Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TTotCov TVarCov NTotCov NVarCov TVarRat NVarRat dbSNP_AF dbSNP_PopFreq dbSNP_Strength COSMIC_Codon COSMIC_Gene COSMIC_Gene_Freq COSMIC_Site_Freq Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target Confidence Algorithm MLL2 8085 hgsc.bcm.edu 37 12 49441815 49441816 + Frame_Shift_Ins INS - - C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 55.0 17.0 67.0 0.0 0.309 . . . none . MLL2 1173 . NM_003482 exon14 c.4169_4170insG p.A1390fs . . PASS Pindel,Atlas-Indel KCNA6 3742 hgsc.bcm.edu 37 12 4919954 4919957 + Frame_Shift_Del DEL CTCA CTCA - novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 CTCA CTCA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 121.0 36.0 149.0 0.0 0.298 . . . none . KCNA6 122 . NM_002235 exon1 c.746_749del p.249_250del . . PASS Pindel,Atlas-Indel MCM3AP 8888 hgsc.bcm.edu 37 21 47704722 47704723 + Frame_Shift_Ins INS - - C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 39.0 15.0 49.0 0.0 0.385 . . . none . MCM3AP 146 . NM_003906 exon1 c.479_480insG p.A160fs . . PASS Pindel,Atlas-Indel TTN 7273 hgsc.bcm.edu 37 2 179428230 179428233 + Frame_Shift_Del DEL TCTG TCTG - novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 TCTG TCTG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 108.0 31.0 157.0 0.0 0.287 . . . none . TTN 18412 . NM_001267550 exon326 c.82627_82630del p.27543_27544del . . PASS Pindel,Atlas-Indel ASXL1 171023 hgsc.bcm.edu 37 20 31023636 31023636 + Frame_Shift_Del DEL G G - novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 136.0 32.0 121.0 0.0 0.235 . . . none . ASXL1 1114 . NM_015338 exon12 c.3120delT p.S1040fs . . PASS Pindel,Atlas-Indel RAI1 10743 hgsc.bcm.edu 37 17 17699094 17699095 + Frame_Shift_Del DEL CT CT - novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 126.0 41.0 125.0 0.0 0.325 . . . none . RAI1 121 . NM_030665 exon3 c.2831_2832del p.944_944del . . PASS Pindel,Atlas-Indel HIST1H2AC 8334 hgsc.bcm.edu 37 6 26124573 26124585 + Frame_Shift_Del DEL GCAACTACGCAGA GCAACTACGCAGA - novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 GCAACTACGCAGA GCAACTACGCAGA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 196.0 35.0 168.0 0.0 0.178571 0 . . none . HIST1H2AC 29 . NM_003512 exon1 c.112_124del p.38_42del . . PASS Atlas-Indel PAX5 5079 hgsc.bcm.edu 37 9 36923482 36923482 + Splice_Site SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 29.0 15.0 27.0 0.0 0.517241 0 . . none . PAX5 250 . NM_016734 exon8 c.781-1G>A . TGTGGTCTGAAAG . PASS Atlas-SNP CCT6A 908 hgsc.bcm.edu 37 7 56129454 56129454 + Missense_Mutation SNP C C G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 295.0 66.0 303.0 0.0 0.223729 0 . . none . CCT6A 44 . NM_001762 exon12 c.C1362G p.N454K TCAGAACTCTGGT . PASS Atlas-SNP ROBO1 6091 hgsc.bcm.edu 37 3 78667095 78667095 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 192.0 55.0 178.0 1.0 0.286458 0.00561798 . . none ROBO1_ENST00000495273,NS,carcinoma,-1,4 ROBO1 833 4 NM_002941 exon27 c.G3972A p.T1324T CGCATCCGTATCC . scavenged Atlas-SNP MLL2 8085 hgsc.bcm.edu 37 12 49415922 49415922 + Missense_Mutation SNP A A T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 47.0 16.0 76.0 0.0 0.340426 0 . . none . MLL2 1173 . NM_003482 exon53 c.T16425A p.H5475Q ACAGGAATGGTTA . PASS Atlas-SNP AMOT 154796 hgsc.bcm.edu 37 X 112033851 112033851 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 191.0 116.0 424.0 0.0 0.60733 0 . . none . AMOT 204 . NM_001113490 exon7 c.C2086G p.L696V CATCCAGAGCAAA . PASS Atlas-SNP CNOT3 4849 hgsc.bcm.edu 37 19 54646891 54646891 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 65.0 23.0 75.0 0.0 0.353846 0 . . none . CNOT3 133 . NM_014516 exon3 c.G62T p.G21V CCGAGGGCGTGGA . PASS Atlas-SNP PROX1 5629 hgsc.bcm.edu 37 1 214178516 214178516 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 98.0 31.0 122.0 0.0 0.316327 0 . . none . PROX1 124 . NM_001270616 exon3 c.A1734C p.E578D GCAGGAAGGATTG . PASS Atlas-SNP SLAMF6 114836 hgsc.bcm.edu 37 1 160461146 160461146 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 95.0 36.0 84.0 0.0 0.378947 0 . . none . SLAMF6 46 . NM_052931 exon3 c.A415G p.S139G GCTGACTGTGATT . PASS Atlas-SNP PLCXD3 345557 hgsc.bcm.edu 37 5 41381956 