Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq NXPE3 91775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 101540335 101540335 + Missense_Mutation SNP G G T rs149452985 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_145037 exon8 c.G1217T p.R406L AATACCGCTGCCA . 26 11 27 0 0.000 . TSC1 7248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 135786449 135786449 + Missense_Mutation SNP A A C novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_000368 exon11 c.T1081G p.S361A CAGGAGAAGTTGG . 38 15 48 0 . . VPS26B 112936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 134113055 134113055 + Silent SNP G G C novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_052875 exon4 c.G588C p.L196L CTTCCTGCTGGTG . 34 9 52 0 . . SETD2 29072 hgsc.bcm.edu 37 3 47129614 47129614 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb SETD2_ENST00000409792,NS,carcinoma,0,2 SETD2_ENST00000409792 NM_014159 exon10 c.G5266A p.E1756K TGAGTTCCAGACA . 47 2 44 0 . 0 KCNN3 3782 hgsc.bcm.edu 37 1 154842333 154842333 + Silent SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001204087 exon1 c.G108A p.Q36Q CTGTTGCTGCTGC . 90 4 32 0 . . TXNDC16 57544 hgsc.bcm.edu;bcgsc.ca 37 14 52922163 52922163 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_020784 exon18 c.C1721A p.A574E AGACTTGCAGCAT . 49 4 38 0 . . USP6NL 9712 hgsc.bcm.edu 37 10 11505503 11505503 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001080491 exon14 c.C1475A p.A492D GAAGTGGCGTTGC . 50 4 44 0 . . KBTBD12 166348 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 3 127703108 127703108 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_207335 exon5 c.G1859T p.G620V AAGAAGGCAATGA . 36 4 30 0 . . LTN1 26046 hgsc.bcm.edu 37 21 30339206 30339206 + Missense_Mutation SNP T T A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb LTN1,colon,carcinoma,+1,6 LTN1 NM_015565 exon10 c.A1745T p.N582I TTACCATTTTTTT . 45 2 47 1 . +1 LIM2 3982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 51890594 51890594 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001161748 exon2 c.G104A p.G35E AAGGACCCTGACA . 23 8 20 0 . . MUC4 4585 hgsc.bcm.edu 37 3 195508450 195508450 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb .,7 . NM_018406 exon2 c.C10001T p.P3334L GAGGAAGGGCTGG . 20 2 18 2 . 1505 C3orf17 25871 hgsc.bcm.edu 37 3 112727076 112727076 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_015412 exon8 c.C1177A p.L393M TACCCAGAAAAAT . 63 3 99 0 . . PRMT3 10196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 20448337 20448337 + Missense_Mutation SNP A A G novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_005788 exon10 c.A919G p.T307A ACTATTACACTAA . 85 32 105 0 . . ATP13A3 79572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 194168696 194168696 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_024524 exon12 c.A1193G p.Y398C TTGGGATACAATA . 73 30 141 0 . . CENPC1 1060 hgsc.bcm.edu 37 4 68396538 68396538 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001812 exon5 c.G326A p.R109K CCTGATCTGTTTG . 76 4 77 0 . . ANKRD12 23253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 9254584 9254584 + Missense_Mutation SNP C C G novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_015208 exon9 c.C1319G p.S440C AGATTTCTACTTC . 34 26 141 0 . . ADRA2A 150 hgsc.bcm.edu 37 10 112838330 112838330 + Silent SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb ADRA2A,colon,carcinoma,0,1 ADRA2A NM_000681 exon1 c.C576T p.G192G GGGCGGCGGCGGC . 33 2 34 0 . 0 MIR548N 100302152 hgsc.bcm.edu 37 2 179363925 179363925 + RNA SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . TTTTTTCCAAAAT . 