENST00000394810,NS,carcinoma,+1,2	SYNPO2L_ENST00000394810	NM_001114133	exon4	c.T2458C	p.F820L	GGAAAAAGGGAGA	.	26	4	51	0	.	+1
ABCC4	10257	hgsc.bcm.edu;bcgsc.ca	37	13	95816668	95816668	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_005845	exon16	c.C2139A	p.V713V	AATGAAGACAATC	.	91	4	117	0	.	.
C18orf54	162681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	51888024	51888024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_173529	exon3	c.C295A	p.L99I	GAAAACCTTGATC	.	77	21	113	0	.	.
SNORD36B	26814	hgsc.bcm.edu;ucsc.edu	37	9	136216982	136216982	+	RNA	SNP	T	T	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	TGAAATTACTGTG	.	25	9	39	0	.	.
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1668821	1668821	+	Silent	SNP	A	A	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_012293	exon11	c.T1317C	p.P439P	GTCCTGAGGCGTC	.	76	17	72	0	.	.
ABCC6P2	730013	hgsc.bcm.edu	37	16	14916703	14916703	+	RNA	SNP	C	C	A	rs71390963	alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	TCCCCCCACCATT	.	64	13	81	0	.	.
DPY19L2P1	554236	hgsc.bcm.edu	37	7	35189650	35189650	+	RNA	SNP	A	A	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	TTTGAAATTCTAG	.	57	10	17	0	.	.
MUC16	94025	hgsc.bcm.edu	37	19	9090831	9090831	+	Silent	SNP	A	A	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	MUC16_ENST00000397910,bladder,carcinoma,0,2	MUC16_ENST00000397910	NM_024690	exon1	c.T984C	p.P328P	GGAAAAAGGGATA	.	34	2	31	1	.	0
SPATA18	132671	hgsc.bcm.edu	37	4	52945942	52945942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SPATA18_ENST00000295213,NS,carcinoma,0,4	SPATA18_ENST00000295213	NM_145263	exon9	c.G1212T	p.K404N	TCCCAAGATTTCA	.	60	3	65	1	.	0
INHBB	3625	hgsc.bcm.edu	37	2	121107289	121107289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	INHBB,caecum,carcinoma,0,1	INHBB	NM_002193	exon2	c.G1063T	p.V355L	GCTGTGGTGAACC	.	42	3	37	0	.	0
KRTAP10-4	386672	hgsc.bcm.edu	37	21	45994302	45994302	+	Missense_Mutation	SNP	T	T	C	rs201123486	bycluster	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	KRTAP10-4,NS,carcinoma,0,1	KRTAP10-4	NM_198687	exon1	c.T667C	p.S223P	TCCTCCTCCTGCC	.	53	3	42	1	.	0
GTDC1	79712	hgsc.bcm.edu	37	2	144709619	144709619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001006636	exon11	c.C1223A	p.P408H	TGTTCAGGTGTAG	.	86	4	75	0	.	.
APBB1	322	hgsc.bcm.edu	37	11	6432092	6432092	+	Missense_Mutation	SNP	C	C	A	rs145320037		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	APBB1,NS,carcinoma,0,1	APBB1	NM_001164	exon2	c.G486T	p.E162D	ATCATCCTCCTCC	.	25	2	24	0	0.000	0
TLK2	11011	hgsc.bcm.edu	37	17	60679483	60679483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	TLK2_ENST00000346027,right_upper_lobe,carcinoma,0,3	TLK2_ENST00000346027	NM_006852	exon19	c.G1801T	p.D601Y	GATGATGATAGCT	.	62	3	58	0	.	0
KIAA0355	9710	hgsc.bcm.edu;bcgsc.ca	37	19	34832636	34832636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_014686	exon10	c.G1797T	p.R599S	CCCCAGGACTACA	.	65	4	60	0	.	.
PRKCD	5580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	53217486	53217486	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_212539	exon8	c.A676C	p.N226H	CGCTTCAACATCG	.	43	31	62	0	.	.
ZNF234	10780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44660536	44660536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_006630	exon6	c.C367T	p.R123W	ATTTCTCGGTTCC	.	73	24	72	0	.	.
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	2833	2833	+	RNA	SNP	A	A	C	rs199713564	alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	AGCAGAACCCAAC	.	562	129	525	0	.	.
ACAD8	27034	hgsc.bcm.edu	37	11	134128487	134128487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	ACAD8,rectum,carcinoma,0,1	ACAD8	NM_014384	exon4	c.G459T	p.E153D	CATGGAGAAGTTT	.	18	2	61	0	.	0
DPY19L3	147991	hgsc.bcm.edu	37	19	32968452	32968452	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001172774	exon17	c.G1722A	p.V574V	GGCTGTGTTTGCG	.	99	4	90	0	.	.