41381956 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 144.0 54.0 208.0 0.0 0.375 0 . . none . PLCXD3 86 . NM_001005473 exon2 c.A784C p.S262R GGCCACTTGCCAC . PASS Atlas-SNP ZNF443 10224 hgsc.bcm.edu 37 19 12542646 12542646 + Missense_Mutation SNP C C T rs199587788 alternate_allele TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 200.0 90.0 244.0 0.0 0.45 0 . . alt ZNF443,caecum,carcinoma,0,1 ZNF443 63 1 NM_005815 exon4 c.G340A p.G114S AATGACCCATGAC . PASS Atlas-SNP GALNT1 2589 hgsc.bcm.edu 37 18 33283603 33283603 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 100.0 14.0 49.0 0.0 0.14 0 . . none . GALNT1 53 . NM_020474 exon10 c.C1529T p.P510L ATGACCCAGTGGT . PASS Atlas-SNP NTRK3 4916 hgsc.bcm.edu 37 15 88727487 88727487 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 99.0 21.0 52.0 0.0 0.212121 0 . . none . NTRK3 587 . NM_001243101 exon4 c.G292A p.D98N CCATGTCCACGGC . PASS Atlas-SNP HUNK 30811 hgsc.bcm.edu 37 21 33371236 33371236 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 100.0 33.0 121.0 0.0 0.33 0 . . none . HUNK 74 . NM_014586 exon11 c.C1884T p.N628N TAAGAACAGCCCC . PASS Atlas-SNP EXT1 2131 hgsc.bcm.edu 37 8 118812014 118812014 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 188.0 26.0 102.0 0.0 0.138298 0 . . none . EXT1 98 . NM_000127 exon11 c.C2178T p.P726P GAGGACGGGGTCG . PASS Atlas-SNP TMPRSS12 283471 hgsc.bcm.edu 37 12 51237782 51237782 + Silent SNP G G A rs374807523 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 90.0 40.0 111.0 0.0 0.444444 0 . . weak . TMPRSS12 33 . NM_182559 exon2 c.G345A p.R115R AGAGAGGTGGGTC . PASS Atlas-SNP COL5A2 1290 hgsc.bcm.edu 37 2 189927788 189927788 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 68.0 8.0 81.0 0.0 0.117647 0 . . none . COL5A2 230 . NM_000393 exon28 c.G1871A p.G624D GGGTCACCCTAAA . PASS Atlas-SNP NRXN3 9369 hgsc.bcm.edu 37 14 79175759 79175759 + Missense_Mutation SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 163.0 46.0 118.0 0.0 0.282209 0 . . none . NRXN3 342 . NM_004796 exon4 c.A302G p.D101G CCTTTGACTTCCG . PASS Atlas-SNP FAT4 79633 hgsc.bcm.edu 37 4 126408517 126408517 + Silent SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 36.0 10.0 69.0 0.0 0.277778 0 . . none . FAT4 1752 . NM_024582 exon16 c.A12834G p.V4278V CAAAGTATATTTT . PASS Atlas-SNP OR5H1 26341 hgsc.bcm.edu 37 3 97852237 97852237 + Silent SNP A A G rs150614363 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 237.0 35.0 257.0 0.0 0.147679 0 A|1.000;G|0.000 0.000 weak . OR5H1 71 . NM_001005338 exon1 c.A696G p.K232K TGATAAAGGTGTA . PASS Atlas-SNP FILIP1 27145 hgsc.bcm.edu 37 6 76018589 76018589 + Missense_Mutation SNP G G A rs369386052 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 174.0 57.0 149.0 0.0 0.327586 0 . . weak FILIP1,right_upper_lobe,carcinoma,0,1 FILIP1 173 1 NM_015687 exon6 c.C3460T p.R1154W TAGGCCGCTGGGA . PASS Atlas-SNP CDKL2 8999 hgsc.bcm.edu 37 4 76507055 76507055 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 91.0 40.0 94.0 0.0 0.43956 0 . . none . CDKL2 58 . NM_003948 exon11 c.A1470C p.E490D CTGGTGTTCCATT . PASS Atlas-SNP TMSB4X 7114 hgsc.bcm.edu 37 X 12994407 12994407 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 212.0 141.0 366.0 0.0 0.665094 0 . . none . TMSB4X 3 . NM_021109 exon2 c.G27C p.E9D GGCTGAGATCGAG . PASS Atlas-SNP MYADM 91663 hgsc.bcm.edu 37 19 54377236 54377236 + Silent SNP C C T rs376434685 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 84.0 36.0 72.0 0.0 0.428571 0 . . weak . MYADM 39 . NM_138373 exon3 c.C453T p.Y151Y GGCTTACGCCACC . PASS Atlas-SNP OR5T1 390155 hgsc.bcm.edu 37 11 56043714 56043714 + Silent SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 315.0 115.0 402.0 0.0 0.365079 0 . . none OR5T1,NS,carcinoma,0,1 OR5T1 95 1 NM_001004745 exon1 c.T600G p.S200S TATTTCTTGTTCT . PASS Atlas-SNP PADI6 353238 hgsc.bcm.edu 37 1 17701957 17701957 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 60.0 4.0 32.0 0.0 0.0666667 0 . . none . PADI6 51 . NM_207421 exon3 c.C330T p.A110A GGATGCCCCCGTG . PASS Atlas-SNP KLF15 28999 hgsc.bcm.edu 37 3 126070934 126070934 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 389.0 96.0 331.0 0.0 0.246787 0 . . none . KLF15 40 . NM_014079 exon2 c.T832G p.F278V