59 4 79 0 . . C12orf5 57103 hgsc.bcm.edu 37 12 4458991 4458991 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_020375 exon4 c.C199T p.H67Y ACCATGCATGGAA . 79 4 58 0 . . PINX1 54984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 10677706 10677706 + Silent SNP G G A rs368778352 alternate_allele TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_017884 exon6 c.C468T p.P156P TACCTCGGGAGTC . 65 58 90 0 . . UGT2B17 7367 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 69403575 69403575 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001077 exon6 c.C1361T p.P454L TTCACCGGTTGAT . 58 48 59 0 . . EP400 57634 hgsc.bcm.edu 37 12 132547144 132547144 + Silent SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb EP400,NS,carcinoma,0,1 EP400 NM_015409 exon47 c.G8232A p.Q2744Q ACAGCAGCAGCAG . 12 3 34 1 . 0 RNR2 6053 hgsc.bcm.edu;broad.mit.edu 37 MT 2681 2681 + RNA SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . GAAATTGACCTGC . 1316 83 1862 0 . . DOCK10 55619 hgsc.bcm.edu 37 2 225637968 225637968 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb DOCK10_ENST00000373702,NS,carcinoma,0,2 DOCK10_ENST00000373702 NM_014689 exon53 c.C6110A p.S2037Y TTCTTGGACATCT . 33 2 37 0 . 0 CUBN 8029 hgsc.bcm.edu 37 10 17026203 17026203 + Nonsense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001081 exon30 c.C4426T p.Q1476X AGACCTGCATGGG . 72 4 39 0 . . PIP4K2B 8396 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 36925956 36925956 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_003559 exon10 c.C1239A p.N413K CAGGATGTTGGAC . 42 4 67 0 . . NDUFA9 4704 hgsc.bcm.edu;bcgsc.ca 37 12 4763523 4763523 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_005002 exon2 c.G115T p.A39S CATCATGCCCTCA . 72 4 48 0 . . LAMA5 3911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 60887332 60887332 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_005560 exon69 c.G9401T p.R3134L GCCAGGCGAAGGA . 22 7 15 0 . . MAGEL2 54551 hgsc.bcm.edu 37 15 23892486 23892486 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_019066 exon1 c.C404A p.P135H GCTCCGGGAGCTG . 70 34 94 0 . . MAPKAPK2 9261 hgsc.bcm.edu 37 1 206858675 206858675 + Missense_Mutation SNP A A C novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb .,2 . NM_004759 exon1 c.A101C p.Q34P CGGCGCAGCCGCC . 21 2 12 0 . 45 CLIP4 79745 hgsc.bcm.edu 37 2 29404628 29404628 + Nonsense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_024692 exon16 c.G1987T p.G663X GCCAAGGGAAAAA . 20 3 38 0 . . MAPKBP1 23005 hgsc.bcm.edu 37 15 42113096 42113096 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb MAPKBP1,colon,carcinoma,0,1 MAPKBP1 NM_001128608 exon24 c.C2566T p.R856C AGAGGGCGCTGGG . 24 2 22 0 . 0 GNPDA1 10007 hgsc.bcm.edu 37 5 141384672 141384672 + Missense_Mutation SNP G G C rs11557798 alternate_allele TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_005471 exon5 c.C419G p.P140R CCATCAGGGCCGA . 19 9 8 0 . . PRDM10 56980 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 11 129784863 129784863 + Silent SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_020228 exon18 c.C2589A p.L863L GTTGGAGAGCTGG . 19 4 22 0 . . USH2A 7399 hgsc.bcm.edu 37 1 216591858 216591858 + Nonsense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_007123 exon3 c.C649T p.Q217X TCACCTGCACACT . 92 4 51 0 . . ZNF30 90075 hgsc.bcm.edu 37 19 35434870 35434870 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb ZNF30,colon,carcinoma,0,1 ZNF30 NM_001099438 exon5 c.C1003T p.H335Y ACTCGACATCAGA . 