COL6A3	1293	hgsc.bcm.edu	37	2	238283545	238283545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	COL6A3_ENST00000392004,NS,carcinoma,0,2	COL6A3_ENST00000392004	NM_004369	exon8	c.C3189A	p.D1063E	GACCCGGTCCTGG	.	23	2	27	0	.	0
SNIP1	79753	hgsc.bcm.edu	37	1	38006254	38006254	+	Missense_Mutation	SNP	G	G	A	rs143428642	bycluster	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SNIP1,rectum,carcinoma,0,1	SNIP1	NM_024700	exon3	c.C430T	p.R144W	GGCCCCGGTGTCT	.	48	3	48	0	0.000	0
CSDC2	27254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41970815	41970815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_014460	exon4	c.G378T	p.K126N	CCAGAAGTTCCAG	.	56	4	68	0	.	.
WDR52	55779	hgsc.bcm.edu	37	3	113010415	113010415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001164496	exon35	c.G5554A	p.A1852T	GGTCTGCGGGCTG	.	61	4	78	0	.	.
C14orf159	80017	hgsc.bcm.edu	37	14	91666203	91666203	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	C14orf159,colon,carcinoma,0,2	C14orf159	NM_001102368	exon11	c.C1398T	p.D466D	CATTGACGATCTT	.	33	2	79	0	.	0
PPP1R13B	23368	hgsc.bcm.edu	37	14	104202439	104202439	+	Missense_Mutation	SNP	G	G	T	rs371359449	alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	PPP1R13B,colon,carcinoma,0,1	PPP1R13B	NM_015316	exon16	c.C3132A	p.D1044E	GAGGGCGTCCCCT	.	47	2	58	0	.	0
DRD5	1816	hgsc.bcm.edu	37	4	9784785	9784785	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	DRD5,NS,carcinoma,0,4	DRD5	NM_000798	exon1	c.T1132G	p.F378V	AGCCACTTCTGCT	.	27	2	27	0	.	0
SH3BP1	23616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38049853	38049853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_018957	exon17	c.G1666A	p.A556T	ACAGCTGCCCCAG	.	178	114	122	0	.	.
OR8B3	390271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	124266860	124266860	+	Silent	SNP	A	A	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001005467	exon1	c.T388C	p.L130L	ACAGCAATGGATT	.	42	24	54	0	.	.
LRCH2	57631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	114357150	114357150	+	Silent	SNP	T	T	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_020871	exon20	c.A2118G	p.A706A	ACATTTTGCCATG	.	97	34	110	0	.	.
THPO	7066	hgsc.bcm.edu	37	3	184090560	184090560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	THPO,NS,carcinoma,0,1	THPO	NM_000460	exon6	c.C803A	p.T268N	CCTAGGGTCCTGC	.	49	2	33	0	.	0
CCDC132	55610	hgsc.bcm.edu	37	7	92970748	92970748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_017667	exon23	c.G2068T	p.A690S	GTTTCAGCTGATC	.	98	4	82	0	.	.
B3GNT6	192134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76751719	76751719	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_138706	exon5	c.C1121T	p.A374V	GCCCCGCGCTCAG	.	45	17	45	0	.	.
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	20535338	20535338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004787	exon18	c.T1832C	p.L611S	AAACTTTGTAAGT	.	144	18	123	0	.	.
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152936621	152936621	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001039582	exon8	c.C888T	p.Y296Y	CTCGTCGTAGAAG	.	31	7	31	0	.	.
RASAL3	64926	hgsc.bcm.edu	37	19	15572380	15572380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	RASAL3,NS,carcinoma,0,1	RASAL3	NM_022904	exon3	c.C367A	p.Q123K	GGATCTGTGGGGT	.	40	3	50	0	.	0
GPRC5C	55890	hgsc.bcm.edu	37	17	72436467	72436467	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	GPRC5C_ENST00000392629,caecum,carcinoma,0,2	GPRC5C_ENST00000392629	NM_022036	exon2	c.C687T	p.G229G	CAGTGGCGAGGGC	.	33	2	35	0	.	0
ZNF786	136051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148769283	148769283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_152411	exon4	c.A581C	p.E194A	CAGCTTTCCCCGC	.	70	29	61	0	.	.
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	166963277	166963277	+	Missense_Mutation	SNP	G	G	A	rs199624416	bycluster	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_032858	exon5	c.G494A	p.R165Q	TTCCACGAGGATT	.	141	20	79	0	0.001	.