GCACAAACTTGGA . PASS Atlas-SNP PARD3B 117583 hgsc.bcm.edu 37 2 206110509 206110509 + Silent SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 169.0 61.0 234.0 0.0 0.360947 0 . . none . PARD3B 314 . NM_205863 exon16 c.T2148C p.D716D GCCAGATGAAAGC . PASS Atlas-SNP TEX10 54881 hgsc.bcm.edu 37 9 103090132 103090132 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 125.0 51.0 162.0 0.0 0.408 0 . . none . TEX10 99 . NM_001161584 exon8 c.G1747A p.A583T CTGCAGCGGTATG . PASS Atlas-SNP AADACL3 126767 hgsc.bcm.edu 37 1 12785877 12785877 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 137.0 52.0 154.0 0.0 0.379562 0 . . none . AADACL3 84 . NM_001103170 exon4 c.C967T p.L323F GGAGTGCTCAGGA . PASS Atlas-SNP UNC5B 219699 hgsc.bcm.edu 37 10 73053316 73053316 + Nonsense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 45.0 23.0 49.0 0.0 0.511111 0 . . none . UNC5B 123 . NM_170744 exon12 c.C1927T p.Q643X GCCCACCAGGGCC . PASS Atlas-SNP UGT1A3 54659 hgsc.bcm.edu 37 2 234638243 234638243 + Silent SNP C C T rs375083511 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 258.0 105.0 277.0 1.0 0.406977 0.00361011 . . weak . UGT1A3 91 . NM_019093 exon1 c.C471T p.C157C CCTCTGCGCGGCA . PASS Atlas-SNP RIMBP2 23504 hgsc.bcm.edu 37 12 130926675 130926675 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 127.0 52.0 157.0 0.0 0.409449 0 . . none RIMBP2,colon,carcinoma,+2,1 RIMBP2 220 1 NM_015347 exon8 c.G1171A p.V391M CCACCACCACGTC . PASS Atlas-SNP TRIM6-TRIM34 445372 hgsc.bcm.edu 37 11 5664047 5664047 + Missense_Mutation SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 97.0 4.0 85.0 0.0 0.0412371 0 . . none . TRIM6-TRIM34 68 . NM_001003819 exon13 c.A1937G p.E646G TTTCAGAACTGAC . PASS Atlas-SNP CHD4 1108 hgsc.bcm.edu 37 12 6702746 6702746 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 77.0 25.0 88.0 0.0 0.324675 0 . . none . CHD4 539 . NM_001273 exon16 c.C2350G p.L784V TAGAAAGAGGGGC . PASS Atlas-SNP SLC22A23 63027 hgsc.bcm.edu 37 6 3273638 3273638 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 92.0 27.0 48.0 0.0 0.293478 0 . . none SLC22A23_ENST00000406686,colon,carcinoma,-1,2 SLC22A23 89 2 NM_015482 exon10 c.G1712A p.G571E CCCAGCCCGCCAC . PASS Atlas-SNP CCR3 1232 hgsc.bcm.edu 37 3 46307515 46307515 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 142.0 45.0 122.0 0.0 0.316901 0 . . none . CCR3 52 . NM_178328 exon3 c.T929G p.I310S AGGTGATCGCCTA . PASS Atlas-SNP CCDC102B 79839 hgsc.bcm.edu 37 18 66721311 66721311 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 39.0 15.0 28.0 0.0 0.384615 0 . . none CCDC102B,NS,carcinoma,0,1 CCDC102B 92 1 NM_001093729 exon10 c.G1479A p.L493L GTCTCTGGATGAA . PASS Atlas-SNP MKRN2 23609 hgsc.bcm.edu 37 3 12610409 12610409 + Missense_Mutation SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 172.0 42.0 128.0 0.0 0.244186 0 . . none . MKRN2 32 . NM_014160 exon2 c.A62G p.Q21R GAAGTCAGTGCCT . PASS Atlas-SNP PCDHB10 56126 hgsc.bcm.edu 37 5 140574381 140574381 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 128.0 64.0 84.0 0.0 0.5 0 . . none . PCDHB10 177 . NM_018930 exon1 c.G2256T p.Q752H CTACCAGTATGAG . PASS Atlas-SNP MUC2 4583 hgsc.bcm.edu 37 11 1093448 1093448 + Missense_Mutation SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 62.0 4.0 89.0 2.0 0.0645161 0.0224719 . . none MUC2_ENST00000441003,NS,carcinoma,0,8 MUC2 614 8 NM_002457 exon30 c.C5267A p.T1756N CCCCAACCCCGAC . scavenged Atlas-SNP GABRB1 2560 hgsc.bcm.edu 37 4 47427752 47427752 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 74.0 30.0 73.0 0.0 0.405405 0 . . none GABRB1,NS,carcinoma,-1,1 GABRB1 107 1 NM_000812 exon9 c.C1142T p.S381L GTGGCTCGGAAGT . PASS Atlas-SNP GPCPD1 56261 hgsc.bcm.edu 37 20 5559162 5559162 + Nonsense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 154.0 71.0 130.0 0.0 0.461039 0 . . none . GPCPD1 52 . NM_019593 exon8 c.T569G p.L190X CTTATTAAGGATA . PASS Atlas-SNP VWDE 221806 hgsc.bcm.edu 37 7 12397001 12397001 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 133.0 37.0 134.0 0.0 0.278196 0 . . none . VWDE 123 . NM_001135924 exon17 c.A3415C p.S1139R AAACACTTGCCCC . PASS Atlas-SNP DNAI2 64446 hgsc.bcm.edu 37 17 72287205 72287205 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 111.0 53.0 123.0 0.0 