Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
GRID1	2894	hgsc.bcm.edu	37	10	87407113	87407113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	GRID1,colon,carcinoma,0,1	GRID1	NM_017551	exon13	c.G2039A	p.G680D	ACAGTGCCATAAG	.	42	3	46	0	.	0
OR2T33	391195	hgsc.bcm.edu	37	1	248436680	248436680	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	OR2T33,NS,carcinoma,0,1	OR2T33	NM_001004695	exon1	c.G437C	p.C146S	AGCCAACACGACA	.	73	4	76	0	.	0
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	5604050	5604050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001102654	exon2	c.G709T	p.V237F	ACCTACGTCCGAG	.	63	7	47	0	.	.
TRPC4	7223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	38357312	38357312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001135958	exon2	c.G159C	p.E53D	AGCTTCCTCTAGG	.	52	7	55	0	.	.
MIOS	54468	hgsc.bcm.edu	37	7	7625410	7625410	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_019005	exon7	c.G1792T	p.E598X	ACAAGTGAAACAG	.	77	4	60	0	.	.
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	49823430	49823430	+	Missense_Mutation	SNP	G	G	A	rs377503772		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	ZNF423_ENST00000262383,colon,carcinoma,0,2	ZNF423_ENST00000262383	NM_015069	exon2	c.C44T	p.S15L	GCCAGCGAGAAGT	.	59	7	55	0	.	0
IQSEC1	9922	hgsc.bcm.edu	37	3	12942851	12942851	+	Splice_Site	SNP	C	C	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.,1	.	NM_001134382	exon15	c.2976+1G>C	.	GGGTGGCCAGGGC	.	13	5	9	1	.	88
TCHH	7062	hgsc.bcm.edu	37	1	152085490	152085490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	TCHH,colon,carcinoma,0,1	TCHH	NM_007113	exon3	c.G203A	p.R68H	TCGACACGCCCAT	.	35	2	44	0	.	0
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu	37	21	43279219	43279219	+	Silent	SNP	T	T	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_022115	exon10	c.A1150C	p.R384R	GCCGCCTCACCAG	.	44	4	31	0	.	.
BBS7	55212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	122775917	122775917	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_018190	exon7	c.G660C	p.Q220H	AGTAATCTGTATA	.	77	8	63	0	.	.
RYR2	6262	hgsc.bcm.edu	37	1	237732451	237732451	+	Silent	SNP	C	C	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	RYR2,NS,carcinoma,0,1	RYR2	NM_001035	exon29	c.C3430A	p.R1144R	GCCCAGCGGTGGC	.	59	3	49	0	.	0
NCOA6	23054	hgsc.bcm.edu	37	20	33345756	33345756	+	Silent	SNP	T	T	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	NCOA6,bladder,carcinoma,0,2	NCOA6	NM_014071	exon7	c.A795G	p.Q265Q	TTGTTGTTGCTGC	.	37	2	34	1	.	0
STK36	27148	hgsc.bcm.edu;bcgsc.ca	37	2	219561301	219561301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_015690	exon22	c.C2563T	p.L855F	CTTATCCTTCTGT	.	82	4	62	0	.	.
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56699023	56699023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_198393	exon5	c.G542A	p.G181D	ACGAGGCCCCCAC	.	42	5	30	0	.	.
TMEM116	89894	hgsc.bcm.edu;broad.mit.edu	37	12	112369579	112369579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	TMEM116,colon,carcinoma,0,1	TMEM116	NM_001193531	exon11	c.C860T	p.T287M	TGCTGCGTCCAGC	.	57	3	49	0	.	0
MCM3AP	8888	hgsc.bcm.edu;bcgsc.ca	37	21	47690365	47690365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_003906	exon9	c.C2578A	p.Q860K	CTGACTGGACCAG	.	102	4	83	0	.	.
SPHKAP	80309	hgsc.bcm.edu	37	2	228996763	228996763	+	Missense_Mutation	SNP	G	G	T	rs141195352	alternate_allele	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	SPHKAP_ENST00000392056,NS,carcinoma,+1,2	SPHKAP_ENST00000392056	NM_030623	exon2	c.C71A	p.P24Q	TGCTGCGGTTCCA	.	52	3	59	0	.	+1
DDB2	1643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47236765	47236765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_000107	exon1	c.T78G	p.S26R	CAGGAGTCCCCTG	.	64	8	34	0	.	.