ADARB2-AS1	642394	hgsc.bcm.edu	37	10	1577160	1577160	+	RNA	SNP	T	T	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	ACCGGGTGAGAAG	.	94	26	120	0	.	.
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49030571	49030571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001194998	exon27	c.G5008T	p.D1670Y	TGAAATCTGACTT	.	101	22	118	0	.	.
MRPL45	84311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36453189	36453189	+	Silent	SNP	A	A	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_032351	exon1	c.A40C	p.R14R	TTATCGAGGTTTT	.	98	20	80	0	.	.
GIMAP2	26157	hgsc.bcm.edu;broad.mit.edu	37	7	150389906	150389906	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	GIMAP2,colon,carcinoma,0,2	GIMAP2	NM_015660	exon3	c.C532T	p.R178X	GGTGGGCGAATCT	.	47	3	70	0	.	0
DHX8	1659	hgsc.bcm.edu;bcgsc.ca	37	17	41597543	41597543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004941	exon19	c.C2845T	p.P949S	GATGCCCCACCTA	.	74	4	60	0	.	.
SNX20	124460	hgsc.bcm.edu;bcgsc.ca	37	16	50707593	50707593	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_182854	exon4	c.C675T	p.A225A	GACGGCGGCCGCA	.	14	9	24	0	.	.
LINC00674	100499466	hgsc.bcm.edu	37	17	66122043	66122043	+	RNA	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	AAAAAAGAAAAAA	.	47	5	22	0	.	.
KCNK16	83795	hgsc.bcm.edu	37	6	39285610	39285610	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001135106	exon3	c.C447A	p.A149A	CAGATGGGCACGC	.	75	4	83	0	.	.
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30054251	30054251	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.,1	.	NM_000268	exon7	c.C673T	p.R225W	GCAATCCGGGTGT	.	52	5	72	0	.	1312
WIPI1	55062	hgsc.bcm.edu	37	17	66417950	66417950	+	Silent	SNP	G	G	A	rs146678987	alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	WIPI1,NS,carcinoma,0,1	WIPI1	NM_017983	exon13	c.C1305T	p.C435C	TCCACGGCACAAG	.	53	3	41	0	.	0
PLEKHG2	64857	hgsc.bcm.edu;bcgsc.ca	37	19	39914272	39914272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_022835	exon18	c.C2578T	p.P860S	TGTCTGCCCCAGG	.	67	4	80	0	.	.
PAXIP1	22976	hgsc.bcm.edu;bcgsc.ca	37	7	154760124	154760124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_007349	exon7	c.C1787T	p.P596L	ACTGCTGGATCAT	.	42	4	30	0	.	.
NSMF	26012	hgsc.bcm.edu	37	9	140348862	140348862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001178064	exon7	c.C813A	p.S271R	CCTCCGGCTGCCG	.	71	4	100	0	.	.
C17orf77	146723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72588674	72588674	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_152460	exon3	c.G489C	p.L163F	AGCATTGAGGAGC	.	57	14	36	0	.	.
DEPDC7	91614	hgsc.bcm.edu	37	11	33054930	33054930	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001077242	exon9	c.G1465T	p.E489X	GCCAAAGAGAAGA	.	90	4	73	0	.	.
ARPC2	10109	hgsc.bcm.edu	37	2	219104121	219104121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	ARPC2,right_lower_lobe,carcinoma,0,1	ARPC2	NM_005731	exon6	c.G463A	p.E155K	TATGTTGAGTCTA	.	50	2	63	0	.	0
PROZ	8858	hgsc.bcm.edu	37	13	113814370	113814370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	PROZ,ear,carcinoma,0,1	PROZ	NM_001256134	exon3	c.G179T	p.W60L	TGAGGTGGAAGCG	.	43	2	36	0	.	0
RYR3	6263	hgsc.bcm.edu	37	15	34102761	34102761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	RYR3,NS,carcinoma,0,1	RYR3	NM_001036	exon71	c.G10108A	p.A3370T	GTGGCTGCACTCA	.	43	3	53	0	.	0
ARAF	369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47426127	47426127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001256196	exon7	c.C656T	p.P219L	CCACTCCCAACGT	.	58	48	70	0	.	.
ANKRD45	339416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173628573	173628573	+	Splice_Site	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	AAATACCTATGAC	.	65	17	54	0	.	.
CNTNAP4	85445	hgsc.bcm.edu	37	16	76486447	76486447	+	Missense_Mutation	SNP	G	G	T	rs139625830	bycluster;alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CNTNAP4_ENST00000478060,colon,carcinoma,0,6	CNTNAP4_ENST00000478060	NM_138994	exon7	c.G895T	p.V299L	ATGCCCGTGACTT	.	40	2	67	0	.	0
NOL12	79159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38084863	38084863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_024313	exon4	c.C245A	p.A82E	AGGAGGCAGATGA	.	73	22	49	0	.	.