0.477477 0 . . none . DNAI2 102 . NM_001172810 exon6 c.C657T p.L219L TCCACTCGTGACG . PASS Atlas-SNP NEDD4L 23327 hgsc.bcm.edu 37 18 56057939 56057939 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 211.0 44.0 168.0 0.0 0.208531 0 . . none . NEDD4L 126 . NM_001144967 exon29 c.C2717T p.S906L GGACATCGCGAGT . PASS Atlas-SNP THRB 7068 hgsc.bcm.edu 37 3 24231565 24231565 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 103.0 26.0 88.0 0.0 0.252427 0 . . none . THRB 52 . NM_000461 exon4 c.G283A p.G95R GGTTACCTTTACA . PASS Atlas-SNP ANKRD30B 374860 hgsc.bcm.edu 37 18 14787093 14787093 + Missense_Mutation SNP T T A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 478.0 74.0 367.0 0.0 0.154812 0 . . none . ANKRD30B 237 . NM_001145029 exon15 c.T1728A p.D576E TTGGGATTCTGAG . PASS Atlas-SNP ANTXR2 118429 hgsc.bcm.edu 37 4 80899206 80899206 + Silent SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 296.0 105.0 331.0 1.0 0.35473 0.00302115 . . none . ANTXR2 97 . NM_001145794 exon15 c.A1302G p.K434K TGTGGGTTTGGGT . PASS Atlas-SNP RAF1 5894 hgsc.bcm.edu 37 3 12627284 12627284 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 81.0 16.0 54.0 0.0 0.197531 0 . . none RAF1,NS,lymphoid_neoplasm,0,2 RAF1 66 2 NM_002880 exon14 c.G1432A p.E478K AGCCTTCATGGAG . PASS Atlas-SNP SYCP3 50511 hgsc.bcm.edu 37 12 102131710 102131710 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 70.0 4.0 99.0 0.0 0.0571429 0 . . none . SYCP3 19 . NM_001177949 exon2 c.G4A p.V2M AGGACACCATATT . PASS Atlas-SNP SDPR 8436 hgsc.bcm.edu 37 2 192700876 192700876 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 128.0 51.0 137.0 0.0 0.398438 0 . . none . SDPR 67 . NM_004657 exon2 c.A1051C p.I351L CTGCAATTTCCCC . PASS Atlas-SNP FLG 2312 hgsc.bcm.edu 37 1 152284337 152284337 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 342.0 121.0 440.0 1.0 0.353801 0.00227273 . . none . FLG 900 . NM_002016 exon3 c.C3025G p.H1009D CTGCGTGAGGAGT . PASS Atlas-SNP C12orf52 84934 hgsc.bcm.edu 37 12 113629195 113629195 + Missense_Mutation SNP G G A rs368110690 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 51.0 16.0 50.0 0.0 0.313726 0 . . weak C12orf52,colon,carcinoma,0,1 C12orf52 19 1 NM_032848 exon4 c.G383A p.R128Q CCCCGCGGATGGC . PASS Atlas-SNP UNC13C 440279 hgsc.bcm.edu 37 15 54792317 54792317 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 207.0 73.0 225.0 0.0 0.352657 0 . . none . UNC13C 674 . NM_001080534 exon19 c.G5101C p.E1701Q GAAAACGAAGATG . PASS Atlas-SNP ARL6IP4 51329 hgsc.bcm.edu 37 12 123465786 123465786 + Missense_Mutation SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 139.0 45.0 165.0 0.0 0.323741 0 . . none ARL6IP4,NS,carcinoma,-2,1 ARL6IP4 14 1 NM_018694 exon2 c.A469G p.R157G ACCTCGAGGAACT . PASS Atlas-SNP LRRFIP1 9208 hgsc.bcm.edu 37 2 238688143 238688143 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 55.0 24.0 60.0 0.0 0.436364 0 . . none . LRRFIP1 171 . NM_001137550 exon24 c.G1891A p.A631T ATGAAAGCAAATC . PASS Atlas-SNP PLEKHM3 389072 hgsc.bcm.edu 37 2 208795754 208795754 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 150.0 66.0 177.0 0.0 0.44 0 . . none . PLEKHM3 101 . NM_001080475 exon5 c.C1782A p.H594Q CTCTGCGTGGTGG . PASS Atlas-SNP HPDL 84842 hgsc.bcm.edu 37 1 45793485 45793485 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 79.0 31.0 90.0 0.0 0.392405 0 . . none . HPDL 14 . NM_032756 exon1 c.G665A p.G222D AGCCGGGCAGCAT . PASS Atlas-SNP COL11A1 1301 hgsc.bcm.edu 37 1 103449740 103449740 + Missense_Mutation SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 12.0 6.0 24.0 0.0 0.5 0 . . none COL11A1_ENST00000370096,right_lower_lobe,carcinoma,+1,4 COL11A1 972 4 NM_080629 exon31 c.T2546C p.L849P ACTCCAAGTTTTC . PASS Atlas-SNP PGBD4 161779 hgsc.bcm.edu 37 15 34396115 34396115 + Missense_Mutation SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 45.0 14.0 24.0 0.0 0.311111 0 . . none . PGBD4 58 . NM_152595 exon1 c.C1383A p.H461Q TCTACACATTACA . PASS Atlas-SNP PRDM10 56980 hgsc.bcm.edu 37 11 129801147 129801147 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 140.0 43.0 99.0 0.0 0.307143 0 . . none . PRDM10 120 . NM_020228 exon11 c.C1294T p.L432L AATGTAGCAAGTC . PASS Atlas-SNP ZNF461 92283 hgsc.bcm.edu 37 19 37129817 