KIAA1109	84162	hgsc.bcm.edu;bcgsc.ca	37	4	123245634	123245634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_015312	exon62	c.G10847T	p.R3616L	ACAGCCGATCAAA	.	87	4	90	0	.	.
DGKA	1606	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56335859	56335859	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_201554	exon16	c.A1328C	p.E443A	TTCTAGAGACCAT	.	58	5	47	0	.	.
OR10AG1	282770	hgsc.bcm.edu	37	11	55735485	55735485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	OR10AG1,NS,carcinoma,0,1	OR10AG1	NM_001005491	exon1	c.G455A	p.C152Y	ATTTGGCATGTTT	.	74	3	52	0	.	0
ADAM21	8747	hgsc.bcm.edu	37	14	70924559	70924559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	ADAM21,NS,NS,0,1	ADAM21	NM_003813	exon2	c.G343A	p.V115M	GGTTACGTGGAGG	.	47	2	30	0	.	0
RTN4RL2	349667	hgsc.bcm.edu	37	11	57243730	57243730	+	Silent	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_178570	exon3	c.C609T	p.G203G	CCTGGGCAGCCTG	.	40	4	20	0	.	.
MIR1256	100302155	hgsc.bcm.edu	37	10	74283493	74283493	+	RNA	SNP	T	T	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	AATGAATAAATTT	.	70	10	62	0	.	.
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	21842369	21842369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_004061	exon8	c.G715T	p.A239S	CCTTGGCTTGGAT	.	89	8	75	0	.	.
SPPL2C	162540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43923030	43923030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_175882	exon1	c.C758T	p.P253L	TCACGCCGGCCAT	.	41	9	30	0	.	.
UBAP2	55833	hgsc.bcm.edu	37	9	33989030	33989030	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	UBAP2,NS,malignant_melanoma,0,1	UBAP2	NM_018449	exon5	c.C383A	p.S128X	CGACTCGATTCTT	.	49	3	48	0	.	0
LURAP1	541468	hgsc.bcm.edu	37	1	46685389	46685389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	C1orf190,NS,carcinoma,0,1	C1orf190	NM_001013615	exon2	c.G217T	p.D73Y	GCCATCGATGTGA	.	46	2	25	0	.	0
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	rs121913227	bycluster	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	BRAF,NS,adenoma,0,19815	BRAF	NM_004333	exon15	c.T1799A	p.V600E	GATTTCACTGTAG	.	102	17	90	0	.	0
FRG1	2483	hgsc.bcm.edu	37	4	190884267	190884267	+	Missense_Mutation	SNP	G	G	A	rs373037319		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	FRG1,middle_lobe,carcinoma,0,1	FRG1	NM_004477	exon9	c.G760A	p.D254N	AAAGCCGACAGAT	.	67	6	49	2	.	0
RTTN	25914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	67742716	67742716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_173630	exon33	c.C4436T	p.A1479V	AAAAGAGCCTGAA	.	47	7	40	0	.	.
EPB41L5	57669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	120861693	120861693	+	Silent	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001184939	exon17	c.C1395T	p.A465A	AAGGGCCTTGCCC	.	49	8	52	0	.	.
PKLR	5313	hgsc.bcm.edu;bcgsc.ca	37	1	155271160	155271160	+	Silent	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_000298	exon1	c.C27A	p.S9S	CTGCAGGGATGAT	.	47	4	29	0	.	.
RANBP2	5903	hgsc.bcm.edu	37	2	109379749	109379749	+	Silent	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	RANBP2_ENST00000283195,rectum,carcinoma,0,2	RANBP2_ENST00000283195	NM_006267	exon20	c.G2754A	p.P918P	CTATCCGCAACAG	.	15	2	13	0	.	0
TOP1P2	7152	hgsc.bcm.edu	37	22	25161763	25161763	+	RNA	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	AAAAAAGGAAAAA	.	59	5	28	0	.	.
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52200419	52200419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_014191	exon27	c.C5149T	p.R1717C	CTAAACCGCCCCC	.	48	8	49	0	.	.
MIR629	693214	hgsc.bcm.edu	37	15	70371803	70371803	+	RNA	SNP	A	A	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	TGGGAAAGGGACA	.	22	4	17	0	.	.
GRIK2	2898	hgsc.bcm.edu;broad.mit.edu	37	6	102074369	102074369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_021956	exon3	c.G398A	p.R133H	AGACCCGCTGGAA	.	44	4	16	0	.	.