35 2 41 0 . 0 FGFR1OP 11116 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 167447400 167447400 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_007045 exon12 c.G1066A p.G356S AGTATTGGTGAAG . 33 26 67 0 . . ZNF195 7748 hgsc.bcm.edu;bcgsc.ca 37 11 3381489 3381489 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001130520 exon6 c.G749A p.G250D GATTTGCCACATT . 51 4 60 0 . . ABCA13 154664 hgsc.bcm.edu 37 7 48318114 48318114 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb ABCA13_ENST00000435803,NS,carcinoma,0,2 ABCA13_ENST00000435803 NM_152701 exon18 c.G7323T p.L2441F TGCTTTGTATCCT . 32 2 56 0 . 0 VENTX 27287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 135053262 135053262 + Silent SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_014468 exon2 c.C324T p.G108G GGAGGGCGTCTTC . 33 11 26 0 . . MAB21L1 4081 hgsc.bcm.edu;ucsc.edu 37 13 36048562 36048562 + RNA SNP T T G novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . GCAATATTTGAAA . 123 56 149 0 . . CENPF 1063 hgsc.bcm.edu;bcgsc.ca 37 1 214818019 214818019 + Silent SNP C C A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb CENPF,right_lower_lobe,carcinoma,0,1 CENPF NM_016343 exon13 c.C5106A p.L1702L GGACCTCAATCTA . 88 4 41 0 . 0 IFT122 55764 hgsc.bcm.edu 37 3 129218838 129218838 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb IFT122,colon,carcinoma,0,3 IFT122 NM_052985 exon20 c.G2455T p.V819L GCCGCCGTGGAGA . 45 3 51 0 . 0 TP53 7157 hgsc.bcm.edu 37 17 7579316 7579316 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb TP53_ENST00000413465,NS,carcinoma,+1,4 TP53_ENST00000413465 NM_000546 exon4 c.G371A p.C124Y ACCGTGCAAGTCA . 47 2 94 0 . +1 ARHGAP19 84986 hgsc.bcm.edu 37 10 99024582 99024582 + Splice_Site SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb ARHGAP19_ENST00000358531,NS,carcinoma,0,1 ARHGAP19_ENST00000358531 NM_032900 exon4 c.403+1G>A . GTCTTACTTTTGT . 50 2 35 0 . 0 DMRTA1 63951 hgsc.bcm.edu 37 9 22451584 22451584 + Nonsense_Mutation SNP G G T rs150162716 alternate_allele TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb DMRTA1,arm,malignant_melanoma,0,1 DMRTA1 NM_022160 exon2 c.G1189T p.G397X CTTGCTGGAATTG . 49 3 57 0 . 0 WRAP53 55135 hgsc.bcm.edu;broad.mit.edu 37 17 7606344 7606344 + Silent SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb WRAP53,NS,carcinoma,0,1 WRAP53 NM_001143991 exon10 c.C1302T p.S434S CACGAGCGGGGCT . 23 3 16 0 . 0 ARID2 196528 hgsc.bcm.edu 37 12 46245336 46245336 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb ARID2,NS,carcinoma,0,1 ARID2 NM_152641 exon15 c.C3430T p.P1144S ACTGTGCCCATTT . 33 2 43 0 . 0 SLC5A12 159963 hgsc.bcm.edu;bcgsc.ca 37 11 26725205 26725205 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_178498 exon6 c.C694A p.P232T TGAGAGGATCTAC . 56 4 60 0 . . ND4 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 11988 11988 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . ENST00000361381 exon1 c.T1229C p.M410T TCTACATATTTAC . 78 73 25 0 . . U2AF1L4 199746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 36233568 36233568 + Silent SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_144987 exon6 c.G540A p.Q180Q GAGGTCCTGCCAG . 41 16 31 0 . . ITGAV 3685 hgsc.bcm.edu 37 2 187511445 187511445 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb ITGAV,caecum,carcinoma,0,1 ITGAV NM_002210 exon13 c.G1192T p.D398Y GGTGAAGATAAAA . 26 2 25 0 . 0 ACTN2 88 hgsc.bcm.edu 37 1 236882229 236882229 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001103 exon3 c.C277T p.R93W AAAATGCGGTTCC . 