37129817 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 94.0 34.0 105.0 0.0 0.361702 0 . . none . ZNF461 73 . NM_153257 exon6 c.C1430T p.A477V CTAAAGGCCTTAC . PASS Atlas-SNP ENPP4 22875 hgsc.bcm.edu 37 6 46111076 46111076 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 100.0 4.0 97.0 0.0 0.04 0 . . none . ENPP4 44 . NM_014936 exon4 c.C1061T p.P354L ACGGACCTGCATT . PASS Atlas-SNP PCDHA13 56136 hgsc.bcm.edu 37 5 140264046 140264046 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 103.0 79.0 73.0 0.0 0.76699 0 . . none . PCDHA13 213 . NM_031865 exon1 c.G2193A p.A731A GGGCGCGTGCGCG . PASS Atlas-SNP GRID1 2894 hgsc.bcm.edu 37 10 87615870 87615870 + Nonsense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 138.0 57.0 159.0 0.0 0.413043 0 . . none . GRID1 204 . NM_017551 exon7 c.G1029A p.W343X GCTATGCCACTTC . PASS Atlas-SNP ZNF462 58499 hgsc.bcm.edu 37 9 109689973 109689973 + Silent SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 71.0 28.0 103.0 0.0 0.394366 0 . . none ZNF462,rectum,carcinoma,0,1 ZNF462 322 1 NM_021224 exon3 c.G3780T p.T1260T CAAAACGAAACTC . PASS Atlas-SNP SDHAF2 54949 hgsc.bcm.edu 37 11 61205178 61205178 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 171.0 78.0 180.0 0.0 0.45614 0 . . none . SDHAF2 26 . NM_017841 exon2 c.C118T p.P40S GACAGCCCAACAG . PASS Atlas-SNP MPP7 143098 hgsc.bcm.edu 37 10 28412969 28412969 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 51.0 19.0 62.0 0.0 0.372549 0 . . none . MPP7 60 . NM_173496 exon10 c.A606G p.I202M AATCTGTATTATT . PASS Atlas-SNP EPHB3 2049 hgsc.bcm.edu 37 3 184290807 184290807 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 139.0 45.0 99.0 0.0 0.323741 0 . . none . EPHB3 114 . NM_004443 exon3 c.G699A p.S233S CACCTCGCTGGTC . PASS Atlas-SNP DMP1 1758 hgsc.bcm.edu 37 4 88580612 88580612 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 175.0 61.0 217.0 0.0 0.348571 0 . . none . DMP1 72 . NM_004407 exon5 c.A165C p.K55N CAGTAAAGTTAGC . PASS Atlas-SNP MYO1F 4542 hgsc.bcm.edu 37 19 8601222 8601222 + Missense_Mutation SNP C C T rs199663368 by1000genomes TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 24.0 11.0 34.0 0.0 0.458333 0 C|1.000;T|0.000 0.000 strong . MYO1F 128 . NM_012335 exon19 c.G1957A p.V653I GCTGGACGCCCTG . PASS Atlas-SNP PTPN4 5775 hgsc.bcm.edu 37 2 120725435 120725435 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 52.0 19.0 59.0 0.0 0.365385 0 . . none . PTPN4 89 . NM_002830 exon26 c.G2581A p.V861I ACTGGGGTTCTTA . PASS Atlas-SNP SERPINH1 871 hgsc.bcm.edu 37 11 75277624 75277624 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 12.0 5.0 14.0 0.0 0.416667 0 . . none . SERPINH1 33 . NM_001235 exon2 c.C230T p.S77L CCTCGTCGCTAGG . PASS Atlas-SNP TMEM201 199953 hgsc.bcm.edu 37 1 9670573 9670573 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 39.0 14.0 53.0 0.0 0.358974 0 . . none . TMEM201 63 . NM_001130924 exon9 c.C1475T p.S492F ACTTCTCTCTTCT . PASS Atlas-SNP MLLT4 4301 hgsc.bcm.edu 37 6 168369872 168369872 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 84.0 28.0 84.0 0.0 0.333333 0 . . none . MLLT4 351 . NM_001207008 exon31 c.C5072T p.S1691F AGCGCTCTAAAAG . PASS Atlas-SNP ENOX1 55068 hgsc.bcm.edu 37 13 43987001 43987001 + Missense_Mutation SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 64.0 22.0 89.0 0.0 0.34375 0 . . none . ENOX1 158 . NM_017993 exon4 c.T50C p.L17P TGAGGAAGCTCCT . PASS Atlas-SNP NKAPL 222698 hgsc.bcm.edu 37 6 28227333 28227333 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 80.0 44.0 88.0 0.0 0.55 0 . . none . NKAPL 72 . NM_001007531 exon1 c.G184A p.A62T GTGGGCGCTCTTT . PASS Atlas-SNP VCAN 1462 hgsc.bcm.edu 37 5 82834917 82834917 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 103.0 44.0 112.0 0.0 0.427184 0 . . none . VCAN 498 . NM_004385 exon8 c.A6095C p.K2032T TGCAAAAGTTTTC . PASS Atlas-SNP NR2E3 10002 hgsc.bcm.edu 37 15 72103180 72103180 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 283.0 64.0 260.0 0.0 0.226148 0 . . none . NR2E3 53 . NM_016346 exon1 c.G97T p.G33C AGATGGGGCCTGG . PASS Atlas-SNP TTC21A 199223 hgsc.bcm.edu 37 3 39174704 39174704 + Silent SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 108.0 34.0 112.0 0.0 0.314815 0 . . none . TTC21A 96 . NM_145755 