SLC19A3	80704	hgsc.bcm.edu	37	2	228564115	228564115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	SLC19A3,NS,carcinoma,0,1	SLC19A3	NM_025243	exon3	c.A316G	p.M106V	CCTGCATGGTCTT	.	60	2	45	0	.	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1065137	1065137	+	Silent	SNP	G	G	A	rs367736927	bycluster	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_019112	exon46	c.G6252A	p.E2084E	CGTGGAGGACTTT	.	42	7	28	0	.	.
ZFAT	57623	hgsc.bcm.edu	37	8	135614580	135614580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	ZFAT_ENST00000377838,NS,carcinoma,0,2	ZFAT_ENST00000377838	NM_020863	exon6	c.C1382T	p.A461V	CAGACGGCACAGA	.	40	2	26	0	.	0
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140735956	140735956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_018917	exon1	c.A1189G	p.T397A	GAAAAGACCTATG	.	43	9	38	0	.	.
ZNF736	728927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	63809199	63809199	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001170905	exon5	c.A958C	p.K320Q	TGTGGAAAAGCTT	.	76	11	53	0	.	.
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73682297	73682297	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_015120	exon9	c.A7546C	p.M2516L	TGGAATATGAAGT	.	71	9	56	0	.	.
LY75	4065	hgsc.bcm.edu	37	2	160731975	160731975	+	Missense_Mutation	SNP	C	C	A	rs371478963	alternate_allele	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	LY75,NS,carcinoma,0,1	LY75	NM_002349	exon12	c.G1954T	p.A652S	GACTTGCGGGGAA	.	45	2	47	0	.	0
CORIN	10699	hgsc.bcm.edu	37	4	47625641	47625641	+	Silent	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	CORIN,medulla,primitive_neuroectodermal_tumour-medulloblastoma,0,1	CORIN	NM_006587	exon19	c.C2487A	p.G829G	GACACAGCCACAG	.	65	3	34	0	.	0
RHOBTB1	9886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	62648582	62648582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_014836	exon6	c.C844G	p.R282G	AAATTCGATGTGC	.	58	6	32	0	.	.
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128861520	128861520	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_020120	exon3	c.A209C	p.E70A	TAGCAGAAGACAG	.	229	29	138	0	.	.
CIT	11113	hgsc.bcm.edu;ucsc.edu	37	12	120139737	120139737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001206999	exon42	c.C5331A	p.S1777R	GATACAGCTGCAG	.	41	4	33	0	.	.
MTUS1	57509	hgsc.bcm.edu	37	8	17513428	17513428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001001924	exon9	c.C3052A	p.L1018I	CCCGAAGCTTTTC	.	86	4	63	0	.	.
OR5I1	10798	hgsc.bcm.edu	37	11	55703506	55703506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	OR5I1,colon,carcinoma,0,2	OR5I1	NM_006637	exon1	c.G371A	p.R124H	ACATAGCGATCAT	.	38	3	37	0	.	0
ZNF268	10795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	133780814	133780814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001165881	exon6	c.A2542G	p.K848E	AGTGGGAAATTAC	.	46	7	47	0	.	.
ABCG2	9429	hgsc.bcm.edu	37	4	89060947	89060947	+	Silent	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_004827	exon2	c.C201A	p.I67I	ATACTTGATATTC	.	89	4	70	0	.	.
MIR147B	100126311	hgsc.bcm.edu	37	15	45725249	45725249	+	RNA	SNP	A	A	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	TACTCTATAAATC	.	75	7	43	0	.	.
TMEM37	140738	hgsc.bcm.edu	37	2	120194651	120194651	+	Missense_Mutation	SNP	A	A	C	rs201433053	bycluster	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.,15	.	NM_183240	exon2	c.A208C	p.T70P	AACCAGACGATCT	.	24	0	21	0	.	40
OR2T33	391195	hgsc.bcm.edu	37	1	248436682	248436682	+	Silent	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	OR2T33,NS,carcinoma,0,2	OR2T33	NM_001004695	exon1	c.G435A	p.S145S	CCAACACGACATG	.	74	4	77	1	.	0
SLC12A2	6558	hgsc.bcm.edu	37	5	127522246	127522246	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001046	exon27	c.G3562T	p.E1188X	TGGTTAGAAGCTC	.	80	4	62	0	.	.