REXO4	57109	hgsc.bcm.edu	37	9	136279959	136279959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	REXO4,mucosal,malignant_melanoma,0,2	REXO4	NM_020385	exon2	c.C398A	p.P133H	CCTGAAGGAACAG	.	44	3	69	0	.	0
DHCR24	1718	hgsc.bcm.edu	37	1	55352654	55352654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	DHCR24,bladder,carcinoma,0,1	DHCR24	NM_014762	exon1	c.G139T	p.D47Y	AGATATCGAAGAT	.	20	2	19	0	.	0
RNR1	6052	hgsc.bcm.edu	37	MT	1440	1440	+	RNA	SNP	G	G	A	rs200309123	bycluster	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	AACTAAGAGTAGA	.	7	4	19	0	.	.
SMS	6611	hgsc.bcm.edu	37	X	21996164	21996164	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004595	exon6	c.G592T	p.G198X	ATTCTGGGAGGTG	.	71	3	55	0	.	.
PTH2	113091	hgsc.bcm.edu;broad.mit.edu	37	19	49926533	49926533	+	Missense_Mutation	SNP	G	G	C	rs200733272	bycluster	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	PTH2,NS,carcinoma,0,9	PTH2	NM_178449	exon1	c.C64G	p.L22V	CCACCAGCAGCAG	.	107	6	99	2	.	0
KRT3	3850	hgsc.bcm.edu	37	12	53183978	53183978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	KRT3,colon,carcinoma,0,1	KRT3	NM_057088	exon9	c.G1735A	p.G579S	TGCTGCCGCCGCC	.	47	5	21	1	.	0
FAM35A	54537	hgsc.bcm.edu	37	10	88946934	88946934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_019054	exon8	c.C2285T	p.A762V	TTTCTGCAGACTG	.	80	3	104	0	.	.
TP53RK	112858	hgsc.bcm.edu	37	20	45315633	45315633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.,1	.	NM_033550	exon2	c.T521C	p.L174P	TGTTCCAGGGGGG	.	42	2	44	0	.	13
CLCN6	1185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11897068	11897068	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CLCN6,trunk,malignant_melanoma,0,1	CLCN6	NM_001286	exon19	c.C1993G	p.L665V	AGCATCCTCACCC	.	10	6	21	0	.	0
ZNF780B	163131	hgsc.bcm.edu	37	19	40540576	40540576	+	Silent	SNP	G	G	A	rs376431224		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	ZNF780B_ENST00000434248,NS,carcinoma,0,2	ZNF780B_ENST00000434248	NM_001005851	exon5	c.C2190T	p.C730C	CTTTCCGCATTCT	.	63	3	66	0	.	0
KIAA1456	57604	hgsc.bcm.edu	37	8	12870249	12870249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_020844	exon4	c.G211T	p.D71Y	GGCTGTGACTACT	.	86	4	96	0	.	.
GNN	0	hgsc.bcm.edu	37	12	104251050	104251050	+	RNA	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	AAGTTTGCATCAA	.	85	3	82	0	.	.
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	46940168	46940168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001184744	exon8	c.C655T	p.R219C	TGCACGCGCAACT	.	15	7	19	0	.	.
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52662939	52662939	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_018313	exon13	c.C1414T	p.R472X	GAACTCGCTTGTA	.	41	11	74	0	.	.
CHD1L	9557	hgsc.bcm.edu;bcgsc.ca	37	1	146724303	146724303	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004284	exon2	c.G153T	p.L51L	CCAGCTGGAGGGA	.	71	4	64	0	.	.
GPR110	266977	hgsc.bcm.edu	37	6	46977650	46977650	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_153840	exon11	c.C1521A	p.S507S	AACCGTGGATATC	.	78	4	71	0	.	.
RBFA	79863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	77802202	77802202	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_024805	exon5	c.A559C	p.N187H	AAGGGAAATGCAG	.	39	10	73	0	.	.
HADHB	3032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26512787	26512787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_000183	exon16	c.G1391A	p.G464D	TACAGGGCCATGC	.	68	13	60	0	.	.
FMO6P	388714	hgsc.bcm.edu	37	1	171116726	171116726	+	RNA	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	TAATTTCTGAAAA	.	90	18	70	0	.	.