exon20 c.C2745A p.V915V GGATGTCTTCTCC . PASS Atlas-SNP PEAR1 375033 hgsc.bcm.edu 37 1 156883019 156883019 + Missense_Mutation SNP A A T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 108.0 50.0 133.0 0.0 0.462963 0 . . none . PEAR1 118 . NM_001080471 exon19 c.A2456T p.N819I ACTCCAACCCCAG . PASS Atlas-SNP HCN4 10021 hgsc.bcm.edu 37 15 73616204 73616204 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 77.0 6.0 67.0 0.0 0.0779221 0 . . none . HCN4 150 . NM_005477 exon8 c.C2230A p.Q744K CAATCTGCTGGAT . PASS Atlas-SNP SLC1A7 6512 hgsc.bcm.edu 37 1 53569135 53569135 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 90.0 34.0 96.0 0.0 0.377778 0 . . none . SLC1A7 65 . NM_006671 exon5 c.C580A p.H194N GCACATGGGAGCC . PASS Atlas-SNP FBXO15 201456 hgsc.bcm.edu 37 18 71749236 71749236 + Missense_Mutation SNP T T A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 187.0 30.0 106.0 0.0 0.160428 0 . . none . FBXO15 97 . NM_001142958 exon9 c.A1189T p.N397Y CTCTGTTATTTTT . PASS Atlas-SNP LAMA5 3911 hgsc.bcm.edu 37 20 60885315 60885315 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 47.0 18.0 44.0 0.0 0.382979 0 . . none . LAMA5 268 . NM_005560 exon77 c.C10653T p.P3551P TGCCAGGGGCCGC . PASS Atlas-SNP SORCS3 22986 hgsc.bcm.edu 37 10 106907486 106907486 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 196.0 86.0 232.0 0.0 0.438776 0 . . none . SORCS3 282 . NM_014978 exon9 c.A1414C p.T472P TACTTCACTCTGG . PASS Atlas-SNP RUNX2 860 hgsc.bcm.edu 37 6 45390482 45390482 + Missense_Mutation SNP C C G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 25.0 2.0 13.0 0.0 0.08 0 . . none RUNX2_ENST00000352853,NS,carcinoma,0,2 RUNX2 128 2 NM_001024630 exon3 c.C211G p.Q71E CAGCAGCAGGAGG . scavenged Atlas-SNP TFPI2 7980 hgsc.bcm.edu 37 7 93519470 93519470 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 83.0 4.0 66.0 0.0 0.0481928 0 . . none . TFPI2 37 . NM_006528 exon2 c.G250A p.D84N AAGCATCGTCGCA . PASS Atlas-SNP VPS8 23355 hgsc.bcm.edu 37 3 184616396 184616396 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 241.0 64.0 222.0 0.0 0.26556 0 . . none . VPS8 109 . NM_001009921 exon23 c.T2048C p.I683T CTATGATCTATGT . PASS Atlas-SNP SEMA3E 9723 hgsc.bcm.edu 37 7 82997329 82997329 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 143.0 30.0 123.0 0.0 0.20979 0 . . none . SEMA3E 125 . NM_012431 exon17 c.A1901C p.K634T TCCATCTTAACCA . PASS Atlas-SNP KCNK18 338567 hgsc.bcm.edu 37 10 118969290 118969290 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 75.0 31.0 86.0 0.0 0.413333 0 . . none . KCNK18 70 . NM_181840 exon3 c.C635T p.P212L CAGGCCCCAAACT . PASS Atlas-SNP FAM179A 165186 hgsc.bcm.edu 37 2 29225519 29225519 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 95.0 35.0 156.0 0.0 0.368421 0 . . none . FAM179A 106 . NM_199280 exon5 c.C545T p.P182L GCATCCCTACCAC . PASS Atlas-SNP CARD11 84433 hgsc.bcm.edu 37 7 2983885 2983885 + Missense_Mutation SNP C C G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 292.0 160.0 239.0 0.0 0.547945 0 . . none CARD11,colon,carcinoma,-2,6 CARD11 339 6 NM_032415 exon5 c.G645C p.K215N CATGTTCTTCTCC . PASS Atlas-SNP SLC17A7 57030 hgsc.bcm.edu 37 19 49937049 49937049 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 58.0 3.0 62.0 0.0 0.0517241 0 . . none SLC17A7,caecum,carcinoma,-1,1 SLC17A7 57 1 NM_020309 exon7 c.G801A p.S267S CTCCTCCGAGATG . scavenged Atlas-SNP KRT12 3859 hgsc.bcm.edu 37 17 39019783 39019783 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 99.0 36.0 139.0 0.0 0.363636 0 . . none . KRT12 53 . NM_000223 exon5 c.G1049A p.R350H AAGGCGCGACGCA . PASS Atlas-SNP BRWD3 254065 hgsc.bcm.edu 37 X 80064532 80064532 + Nonsense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 123.0 83.0 253.0 1.0 0.674797 0.00395257 . . none . BRWD3 251 . NM_153252 exon3 c.C100T p.Q34X GCTCCTGCACTAG . PASS Atlas-SNP ZFX 7543 hgsc.bcm.edu 37 X 24229464 24229464 + Nonsense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 147.0 100.0 292.0 0.0 0.680272 0 . . none . ZFX 61 . NM_003410 exon10 c.C2389T p.R797X ATAATGCGACATC . PASS Atlas-SNP GRIN2A 2903 hgsc.bcm.edu 37 16 10274133 10274133 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 40.0 16.0 49.0 0.0 0.4 0 . . none GRIN2A,NS,carcinoma,0,1 GRIN2A 366 1 