NPTN	27020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73889442	73889442	+	Silent	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	NPTN,caecum,carcinoma,0,1	NPTN	NM_001161363	exon2	c.C360T	p.N120N	GGGGTCGTTGCTG	.	47	10	47	0	.	0
SYNDIG1	79953	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	24524207	24524207	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_024893	exon2	c.G474C	p.E158D	CCAGGAGCTGGAG	.	39	4	30	0	.	.
ARHGAP28	79822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	6873450	6873450	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001010000	exon7	c.G520C	p.G174R	GAAGCAGGAGATC	.	73	9	43	0	.	.
TUBB	203068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30691487	30691487	+	Silent	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_178014	exon4	c.G648A	p.K216K	TCTGAAGCTGACC	.	52	5	40	0	.	.
RYR1	6261	hgsc.bcm.edu	37	19	39016093	39016093	+	Missense_Mutation	SNP	C	C	T	rs374061380		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	RYR1,colon,carcinoma,0,1	RYR1	NM_000540	exon71	c.C10577T	p.A3526V	TGTGTGCGCCCAC	.	47	2	26	0	.	0
NBR2	10230	hgsc.bcm.edu	37	17	41283415	41283415	+	RNA	SNP	T	T	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	TAATAATAAAAAC	.	38	6	20	0	.	.
DAXX	1616	hgsc.bcm.edu	37	6	33288173	33288173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	DAXX,NS,carcinoma,0,1	DAXX	NM_001141970	exon4	c.C1271A	p.S424Y	TCCAAGGAGGCTT	.	47	2	31	0	.	0
MUC5B	727897	hgsc.bcm.edu	37	11	1258389	1258389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	MUC5B,NS,carcinoma,0,2	MUC5B	NM_002458	exon25	c.T3292G	p.S1098A	TGCCGCTCCCAGG	.	32	4	16	1	.	0
GARNL3	84253	hgsc.bcm.edu	37	9	130152985	130152985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	GARNL3,NS,carcinoma,0,1	GARNL3	NM_032293	exon27	c.C2809T	p.R937W	CGGAAGCGGTTAG	.	40	2	35	0	.	0
GINM1	116254	hgsc.bcm.edu;bcgsc.ca	37	6	149911865	149911865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_138785	exon8	c.G884T	p.G295V	TCAGAGGAATTCT	.	73	4	52	0	.	.
PI15	51050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	75737721	75737721	+	Silent	SNP	C	C	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_015886	exon2	c.C237A	p.G79G	TCGGGGCAAAGTG	.	81	9	56	0	.	.
SELENBP1	8991	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	151339353	151339353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001258289	exon6	c.C635T	p.T212M	TCGAACGTCTCCC	.	49	4	45	0	.	.
BRCA2	675	hgsc.bcm.edu	37	13	32913479	32913479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_000059	exon11	c.G4987A	p.V1663I	TATTCAGTCATTG	.	78	4	50	0	.	.
PYGB	5834	hgsc.bcm.edu	37	20	25269107	25269107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	PYGB,NS,carcinoma,0,1	PYGB	NM_002862	exon15	c.G1815T	p.M605I	TGTTATGATTGGG	.	45	2	33	0	.	0
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63057875	63057875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001039752	exon1	c.G238T	p.D80Y	CCACTAGACTCAA	.	78	8	48	0	.	.
SHC4	399694	hgsc.bcm.edu;ucsc.edu	37	15	49254750	49254750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_203349	exon1	c.G463A	p.A155T	CGGTTGCCCTGTG	.	42	4	43	0	.	.
ANKRD26P1	124149	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	46562259	46562259	+	RNA	SNP	C	C	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	GAAAAGCCTTTAG	.	122	13	95	0	.	.
PIEZO2	63895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	10797478	10797478	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_022068	exon12	c.A1421T	p.E474V	CTTTCTTCTTCAA	.	104	10	85	0	.	.
ND6	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	14384	14384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	ENST00000361681	exon1	c.C290T	p.A97V	TCCATCGCTAACC	.	206	92	79	0	.	.
THSD4	79875	hgsc.bcm.edu	37	15	71952877	71952877	+	Silent	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_024817	exon7	c.C1161T	p.G387G	CATTGGCTGTGAT	.	73	3	44	0	.	.