TTLL6	284076	hgsc.bcm.edu	37	17	46862554	46862554	+	Missense_Mutation	SNP	G	G	T	rs148198060	alternate_allele	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	TTLL6_ENST00000393382,NS,carcinoma,0,2	TTLL6_ENST00000393382	NM_001130918	exon13	c.C1771A	p.P591T	TCAATGGCTGGAT	.	47	2	45	0	.	0
CTNNA3	29119	hgsc.bcm.edu	37	10	68381522	68381522	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CTNNA3_ENST00000433211,NS,carcinoma,0,2	CTNNA3_ENST00000433211	NM_013266	exon10	c.C1302A	p.S434S	TGACATGGAACAA	.	70	2	60	0	.	0
C6orf170	221322	hgsc.bcm.edu	37	6	121481233	121481233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	C6orf170,NS,carcinoma,0,1	C6orf170	NM_152730	exon24	c.C2696A	p.P899H	GGCCAAGGATATG	.	44	2	35	0	.	0
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	132193245	132193245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001105543	exon2	c.C208T	p.R70W	AAATCCGATTGAC	.	98	41	89	0	.	.
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	6	90362819	90362819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_014611	exon94	c.C15717A	p.D5239E	TCTGGGGTCTTGG	.	51	4	88	0	.	.
ZNF846	162993	hgsc.bcm.edu	37	19	9869374	9869374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001077624	exon6	c.C379A	p.P127T	GAAATGGGTGTTC	.	64	4	33	0	.	.
FOXS1	2307	hgsc.bcm.edu	37	20	30433234	30433234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004118	exon1	c.C112T	p.R38W	TGGCCCGCTGCCC	.	95	4	123	0	.	.
ANKRD20A8P	729171	hgsc.bcm.edu	37	2	95464459	95464459	+	RNA	SNP	A	A	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	AAACTTACCTGAT	.	228	40	95	0	.	.
SPATA20	64847	hgsc.bcm.edu	37	17	48629444	48629444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_022827	exon14	c.G1860T	p.Q620H	GCTGCAGGACACA	.	94	4	92	0	.	.
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37900277	37900277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_014550	exon9	c.A1550G	p.N517S	AGCCGATTGATCT	.	22	8	28	0	.	.
MUC4	4585	hgsc.bcm.edu	37	3	195505863	195505863	+	Silent	SNP	G	G	A	rs113561118		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C12588T	p.T4196T	AGTGTCGGTGACA	.	105	8	97	0	.	0
ITGA4	3676	hgsc.bcm.edu;bcgsc.ca	37	2	182395369	182395369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_000885	exon24	c.G2657T	p.R886M	ATAAGAGGCTATT	.	70	4	102	0	.	.
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu	37	11	3249154	3249154	+	Silent	SNP	G	G	A	rs373696773		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001039165	exon2	c.C876T	p.D292D	AGCCTCGTCTCCC	.	8	6	13	0	.	.
CNTFR	1271	hgsc.bcm.edu	37	9	34557626	34557626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CNTFR,colon,carcinoma,0,2	CNTFR	NM_147164	exon6	c.T502C	p.Y168H	GCATGTAGCGAAT	.	29	3	76	0	.	0
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169145773	169145773	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	DOCK2,NS,malignant_melanoma,0,1	DOCK2	NM_004946	exon22	c.C2245T	p.R749W	ATTGTTCGGTCGA	.	107	12	103	0	.	0
GALM	130589	hgsc.bcm.edu	37	2	38958894	38958894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_138801	exon6	c.G794T	p.S265I	CTGCAAGCGGGCG	.	35	4	38	0	.	.
SYNE1	23345	hgsc.bcm.edu	37	6	152737535	152737535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SYNE1_ENST00000265368,NS,carcinoma,0,2	SYNE1_ENST00000265368	NM_033071	exon41	c.G6058T	p.A2020S	GAAGAGCTTGGCG	.	36	2	39	0	.	0
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	71491937	71491937	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_005909	exon5	c.G2755T	p.G919X	AAGCAGGGAGTAG	.	53	16	43	0	.	.
SIM2	6493	hgsc.bcm.edu	37	21	38114120	38114120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	SIM2_ENST00000430056,NS,carcinoma,0,2	SIM2_ENST00000430056	NM_005069	exon8	c.G953A	p.R318H	ACAGCCGCTCGTC	.	44	2	76	0	.	0
NFKBIZ	64332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101572374	101572374	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_031419	exon5	c.G1004T	p.C335F	AGTTTTGCCCAAA	.	41	21	85	0	.	.
ZSCAN1	284312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58549386	58549386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_182572	exon3	c.C182T	p.T61M	TCTGGACGCTGTG	.	39	8	45	0	.	.