87 4 51 0 . . FOXF1 2294 hgsc.bcm.edu 37 16 86544554 86544554 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb FOXF1_ENST00000262426,NS,carcinoma,0,2 FOXF1_ENST00000262426 NM_001451 exon1 c.G379A p.A127T GACCCGGCCAGCG . 49 3 40 0 . 0 FREM2 341640 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 13 39454561 39454561 + Silent SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_207361 exon24 c.C9147T p.S3049S CAAGAGCCGGAAG . 29 4 41 0 . . SESTD1 91404 hgsc.bcm.edu;bcgsc.ca 37 2 180016103 180016103 + Missense_Mutation SNP C C T rs377062896 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_178123 exon6 c.G385A p.A129T TGTTGGCGGACAC . 59 5 108 0 . . PRDM1 639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 106553700 106553700 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001198 exon5 c.C1665A p.N555K AAGAAACATGACC . 22 17 25 0 . . CLRN1 7401 hgsc.bcm.edu 37 3 150690293 150690293 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb CLRN1,NS,carcinoma,0,1 CLRN1 NM_001256819 exon1 c.G203A p.G68E CCCTCTCCGTGGA . 28 2 24 0 . 0 DKKL1 27120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 49878126 49878126 + Silent SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_014419 exon5 c.C570T p.L190L CTGGCTCAGCGAG . 29 11 49 0 . . SALL1 6299 hgsc.bcm.edu 37 16 51173912 51173912 + Silent SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb SALL1,NS,carcinoma,0,2 SALL1 NM_002968 exon2 c.C2221A p.R741R AAGCCCGGCCACA . 41 2 40 0 . 0 PASK 23178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 242051786 242051786 + Silent SNP G G A rs200314136 bycluster TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001252119 exon15 c.C3423T p.I1141I GATCACGATGTTC . 22 8 22 0 0.001 . PKD1 5310 hgsc.bcm.edu 37 16 2160404 2160404 + Silent SNP G G A rs376144237 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_000296 exon15 c.C4764T p.C1588C GGGCGTGCAGCGG . 52 4 61 0 . . RNR2 6053 hgsc.bcm.edu;broad.mit.edu 37 MT 1964 1964 + RNA SNP T T C novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . GCAAAATAGTGGG . 89 25 14 0 . . GIGYF2 26058 hgsc.bcm.edu 37 2 233708929 233708929 + Silent SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb GIGYF2_ENST00000409451,NS,carcinoma,0,2 GIGYF2_ENST00000409451 NM_001103147 exon26 c.G3126A p.Q1042Q GCAGCAGCAACAC . 26 2 26 0 . 0 MLL 4297 hgsc.bcm.edu 37 11 118344932 118344932 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001197104 exon3 c.G3058T p.D1020Y ATGACTGACAAGA . 35 3 29 0 . . CACNA1B 774 hgsc.bcm.edu 37 9 140773613 140773613 + Splice_Site SNP T T A rs201604190 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb CACNA1B,colon,carcinoma,0,8 CACNA1B NM_001243812 exon2 c.390+2T>A . GGCTGGTGAGTGC . 27 4 39 2 . 0 OR6P1 128366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 158533186 158533186 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001160325 exon1 c.A209G p.E70G CATAGCTCCAGGA . 138 77 54 0 . . MANBA 4126 hgsc.bcm.edu 37 4 103560932 103560932 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb MANBA,colon,carcinoma,0,1 MANBA NM_005908 exon14 c.C1952T p.T651M CCCATCGTGTGCC . 33 2 29 0 . 0 TMEM44 93109 hgsc.bcm.edu 37 3 194337847 194337847 + Missense_Mutation SNP C C T rs369611318 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001166305 exon7 c.G905A p.R302H GCCGCACGGCCGA . 75 4 89 0 . . C18orf25 147339 hgsc.bcm.edu 37 18 43833705 43833705 + Missense_Mutation SNP G G C rs370787556 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb .,1 . NM_145055 exon4 c.G941C p.G314A CATCTGGCAATGC . 101 5 90 1 . 