TM6SF2	53345	hgsc.bcm.edu	37	19	19377337	19377337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	TM6SF2,NS,carcinoma,0,1	TM6SF2	NM_001001524	exon9	c.C886T	p.P296S	AGTCTGGAAGCCA	.	63	2	33	0	.	0
ZNF569	148266	hgsc.bcm.edu	37	19	37905042	37905042	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_152484	exon6	c.C518A	p.S173X	CCATATGATTTCA	.	74	4	46	0	.	.
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	6007401	6007401	+	Silent	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001017969	exon1	c.C387T	p.F129F	CTGCGGGAAGGCG	.	37	9	26	0	.	.
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179454980	179454980	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001267550	exon304	c.G61472A	p.G20491D	GTTTGGCCTACTC	.	87	4	58	0	.	.
CCDC171	203238	hgsc.bcm.edu	37	9	15784546	15784546	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	C9orf93,rectum,carcinoma,0,1	C9orf93	NM_173550	exon21	c.G3121T	p.E1041X	TGTGAAGAACTAA	.	70	3	33	0	.	0
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	67700164	67700164	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_018448	exon10	c.C2716T	p.Q906X	AAAAGGCAGTATC	.	78	13	61	0	.	.
MUC5B	727897	hgsc.bcm.edu	37	11	1258387	1258387	+	Missense_Mutation	SNP	G	G	A	rs202160055		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	MUC5B,NS,carcinoma,+1,2	MUC5B	NM_002458	exon25	c.G3290A	p.R1097H	CCTGCCGCTCCCA	.	34	4	17	2	.	+1
KIF9-AS1	285352	hgsc.bcm.edu	37	3	47263939	47263939	+	RNA	SNP	A	A	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	TTTTTAATTTTTT	.	51	4	24	0	.	.
ZNRF3	84133	hgsc.bcm.edu	37	22	29445659	29445659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	ZNRF3,NS,carcinoma,0,1	ZNRF3	NM_001206998	exon8	c.G1490A	p.R497H	CGGCCCGTGCCTT	.	15	2	7	0	.	0
FAM193A	8603	hgsc.bcm.edu	37	4	2698298	2698298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	FAM193A,NS,carcinoma,0,1	FAM193A	NM_001256667	exon17	c.G2678T	p.R893L	CGAAGCGAGCAAG	.	41	2	42	0	.	0
CA10	56934	hgsc.bcm.edu;bcgsc.ca	37	17	49710967	49710967	+	Silent	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	CA10,NS,carcinoma,0,1	CA10	NM_001082534	exon9	c.C834A	p.I278I	CAGAAAGATCTGA	.	60	4	42	0	.	0
FGFRL1	53834	hgsc.bcm.edu;broad.mit.edu	37	4	1018129	1018129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001004356	exon6	c.G749A	p.G250D	TCACAGGCACGCA	.	43	4	38	0	.	.
AURKA	6790	hgsc.bcm.edu	37	20	54963211	54963211	+	Splice_Site	SNP	C	C	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	AURKA,NS,carcinoma,0,1	AURKA	NM_198434	exon4	c.42+1G>C	.	AATTTACCTTAAC	.	75	4	69	1	.	0
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	220329177	220329177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	SPEG,NS,carcinoma,-1,1	SPEG	NM_005876	exon9	c.C2728T	p.R910C	CCCGTGCGCCCAG	.	30	4	22	0	.	-1
PTH2	113091	hgsc.bcm.edu	37	19	49926533	49926533	+	Missense_Mutation	SNP	G	G	C	rs200733272	bycluster	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	PTH2,NS,carcinoma,0,9	PTH2	NM_178449	exon1	c.C64G	p.L22V	CCACCAGCAGCAG	.	93	4	53	0	.	0
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	108361320	108361320	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_014648	exon13	c.C1100G	p.T367S	CTGATACTGATAT	.	117	6	73	0	.	.
NLRP8	126205	hgsc.bcm.edu	37	19	56466176	56466176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	NLRP8_ENST00000291971,bladder,carcinoma,0,1	NLRP8_ENST00000291971	NM_176811	exon3	c.C752T	p.T251M	ACCAGACGACAGA	.	69	3	28	1	.	0
PCDHB16	57717	hgsc.bcm.edu	37	5	140563836	140563836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	PCDHB16,NS,carcinoma,0,1	PCDHB16	NM_020957	exon1	c.G1702A	p.G568S	CAGAACGGCTCCG	.	69	3	61	1	.	0
PRG4	10216	hgsc.bcm.edu	37	1	186276262	186276262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.,1	.	NM_005807	exon7	c.A1411C	p.T471P	CCCACCACCAAGG	.	97	5	86	2	.	259
PTPN4	5775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	120620118	120620118	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_002830	exon3	c.G145C	p.D49H	AAACATGATCAGG	.	70	9	56	0	.	.