CDH17	1015	hgsc.bcm.edu;broad.mit.edu	37	8	95186446	95186446	+	Missense_Mutation	SNP	G	G	A	rs376397791		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CDH17,NS,carcinoma,0,2	CDH17	NM_004063	exon6	c.C467T	p.P156L	GTGGCCGGATCAT	.	75	5	65	1	.	0
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62237282	62237282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_176877	exon6	c.C704A	p.T235K	ATGATACAACTCT	.	67	30	82	0	.	.
ZYX	7791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143080207	143080207	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_003461	exon5	c.A815C	p.K272T	CTCCTAAGTTTAC	.	76	26	76	0	.	.
L1TD1	54596	hgsc.bcm.edu;broad.mit.edu	37	1	62672856	62672856	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001164835	exon4	c.G556T	p.G186X	AGAGATGGAAATC	.	100	7	92	0	.	.
SERPINE2	5270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	224856592	224856592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_001136530	exon4	c.C649T	p.R217C	AAGTGCGTTTCTT	.	78	14	54	0	.	.
VPS26A	9559	hgsc.bcm.edu;bcgsc.ca	37	10	70928304	70928304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_004896	exon8	c.G787T	p.D263Y	ATGAGAGATGTGA	.	53	4	55	0	.	.
QRFPR	84109	hgsc.bcm.edu	37	4	122301568	122301568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	QRFPR,colon,carcinoma,0,1	QRFPR	NM_198179	exon1	c.G235A	p.V79I	TGGTGACGGTGCG	.	21	2	42	0	.	0
STK11IP	114790	hgsc.bcm.edu	37	2	220473349	220473349	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	STK11IP_ENST00000295641,NS,carcinoma,0,3	STK11IP_ENST00000295641	NM_052902	exon15	c.G1681T	p.E561X	GGGCCTGAGGGCG	.	34	2	37	0	.	0
HHIPL2	79802	hgsc.bcm.edu	37	1	222715437	222715437	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_024746	exon3	c.C1035A	p.G345G	ATCCAGGCCAAAA	.	69	4	57	0	.	.
MUC16	94025	hgsc.bcm.edu	37	19	9083333	9083333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	MUC16_ENST00000397910,NS,carcinoma,0,2	MUC16_ENST00000397910	NM_024690	exon1	c.G8482A	p.A2828T	ACATGGCTGTAAC	.	47	2	47	0	.	0
ZBTB49	166793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	4304317	4304317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_145291	exon3	c.G754T	p.V252L	ACCACGGTAGAGA	.	32	5	17	0	.	.
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68275965	68275965	+	Silent	SNP	A	A	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_015346	exon4	c.T315C	p.L105L	CAATAAAAGAAAC	.	44	36	77	0	.	.
CAMK2D	817	hgsc.bcm.edu	37	4	114680566	114680566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_172128	exon2	c.G70A	p.A24T	AGAATGCCCCCCT	.	95	2	178	0	.	.
RBM42	79171	hgsc.bcm.edu;bcgsc.ca	37	19	36123879	36123879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_024321	exon5	c.G484T	p.V162F	GCCTTCGTCCCCC	.	56	4	42	0	.	.
PVRL3	25945	hgsc.bcm.edu;bcgsc.ca	37	3	110852607	110852607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	NM_015480	exon6	c.G1195T	p.D399Y	ATTAAGGATGACA	.	62	4	88	0	.	.
.	388677	broad.mit.edu;bcgsc.ca	37	1	145290447	145290447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	TCTTTCCTAAGCT	.	467	10	325	0	.	.
PRG4	10216	broad.mit.edu	37	1	186276029	186276029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	PRG4	NM_005807	exon7	c.C1178A	p.P393H	CCACTCCCAAGGA	.	197	5	145	0	.	259
UHMK1	127933	broad.mit.edu	37	1	162468011	162468011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	UHMK1	NM_144624	exon1	c.G221T	p.R74L	GTTTCCGCAAAGA	.	52	3	32	0	.	65
MUC2	4583	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1096456	1096456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	MUC2_ENST00000441003,NS,carcinoma,0,1	MUC2	NM_002457	exon35	c.G6469A	p.D2157N	TACATCGACAACT	.	26	4	22	0	.	614
OVCH2	341277	broad.mit.edu	37	11	7716913	7716913	+	RNA	SNP	T	T	A	rs372744251		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	OVCH2	.	.	.	.	AATGGATGAGGCC	.	26	2	36	1	.	47
HERC2P3	0	broad.mit.edu	37	15	20613810	20613810	+	RNA	SNP	A	A	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	HERC2P3	.	.	.	.	GTGAGAAGCAGAG	.	35	3	45	0	.	53
HERC2P3	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	20643872	20643872	+	RNA	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	HERC2P3	.	.	.	.	GCAAACGTGACAC	.	179	46	205	0	.	53
MVP	9961	broad.mit.edu	37	16	29855899	29855899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	MVP	NM_017458	exon11	c.G1720T	p.A574S	TGCAAAGCCATCG	.	31	3	33	0	.	80
.	400986	broad.mit.edu	37	2	96643871	96643871	+	Splice_Site	SNP	T	T	C	rs201215924		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	ENSG00000174501,NS,carcinoma,0,2	.	.	.	.	.	CTTACCTGGATTG	.	149	8	39	1	.	.