27 COX1 5742 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 6510 6510 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . ENST00000361624 exon1 c.G607A p.A203T GTCCTAGCTGCTG . 82 77 22 0 . . PABPC3 5042 hgsc.bcm.edu 37 13 25671456 25671456 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb PABPC3,colon,carcinoma,-1,1 PABPC3 NM_030979 exon1 c.C1120T p.R374C GAAGAGCGCCAGG . 39 2 74 0 . -1 NUP210P1 255330 hgsc.bcm.edu 37 3 126385744 126385744 + RNA SNP C C A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . AACCAGCACTGTG . 30 10 24 0 . . ZNF85 7639 hgsc.bcm.edu 37 19 21132556 21132556 + Silent SNP C C A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb ZNF85,NS,carcinoma,0,1 ZNF85 NM_001256171 exon5 c.C1326A p.T442T TTCAACCCTTACT . 39 3 61 0 . 0 PTPRS 5802 hgsc.bcm.edu 37 19 5218452 5218452 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb PTPRS,colon,carcinoma,+1,1 PTPRS NM_002850 exon25 c.C4027A p.R1343S TAATGCGTCTCAT . 32 2 39 1 . +1 CACNA1G 8913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 48684279 48684279 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001256360 exon24 c.G4441A p.V1481I CTGTTCGTTTTGG . 33 9 28 0 . . PDE9A 5152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 44189140 44189140 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_002606 exon17 c.G1465A p.D489N CAGAGCGACCGTG . 28 15 40 0 . . DPY19L3 147991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 32930122 32930122 + Missense_Mutation SNP A A G novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001172774 exon7 c.A701G p.N234S GACCAAACTTACA . 80 11 118 0 . . PGGT1B 5229 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 5 114566719 114566719 + Splice_Site SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_005023 exon7 c.613-1G>A . ATAGGACTGAAAA . 26 4 36 0 . . ROCK1P1 727758 hgsc.bcm.edu 37 18 109926 109926 + RNA SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . ACTGATCACCCAG . 83 7 17 0 . . PLA2G4F 255189 hgsc.bcm.edu 37 15 42446614 42446614 + Missense_Mutation SNP G G T rs142310375 alternate_allele TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb PLA2G4F,right_lower_lobe,carcinoma,0,1 PLA2G4F NM_213600 exon3 c.C227A p.A76E GGGGACGCCGTGG . 26 2 31 0 . 0 ELOVL7 79993 hgsc.bcm.edu 37 5 60060157 60060157 + Silent SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb ELOVL7,NS,carcinoma,0,1 ELOVL7 NM_001104558 exon6 c.C396A p.I132I AAAAAAGATCTGA . 44 2 73 0 . 0 ANO7 50636 hgsc.bcm.edu;ucsc.edu 37 2 242135132 242135132 + Missense_Mutation SNP G G A rs149691575 bycluster TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_001001891 exon4 c.G343A p.V115I GTCCTCGTTTGGG . 20 11 11 0 0.000 . ZBTB7A 51341 hgsc.bcm.edu 37 19 4053996 4053996 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb ZBTB7A,colon,carcinoma,0,1 ZBTB7A NM_015898 exon2 c.G1235A p.C412Y ATGTTGCACTCGT . 34 2 36 0 . 0 SMAP1 60682 hgsc.bcm.edu 37 6 71567931 71567931 + Missense_Mutation SNP A A G novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb SMAP1_ENST00000370455,NS,carcinoma,0,2 SMAP1_ENST00000370455 NM_001044305 exon10 c.A1268G p.Q423R TCTCACAGGTAGG . 50 2 63 0 . 0 AHNAK2 113146 hgsc.bcm.edu 37 14 105415064 105415064 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . NM_138420 exon7 c.C6724T p.P2242S AACTGGGCATCTG . 51 4 79 0 . . ARFGEF2 10564 hgsc.bcm.edu 37 20 47569405 47569405 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb ARFGEF2,NS,carcinoma,-1,1 ARFGEF2 NM_006420 exon5 c.G587A p.R196H TCACCCGCATGGA . 62 3 25 0 . -1 RHBDL3 162494 hgsc.bcm.edu 37 17 30621346 30621346 + Missense_Mutation SNP G G T rs138890553 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb RHBDL3,NS,carcinoma,0,1 RHBDL3 NM_138328 exon5 c.G553T p.G185C TCACTAGGTCAAT . 