GRB14	2888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	165476280	165476280	+	Missense_Mutation	SNP	G	G	T	rs139841108	alternate_allele	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_004490	exon2	c.C241A	p.P81T	GAAAAGGGTTTGG	.	70	17	81	0	.	.
MUC21	394263	hgsc.bcm.edu	37	6	30954701	30954701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001010909	exon2	c.G749A	p.S250N	CCTCCAGTGGGGC	.	72	4	71	0	.	.
TATDN3	128387	hgsc.bcm.edu	37	1	212988490	212988490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	TATDN3,NS,malignant_melanoma,0,1	TATDN3	NM_001146171	exon10	c.C838A	p.Q280K	TTGCTCCAGAAAT	.	46	2	32	0	.	0
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57184113	57184113	+	Silent	SNP	T	T	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_017611	exon9	c.A702G	p.E234E	CTTCTCTTCCTTT	.	29	6	12	0	.	.
DEFB126	81623	hgsc.bcm.edu	37	20	126314	126314	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	DEFB126,NS,carcinoma,0,1	DEFB126	NM_030931	exon2	c.C317G	p.P106R	CTACCCCCGTTTC	.	35	2	19	0	.	0
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	41088540	41088540	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_001039591	exon42	c.C7096T	p.R2366X	GATGACCGAGATG	.	79	17	58	0	.	.
LMOD2	442721	hgsc.bcm.edu	37	7	123303794	123303794	+	Nonsense_Mutation	SNP	C	C	T	rs375457267		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_207163	exon3	c.C1639T	p.R547X	GCCCTGCGATAAA	.	90	4	36	0	.	.
ESPNP	0	broad.mit.edu	37	1	17018972	17018979	+	RNA	DEL	GGGCGGTG	GGGCGGTG	-	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	GCGGGCGGGCGGT	.	34	8	24	0	.	.
HNRNPU-AS1	0	broad.mit.edu	37	1	245009651	245009651	+	RNA	DEL	A	A	-	rs66801676	bycluster	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	TGTACTAAAAAAA	.	9	4	5	0	A|0.500;-|0.500	.
OR2L2	26246	broad.mit.edu	37	1	248202088	248202088	+	Silent	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	OR2L2	NM_001004686	exon1	c.C519T	p.I173I	AGCCATCAATCAT	.	78	5	57	0	.	115
RNF220	55182	broad.mit.edu	37	1	44877854	44877854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	RNF220	NM_018150	exon2	c.G85A	p.A29T	GTCCTGGCATCCA	.	33	3	25	0	.	56
HSD17B7P2	0	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765	bysubmitter	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	CTCGCAATGCAAG	.	60	3	35	0	A|1.000;|0.000	.
LINC00200	0	broad.mit.edu	37	10	1206472	1206472	+	RNA	DEL	T	T	-	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	CCAGGATTTTTTT	.	12	4	9	0	.	.
ANKK1	255239	broad.mit.edu	37	11	113270133	113270133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	ANKK1	NM_178510	exon8	c.T1442A	p.V481D	TTCTGGTCTCCCG	.	22	3	21	0	.	83
ATM	472	broad.mit.edu	37	11	108115752	108115752	+	Splice_Site	SNP	A	A	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	ATM	NM_000051	exon7	c.A900G	p.K300K	AGAAAAAGGTATA	.	139	4	77	0	.	1657
CRTAM	56253	broad.mit.edu	37	11	122733141	122733141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	CRTAM	.	.	.	.	TCTATAGTAGCAG	.	43	3	40	0	.	50
MUC2	4583	broad.mit.edu	37	11	1093232	1093232	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	MUC2	NM_002457	exon30	c.T5051G	p.V1684G	CTACGGTGACCCC	.	237	5	164	2	.	614
.	0	broad.mit.edu;bcgsc.ca	37	12	31266007	31266007	+	RNA	SNP	C	C	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	TCTGCTCGACCAA	.	263	19	199	0	.	.