TPTE	7179	broad.mit.edu	37	21	10944697	10944697	+	Frame_Shift_Del	DEL	A	A	-	rs377457864		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	TPTE	NM_199261	exon11	c.537delT	p.F179fs	AATGTCAAAAAAA	.	217	7	128	0	.	513
CYP2D6	1565	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42526688	42526688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	CYP2D6	NM_000106	exon1	c.G106T	p.G36C	GGGGGCCTGGTGG	.	66	12	60	0	.	104
.	0	broad.mit.edu	37	3	22424366	22424366	+	RNA	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	TTTGTTGACATTC	.	41	7	34	0	.	.
CAMK2D	817	broad.mit.edu	37	4	114435036	114435036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	CAMK2D	NM_172128	exon11	c.C853A	p.Q285K	TCTCCTGTCTGTG	.	48	3	98	0	.	55
CATSPER3	347732	broad.mit.edu;bcgsc.ca	37	5	134305631	134305631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	CATSPER3	NM_178019	exon2	c.G101T	p.R34M	ACAGGAGGAACGA	.	68	4	66	0	.	38
.	0	broad.mit.edu	37	5	33162972	33162972	+	RNA	SNP	C	C	A	rs7447930	bycluster	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	CCCCCCCCAAAAA	.	52	13	52	5	.	.
RUFY1	80230	broad.mit.edu	37	5	178977642	178977642	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	RUFY1	NM_025158	exon1	c.72delG	p.P24fs	GGGGCCGGGGCCC	.	6	1	4	0	.	101
PGBD1	84547	broad.mit.edu	37	6	28251597	28251597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	PGBD1	NM_001184743	exon2	c.G7A	p.E3K	ATGTATGAAGCTT	.	31	3	31	0	.	106
COL26A1	136227	broad.mit.edu	37	7	101071948	101071949	+	RNA	DEL	GT	GT	-	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	GTGGTCGTGTGTG	.	6	1	5	0	.	.
DPY19L2P2	0	broad.mit.edu	37	7	102898132	102898132	+	RNA	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	AATTCACTATTCC	.	154	7	151	0	.	.
FOXP2	93986	broad.mit.edu	37	7	114269938	114269949	+	In_Frame_Del	DEL	CAGCAGCAACAA	CAGCAGCAACAA	-	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	FOXP2,NS,carcinoma,0,1	FOXP2	NM_001172767	exon5	c.550_561del	p.184_187del	CAGCAGCAGCAGC	.	51	4	53	0	.	133
GRM3	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	86416121	86416121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	GRM3	NM_000840	exon3	c.A1013G	p.Q338R	ACTTCCAGAGCCT	.	43	4	26	0	.	237
PMS2P3	0	broad.mit.edu	37	7	75141201	75141202	+	RNA	DEL	TA	TA	-	rs372497718	bycluster	TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	PMS2P3	.	.	.	.	TATGTGTATATAT	.	6	1	4	0	.	7
.	0	broad.mit.edu;ucsc.edu	37	7	142511015	142511015	+	RNA	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	ACAGACGCCTCCT	.	32	17	30	0	.	.
ZNF467	168544	broad.mit.edu	37	7	149462038	149462038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	ZNF467	NM_207336	exon5	c.C1553A	p.A518D	CAGACGGCGCAGG	.	43	3	40	0	.	50
COX2	4513	broad.mit.edu	37	MT	7820	7820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	ENST00000361739	exon1	c.C235T	p.P79S	GCCCTCCCATCCC	.	1592	12	1282	0	.	.
TMEM200B	399474	ucsc.edu	37	1	29447458	29447458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	TMEM200B	NM_001171868	exon2	c.G883A	p.A295T	ATTTGGCATAGCC	.	34	4	73	0	.	9
HDGF	3068	ucsc.edu;bcgsc.ca	37	1	156714048	156714048	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	HDGF	NM_001126050	exon4	c.C444T	p.S148S	GTCGCTGCTGCCC	.	35	4	32	0	.	60
.	0	bcgsc.ca	37	3	48162464	48162464	+	RNA	SNP	T	C	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	CACCAATTTTGTG	.	30	9	43	0	.	.