NM_000833 exon3 c.G136A p.V46M CTGTCACGTCGTG . PASS Atlas-SNP DRP2 1821 hgsc.bcm.edu 37 X 100497418 100497418 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 70.0 53.0 190.0 0.0 0.757143 0 . . none . DRP2 98 . NM_001939 exon8 c.C933T p.S311S GAATTCCCAGGCC . PASS Atlas-SNP ATP10D 57205 hgsc.bcm.edu 37 4 47593309 47593309 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 71.0 28.0 106.0 0.0 0.394366 0 . . none . ATP10D 168 . NM_020453 exon23 c.T4192G p.L1398V GGAAACTTATCTC . PASS Atlas-SNP BARHL2 343472 hgsc.bcm.edu 37 1 91180266 91180266 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 133.0 48.0 159.0 0.0 0.360902 0 . . none BARHL2,NS,carcinoma,+1,1 BARHL2 62 1 NM_020063 exon2 c.C673G p.P225A CAGGGGGACTCTC . PASS Atlas-SNP TNK2 10188 hgsc.bcm.edu 37 3 195605200 195605200 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 212.0 47.0 160.0 0.0 0.221698 0 . . none . TNK2 246 . NM_001010938 exon9 c.C1369T p.R457W GGGCCCGCATGTC . PASS Atlas-SNP ZNF521 25925 hgsc.bcm.edu 37 18 22669489 22669489 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 472.0 70.0 235.0 0.0 0.148305 0 . . none . ZNF521 269 . NM_015461 exon7 c.A3846C p.E1282D CTTGTCTTCTTGT . PASS Atlas-SNP MYF6 4618 hgsc.bcm.edu 37 12 81101689 81101689 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 58.0 25.0 67.0 0.0 0.431034 0 . . none MYF6,NS,carcinoma,0,1 MYF6 74 1 NM_002469 exon1 c.C191T p.A64V TCCTGGCGCCCCC . PASS Atlas-SNP DLX6 1750 hgsc.bcm.edu 37 7 96639340 96639340 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 190.0 39.0 123.0 0.0 0.205263 0 . . none . DLX6 37 . NM_005222 exon3 c.A863C p.Q288P CGATGCAGAGACC . PASS Atlas-SNP FBN1 2200 hgsc.bcm.edu 37 15 48703210 48703210 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 155.0 65.0 243.0 0.0 0.419355 0 . . none . FBN1 310 . NM_000138 exon66 c.A8593C p.K2865Q GGATTTTCATCTT . PASS Atlas-SNP FLNC 2318 hgsc.bcm.edu 37 7 128489252 128489252 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 254.0 70.0 181.0 1.0 0.275591 0.00552486 . . none FLNC,NS,carcinoma,0,1 FLNC 339 1 NM_001127487 exon29 c.G4945A p.G1649S GGCCATGGCCTGG . scavenged Atlas-SNP LRFN5 145581 hgsc.bcm.edu 37 14 42356853 42356853 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 135.0 39.0 121.0 0.0 0.288889 0 . . none LRFN5,NS,carcinoma,-1,2 LRFN5 269 2 NM_152447 exon3 c.T1025G p.L342R GAACACTTGACAT . PASS Atlas-SNP CDH20 28316 hgsc.bcm.edu 37 18 59166652 59166652 + Missense_Mutation SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 211.0 23.0 113.0 0.0 0.109005 0 . . none . CDH20 117 . NM_031891 exon2 c.C480A p.D160E CAATGACAATGAG . PASS Atlas-SNP GABRG3 2567 hgsc.bcm.edu 37 15 27777873 27777873 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 151.0 56.0 184.0 0.0 0.370861 0 . . none . GABRG3 115 . NM_033223 exon10 c.T1250G p.F417C AGAGCTTCTTCTG . PASS Atlas-SNP DPP10 57628 hgsc.bcm.edu 37 2 116257116 116257116 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 134.0 51.0 204.0 0.0 0.380597 0 . . none . DPP10 415 . NM_001178034 exon4 c.G314T p.G105V AGAATGGACATGT . PASS Atlas-SNP AGBL1 123624 hgsc.bcm.edu 37 15 87089240 87089240 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 201.0 55.0 244.0 0.0 0.273632 0 . . none AGBL1,NS,carcinoma,+1,1 AGBL1 151 1 NM_152336 exon19 c.G2555T p.C852F TTTTCTGTGACTT . PASS Atlas-SNP ADCY2 108 hgsc.bcm.edu 37 5 7709382 7709382 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 72.0 32.0 87.0 0.0 0.444444 0 . . none . ADCY2 337 . NM_020546 exon10 c.A1460C p.K487T GAGCCAAAATGAG . PASS Atlas-SNP ANK3 288 hgsc.bcm.edu 37 10 61845008 61845008 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 90.0 4.0 99.0 0.0 0.0444444 0 . . none . ANK3 703 . NM_001204404 exon32 c.G3755A p.G1252D GAAGTGCCCCCTG . PASS Atlas-SNP CHST11 50515 hgsc.bcm.edu 37 12 105150950 105150950 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 154.0 64.0 135.0 0.0 0.415584 0 . . none . CHST11 54 . NM_018413 exon3 c.A428C p.K143T GGGGGAAGTACAG . PASS Atlas-SNP TBC1D23 55773 hgsc.bcm.edu 37 3 100039768 100039768 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 85.0 28.0 76.0 0.0 0.329412 0 . . none . TBC1D23 133 . NM_001199198 exon18 c.G1971C p.K657N CTTCAAGTATGGA . PASS Atlas-SNP RGS6 9628 hgsc.bcm.edu 37 14 72976974 