.	0	broad.mit.edu	37	12	25168090	25168090	+	RNA	DEL	T	T	-	rs11352951	bycluster	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	GTTTTGTTTTTTT	.	11	1	7	0	.	.
SAV1	60485	broad.mit.edu	37	14	51107521	51107521	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SAV1	NM_021818	exon4	c.T897G	p.Y299X	AGTATGATATGGA	.	80	3	73	0	.	18
SLC8A3	6547	broad.mit.edu	37	14	70634323	70634323	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SLC8A3	NM_183002	exon2	c.A817C	p.I273L	TGATAATTCCTCG	.	38	3	49	0	.	234
MYO9A	4649	broad.mit.edu	37	15	72190344	72190344	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	MYO9A	NM_006901	exon25	c.G4500C	p.R1500S	TTTTTGCCTTTCT	.	69	3	44	0	.	203
LOC645752	0	broad.mit.edu	37	15	78212618	78212618	+	RNA	SNP	A	A	G	rs71402960	alternate_allele	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	ACCGCCACTGGAG	.	102	4	103	0	G|1.000;|0.000	.
LOC283683	0	broad.mit.edu	37	15	23114284	23114284	+	RNA	SNP	T	T	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	TCCCAGTTCTCAG	.	142	4	113	0	.	.
SLCO3A1	28232	broad.mit.edu	37	15	92706141	92706141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SLCO3A1	NM_013272	exon10	c.G1909T	p.A637S	TCCTTCGCCTTCA	.	36	3	27	0	.	84
SALL1	6299	broad.mit.edu	37	16	51173869	51173869	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SALL1	NM_002968	exon2	c.T2264G	p.V755G	CGATGGACACTGT	.	57	5	55	0	.	301
SPATA20	64847	broad.mit.edu	37	17	48626266	48626266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SPATA20	NM_022827	exon5	c.G457T	p.V153L	GTGAGTGTGAAGG	.	47	3	39	0	.	59
.	342850	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12096211	12096211	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	CATCACTTTTACT	.	110	14	80	0	.	.
SMARCA4	6597	broad.mit.edu	37	19	11141508	11141508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	SMARCA4_ENST00000358026,right_upper_lobe,carcinoma,+1,3	SMARCA4	NM_003072	exon25	c.G3485T	p.G1162V	GGCTCGGCCTGAA	.	99	5	79	0	.	502
.	0	broad.mit.edu	37	2	78020197	78020198	+	RNA	DEL	TC	TC	-	rs373550616	alternate_allele	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	TAAAAATCCTAAA	.	9	2	6	0	.	.
FAM179A	165186	broad.mit.edu;bcgsc.ca	37	2	29274737	29274737	+	Silent	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	FAM179A	NM_199280	exon20	c.C2838T	p.S946S	ACCCAGCGGGAAC	.	92	8	76	0	.	106
FSIP2	401024	broad.mit.edu;bcgsc.ca	37	2	186661056	186661056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	FSIP2	NM_173651	exon16	c.C9460A	p.Q3154K	AACATACAGAATA	.	77	9	62	0	.	251
IRS1	3667	broad.mit.edu	37	2	227660543	227660543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	IRS1	NM_005544	exon1	c.G2912A	p.G971E	GCAGCCCCGGGAG	.	23	3	18	0	.	141
FAM182B	0	broad.mit.edu	37	20	25755510	25755510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	FAM182B	.	.	.	.	CCATCGCGGCCAC	.	173	5	141	1	.	6
.	0	broad.mit.edu	37	21	24474482	24474482	+	RNA	DEL	A	A	-	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	CATCTCAAAAAAA	.	6	2	8	0	.	.
BAGE	85319	broad.mit.edu	37	21	11058603	11058603	+	RNA	DEL	G	G	-	rs57429001	bycluster	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	CCTAAAGATTTTT	.	19	10	7	1	.	.
HSCB	150274	broad.mit.edu	37	22	29138126	29138126	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	HSCB	NM_172002	exon1	c.T43G	p.F15V	TGGGGGTTTTGGC	.	55	9	35	5	.	16
PICK1	9463	broad.mit.edu	37	22	38463728	38463728	+	Silent	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	PICK1	NM_012407	exon5	c.C300T	p.H100H	CATCCACTACAAC	.	35	3	20	0	.	30
.	0	broad.mit.edu;bcgsc.ca	37	4	150469687	150469687	+	RNA	SNP	T	T	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	GGGAGCTCATTTC	.	101	8	81	0	.	.