50 2 55 0 0.000 0 CR1 1378 broad.mit.edu 37 1 207787753 207787753 + Nonsense_Mutation SNP C C T rs55749440 bycluster TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb CR1_ENST00000367049,NS,carcinoma,0,15 CR1 NM_000651 exon40 c.C6580T p.R2194X AGGTTCCGATTAA . 223 8 153 1 . 354 LRRC71 149499 broad.mit.edu 37 1 156893876 156893876 + Frame_Shift_Del DEL A A - novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . LRRC71 NM_144702 exon2 c.296delA p.E99fs TGTCGGAAAAGGC . 187 6 47 0 . 33 ART5 116969 broad.mit.edu;ucsc.edu 37 11 3661209 3661209 + Nonsense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . ART5 NM_001079536 exon3 c.C450A p.C150X CCTGCTGCAGCCC . 52 9 82 1 . 38 ADAM21P1 0 broad.mit.edu 37 14 70714144 70714144 + RNA SNP A A G rs3751522 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . CTTCTTAACCCTC . 21 5 47 1 . . WDR25 79446 broad.mit.edu;bcgsc.ca 37 14 100847912 100847916 + Frame_Shift_Del DEL GTCTG GTCTG - novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . WDR25 NM_001161476 exon2 c.651_655del p.217_219del GGGAGTGTCTGAG . 18 8 66 0 . 37 WDR25 79446 broad.mit.edu;bcgsc.ca 37 14 100847918 100847924 + Frame_Shift_Del DEL GTTTATT GTTTATT - novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb WDR25,colon,carcinoma,+2,2 WDR25 NM_001161476 exon2 c.657_663del p.219_221del GTCTGAGTTTATT . 15 9 65 0 . 37 KIAA1024 23251 broad.mit.edu 37 15 79749365 79749365 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . KIAA1024 NM_015206 exon2 c.G876T p.K292N TCGAAAGGAACCC . 32 3 32 0 . 146 C16orf90 0 broad.mit.edu 37 16 3546141 3546141 + RNA DEL A A - rs200618809 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . C16orf90 . . . . CGTCTCAAAAAAA . 7 1 7 0 . 16 . 0 broad.mit.edu 37 16 32118199 32118200 + RNA DEL AT AT - rs144117991 bycluster TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . AATAACATAAACC . 10 3 4 0 . . TTC25 83538 broad.mit.edu 37 17 40101598 40101598 + RNA DEL A A - rs35481109 bycluster TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . TTC25 . . . . CTCTACAAAAAAA . 6 1 7 0 -|1.000;|0.000 37 LPIN2 9663 broad.mit.edu 37 18 2937759 2937759 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . LPIN2 NM_014646 exon7 c.G1099T p.A367S AGGCTGCGTTGGG . 22 3 49 0 . 75 FFAR3 2865 broad.mit.edu;bcgsc.ca 37 19 35850647 35850647 + Silent SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . FFAR3 NM_005304 exon2 c.C855T p.A285A CCAAGCCGACTTT . 91 28 113 1 . 40 NLRP8 126205 broad.mit.edu 37 19 56467321 56467321 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . NLRP8 NM_176811 exon3 c.G1897T p.V633F AAAGTTGTCTTGA . 57 3 57 1 . 225 ZNF649 65251 broad.mit.edu 37 19 52395140 52395140 + Missense_Mutation SNP T T G novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . ZNF649 NM_023074 exon5 c.A249C p.K83N ATCAGCTTTCTCA . 34 3 35 0 . 72 BAGE2 85319 broad.mit.edu 37 21 11048049 11048049 + RNA DEL A A - rs147865622 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . GTCACTAAACAAC . 7 3 4 0 . . FLJ22763 0 broad.mit.edu 37 3 108868962 108868962 + RNA DEL A A - rs57306274 bycluster TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . AGAACTAAAAAAA . 15 5 5 0 . . VPRBP 9730 broad.mit.edu;bcgsc.ca 37 3 51449832 51449832 + Splice_Site SNP C C G novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . VPRBP NM_001171904 exon22 c.4050+1G>C . CACTGACCTGGTC . 14 10 24 0 . 107 . 0 broad.mit.edu 37 4 190805401 190805401 + RNA DEL T T - rs60889582 bycluster TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . TAATAATTTTAGA . 