PSMD6	9861	bcgsc.ca	37	3	64008458	64008458	+	Silent	SNP	C	T	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	PSMD6	NM_001271779	exon2	c.G165A	p.R55R	CTCTTGCCGGATT	.	22	3	34	0	.	30
.	391634	bcgsc.ca	37	4	13339615	13339615	+	RNA	SNP	G	T	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	ATGGAAGCGGGAC	.	72	4	87	0	.	.
.	0	bcgsc.ca	37	4	49490648	49490648	+	RNA	SNP	T	A	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	TGTTTTTTATATT	.	206	68	85	0	.	.
TPD52L1	7164	bcgsc.ca	37	6	125584047	125584047	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	TPD52L1	NM_003287	exon7	c.C554T	p.A185V	CCCATGCCAGTGC	.	20	3	28	0	.	14
TTYH3	80727	bcgsc.ca	37	7	2685484	2685484	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	TTYH3	.	.	.	.	CCTCAGGACTACA	.	42	4	52	0	.	36
.	2667	bcgsc.ca	37	7	48942831	48942831	+	RNA	SNP	G	A	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	ACTTTTGACGTAT	.	54	25	42	0	.	.
SFMBT2	57713	bcgsc.ca	37	10	7212892	7212892	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	SFMBT2	NM_001029880	exon20	c.C2542A	p.Q848K	GTACCTGCTCCTG	.	42	4	63	0	.	209
.	8595	bcgsc.ca	37	11	55483081	55483081	+	RNA	SNP	T	A	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	GTGGCCTCTGTCT	.	41	14	72	0	.	.
.	0	bcgsc.ca	37	11	79700531	79700531	+	RNA	SNP	T	A	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	AATGGATGCAAAT	.	15	8	27	0	.	.
.	100131457	bcgsc.ca	37	11	85646289	85646289	+	RNA	SNP	C	T	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	ATTGTGCGGGAAC	.	23	7	26	0	.	.
.	0	bcgsc.ca	37	14	20137327	20137327	+	RNA	SNP	G	A	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	GATGCCGGGAGGC	.	165	22	244	0	.	.
PIEZO1	9780	bcgsc.ca	37	16	88808499	88808499	+	Silent	SNP	G	A	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	PIEZO1	NM_001142864	exon4	c.C288T	p.S96S	CCAGCGGCTGCCT	.	167	6	220	1	.	79
XAB2	56949	bcgsc.ca	37	19	7690922	7690922	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	XAB2,rectum,carcinoma,0,1	XAB2	NM_020196	exon6	c.C666A	p.H222Q	CAGCTCGTGCCAC	.	43	4	33	0	.	69
COMP	1311	bcgsc.ca	37	19	18901408	18901408	+	Silent	SNP	C	T	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	COMP	NM_000095	exon3	c.G180A	p.T60T	CAGGAACGTGATC	.	51	4	51	0	.	62
.	0	bcgsc.ca	37	X	100794005	100794005	+	RNA	SNP	C	A	A	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	AGGCTTCTTCTAA	.	20	4	19	0	.	.
.	0	bcgsc.ca	37	X	101428159	101428159	+	RNA	SNP	T	C	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	CTTCACTTGTGCT	.	147	5	172	0	.	.
RNU6-71	100873774	hgsc.bcm.edu	37	6	56141605	56141606	+	RNA	DNP	GT	GT	TG	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	GT	GT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.	.	.	.	.	.	TTTTTGTTTTTTT	.	27	6	21	0	.	.
CHEK2	11200	broad.mit.edu	37	22	29091840	29091841	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	TG	TG						Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	CHEK2,bladder,carcinoma,0,38	CHEK2	NM_001005735	exon12	c.C1245T	p.K416E	AATCTTGGAGTGC	.	84	4	86	2	.	438
PCDH15	65217	hgsc.bcm.edu	37	10	55566478	55566478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	PCDH15_ENST00000414778,NS,carcinoma,0,1	PCDH15_ENST00000414778	.	p.T1639K	.	.	TCAACTGTGCTTT	.	30	2	51	0	.	0
UHRF1	29128	hgsc.bcm.edu	37	19	4954679	4954679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y4-01A-11D-A417-09	TCGA-ZH-A8Y4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7c0d8315-be09-4965-8cf6-0659b15116af	88264350-4923-47c7-a831-5715420c907f	.,12	.	.	p.A672P	.	.	AGCAGGGCGGGTC	.	38	1	39	0	.	56