SLC9A3	6550	broad.mit.edu	37	5	476666	476666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	SLC9A3	NM_004174	exon12	c.C1882T	p.R628W	CCTGCCGCGGCTT	.	19	3	13	0	.	89
SEC63	11231	broad.mit.edu	37	6	108214765	108214765	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	SEC63,NS,carcinoma,0,1	SEC63	NM_007214	exon16	c.T1595A	p.L532X	TTTTTTAAAGGTT	.	110	5	94	1	.	79
EGFR	1956	broad.mit.edu	37	7	55249090	55249090	+	Silent	SNP	C	C	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	EGFR,colon,carcinoma,+2,8	EGFR	NM_005228	exon20	c.C2388T	p.G796G	CTTCGGCTGCCTC	.	30	3	24	0	.	20426
GPR85	0	broad.mit.edu	37	7	112723989	112723989	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	GPR85	NM_001146265	exon3	c.C788G	p.A263G	GTGTTTGCATTTT	.	42	3	27	0	.	49
GTF2IRD2P1	0	broad.mit.edu	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	CCGGGGTCCTTGA	.	51	3	36	0	T|0.500;G|0.500	.
ATAD2	29028	broad.mit.edu	37	8	124340548	124340548	+	Silent	SNP	A	A	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	ATAD2	NM_014109	exon25	c.T3750C	p.N1250N	AAGCTCATTCTCT	.	50	3	47	0	.	160
FAM108B1	51104	broad.mit.edu	37	9	74489678	74489678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	FAM108B1	NM_016014	exon2	c.A319G	p.M107V	TGCTCATTTGACC	.	42	3	33	0	.	24
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	59	4	55	0	.	28
FREM2	341640	ucsc.edu;bcgsc.ca	37	13	39433640	39433640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	FREM2,caecum,carcinoma,-1,1	FREM2	NM_207361	exon14	c.G7432T	p.V2478L	TCCCGGGTACAGT	.	25	4	28	0	.	385
.	126811	bcgsc.ca	37	1	73571831	73571831	+	RNA	SNP	T	G	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	ACGTCCTGGGCTC	.	54	7	58	0	.	.
ALLC	55821	bcgsc.ca	37	2	3730548	3730548	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	ALLC,NS,carcinoma,+1,2	ALLC	NM_018436	exon7	c.G395T	p.W132L	ACGACTGGAGTTA	.	66	4	62	0	.	61
C2orf16	84226	bcgsc.ca	37	2	27804408	27804408	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	C2orf16	NM_032266	exon1	c.C4969T	p.P1657S	CGCAGTCCCTCAG	.	60	5	40	0	.	357
WDR19	57728	bcgsc.ca	37	4	39226502	39226502	+	Splice_Site	SNP	A	T	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	WDR19	NM_025132	exon15	c.1480-2A>T	.	TTTTTTAGACTGG	.	71	11	49	3	.	96
.	3323	bcgsc.ca	37	4	190396081	190396081	+	RNA	SNP	G	C	C	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	TTTATTGACACCT	.	55	8	63	0	.	.
.	0	bcgsc.ca	37	6	27705332	27705332	+	RNA	SNP	G	A	A	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	GGTAGCGTACAGA	.	122	12	83	0	.	.
.	0	bcgsc.ca	37	7	56358084	56358084	+	RNA	SNP	G	T	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	.	.	.	.	AGCCTTGGTGAGG	.	58	4	51	0	.	.
TBPL2	387332	bcgsc.ca	37	14	55903453	55903453	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	TBPL2	NM_199047	exon2	c.G434A	p.G145D	TTTAAGCCCAGCC	.	67	4	94	0	.	27
LILRB5	10990	bcgsc.ca	37	19	54754843	54754843	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	LILRB5	.	.	.	.	GTGGGGAGGCCTG	.	79	14	49	1	.	176
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	125752410	125752411	+	Missense_Mutation	DNP	GC	GC	CT	novel		TCGA-ZU-A8S4-01A-11D-A417-09	TCGA-ZU-A8S4-10A-01D-A41A-09	GC	GC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	bd3b04ff-8026-44bb-9b86-c43ac8d4153c	ab65e654-58a5-4d99-b72e-78211c8d1c86	.	.	NM_012197	exon6	c.C842T	p.A281L	CTGCTGCACCCCA	.	67	5	61	0	.	.