8 2 4 0 T|0.500;-|0.500 . CENPE 1062 broad.mit.edu 37 4 104032141 104032141 + Missense_Mutation SNP G G T rs373836132 alternate_allele TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . CENPE NM_001813 exon47 c.C7568A p.P2523H TTTGAAGGCTGAG . 45 3 43 0 . 253 MARCH6 10299 broad.mit.edu 37 5 10415711 10415711 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . MARCH6 NM_005885 exon21 c.C2078T p.T693M CTGTGACGGTGAT . 37 3 55 0 . 89 LINC00340 0 broad.mit.edu 37 6 22086023 22086023 + RNA DEL A A - novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . GCATGCAAAACCT . 5 1 5 0 . . ADCK5 203054 broad.mit.edu 37 8 145617535 145617549 + Splice_Site DEL GGGGGTGCAAGGTGA GGGGGTGCAAGGTGA - rs11270020 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . ADCK5 NM_174922 exon12 c.1257_1267del p.419_423del CGCACTGGGGGTG . 7 2 4 0 . 36 LRRC2 79442 ucsc.edu;bcgsc.ca 37 3 46563075 46563075 + Silent SNP G G T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb LRRC2,NS,carcinoma,+1,3 LRRC2 NM_024512 exon8 c.C1003A p.R335R GATCCCGTTCACT . 38 4 40 0 . 37 SLC3A2 6520 ucsc.edu;bcgsc.ca 37 11 62648550 62648550 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . SLC3A2 NM_001012662 exon4 c.C361T p.P121S TTAGAGCCCGAGA . 40 4 47 0 . 55 ANO1 55107 ucsc.edu;bcgsc.ca 37 11 69950201 69950201 + Missense_Mutation SNP A A T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 A A Unknown Untested Somatic WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . ANO1 NM_018043 exon4 c.A637T p.R213W GAGCACAGGCCCC . 15 4 27 0 . 156 SLC7A10 56301 ucsc.edu 37 19 33701909 33701909 + Silent SNP C C T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . SLC7A10 . . . . GCCCAGCAGCCCC . 35 4 23 0 . 43 RPAP2 79871 bcgsc.ca 37 1 92789386 92789386 + Missense_Mutation SNP C A A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . RPAP2 NM_024813 exon8 c.C909A p.S303R AAATAGCACTTTG . 20 3 53 0 . 48 . 28891 bcgsc.ca 37 2 90248911 90248911 + Missense_Mutation SNP G T T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . CAGTCAGGACACA . 64 27 84 0 . . MUC12 10071 bcgsc.ca 37 7 100643832 100643832 + Missense_Mutation SNP C G G rs57050353 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . MUC12 NM_001164462 exon2 c.C9988G p.H3330D ACCTACCACAGCA . 537 28 550 33 . 140 MUC12 10071 bcgsc.ca 37 7 100643876 100643876 + Silent SNP C T T rs55930823 TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . MUC12 NM_001164462 exon2 c.C10032T p.S3344S TGAAAGCGACACA . 502 26 485 27 . 140 . 0 bcgsc.ca 37 8 55667427 55667427 + RNA SNP G A A novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . TGTCTCGGATTCA . 75 42 72 2 . . . 79515 bcgsc.ca 37 11 123880424 123880424 + RNA SNP G T T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . CTGGACGCCCCAC . 27 11 40 0 . . . 0 bcgsc.ca 37 12 6588416 6588416 + RNA SNP T C C novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . TGGATGTCTAAGA . 32 9 21 0 . . SOAT2 8435 bcgsc.ca 37 12 53509269 53509269 + Missense_Mutation SNP C T T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . SOAT2 NM_003578 exon6 c.C539T p.A180V TGTTGGCGCCGTA . 15 3 18 0 . 44 . 144 bcgsc.ca 37 13 111591134 111591134 + RNA SNP G T T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . GATGTGGAAAGTA . 28 13 18 0 . . . 100129631 bcgsc.ca 37 16 32859392 32859392 + RNA SNP C T T novel TCGA-ZH-A8Y5-01A-11D-A417-09 TCGA-ZH-A8Y5-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 85df6bba-88a3-4a2a-9233-157b59947c23 14be0260-55ec-4801-b29f-15ddeb9b79bb . . . . . . CATCTCCAAGGAC . 122 22 137 0 . .