72976974 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 90.0 31.0 78.0 0.0 0.344444 0 . . none . RGS6 92 . NM_001204424 exon14 c.T1078C p.S360P TTCAGTTCAGAAA . PASS Atlas-SNP SPHKAP 80309 hgsc.bcm.edu 37 2 228882763 228882763 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 159.0 68.0 201.0 1.0 0.427673 0.00497512 . . none SPHKAP_ENST00000392056,NS,carcinoma,0,2 SPHKAP 750 2 NM_030623 exon7 c.C2807T p.T936M ACGACCGTGTCTG . scavenged Atlas-SNP EEF1B2 1933 hgsc.bcm.edu 37 2 207024768 207024768 + Missense_Mutation SNP A A G rs11546380 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 110.0 5.0 163.0 2.0 0.0454545 0.0122699 . . weak EEF1B2,colon,carcinoma,-1,1 EEF1B2 58 1 NM_021121 exon2 c.A65G p.K22R CGGACAAGAGCTA . scavenged Atlas-SNP YIPF7 285525 hgsc.bcm.edu 37 4 44652108 44652108 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 101.0 45.0 118.0 0.0 0.445545 0 . . none . YIPF7 33 . NM_182592 exon2 c.T82G p.L28V GTGCCAAGTTTGA . PASS Atlas-SNP ZMYM4 9202 hgsc.bcm.edu 37 1 35847205 35847205 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 128.0 33.0 122.0 1.0 0.257812 0.00819672 . . none ZMYM4,NS,carcinoma,-1,1 ZMYM4 143 1 NM_005095 exon9 c.T1415G p.F472C CCTGCTTCTCTAA . scavenged Atlas-SNP DSCAM 1826 hgsc.bcm.edu 37 21 41446993 41446993 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 128.0 52.0 114.0 0.0 0.40625 0 . . none DSCAM,NS,carcinoma,-1,1 DSCAM 347 1 NM_001271534 exon27 c.G4859A p.R1620Q TCCCGCCGCCTCC . PASS Atlas-SNP PCDHGB2 56103 hgsc.bcm.edu 37 5 140741034 140741034 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 145.0 92.0 158.0 0.0 0.634483 0 . . none . PCDHGB2 196 . NM_018923 exon1 c.C1332T p.D444D CTCCGACGTCAAC . PASS Atlas-SNP CHKA 1119 hgsc.bcm.edu 37 11 67833918 67833918 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 164.0 57.0 133.0 0.0 0.347561 0 . . none . CHKA 41 . NM_001277 exon8 c.G994A p.E332K TGTATTCGAAATC . PASS Atlas-SNP CSDE1 7812 hgsc.bcm.edu 37 1 115276720 115276720 + Nonsense_Mutation SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 34.0 16.0 44.0 0.0 0.470588 0 . . none . CSDE1 145 . NM_001242891 exon9 c.G739T p.E247X CTCTTTCAATAAA . PASS Atlas-SNP OTOP1 133060 hgsc.bcm.edu 37 4 4199791 4199791 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 150.0 64.0 144.0 0.0 0.426667 0 . . none . OTOP1 118 . NM_177998 exon5 c.C770T p.P257L AGAGTTGGGGGCG . PASS Atlas-SNP GPC6 10082 hgsc.bcm.edu 37 13 93879793 93879793 + Silent SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 66.0 26.0 86.0 0.0 0.393939 0 . . none . GPC6 102 . NM_005708 exon1 c.G84T p.R28R GGCTCGGAGCTGC . PASS Atlas-SNP SLC35G6 643664 hgsc.bcm.edu 37 17 7386301 7386301 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 132.0 11.0 141.0 2.0 0.0833333 0.0141844 . . none POLR2A_ENST00000412468,NS,carcinoma,0,1 . . 1 NM_001102614 exon2 c.A998C p.E333A AGAGGGAAGGGAA . scavenged Atlas-SNP BMP5 653 hgsc.bcm.edu 37 6 55739470 55739470 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 146.0 31.0 116.0 0.0 0.212329 0 . . none . BMP5 94 . NM_021073 exon1 c.C194A p.P65H GGTCTGGGTCTGT . PASS Atlas-SNP SLC44A2 57153 hgsc.bcm.edu 37 19 10748564 10748564 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 237.0 114.0 274.0 0.0 0.481013 0 . . none . SLC44A2 56 . NM_020428 exon18 c.G1728A p.S576S CACCTCGGCCAGG . PASS Atlas-SNP FBLN1 2192 hgsc.bcm.edu 37 22 45970519 45970519 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 46.0 4.0 76.0 0.0 0.0869565 0 . . none . FBLN1 143 . NM_006486 exon15 c.T1826C p.F609S GCGAGTTCACCCG . PASS Atlas-SNP APC 324 hgsc.bcm.edu 37 5 112173494 112173494 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 76.0 23.0 91.0 0.0 0.302632 0 . . none APC,NS,carcinoma,-2,1 APC 4158 1 NM_001127510 exon17 c.G2203A p.A735T AGGCCTGCGAAGT . PASS Atlas-SNP PGPEP1L 145814 hgsc.bcm.edu 37 15 99511839 99511839 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 178.0 47.0 137.0 0.0 0.264045 0 . . none PGPEP1L,NS,carcinoma,-1,1 PGPEP1L 26 1 NM_001102612 exon5 c.G459A p.G153G CGGGAGCCCGCGC . PASS Atlas-SNP OR4C46 119749 hgsc.bcm.edu 37 11 51516008 51516008 + Missense_Mutation SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 199.0 77.0 238.0 0.0 0.386935 0 . . none . OR4C46 96 . NM_001004703 exon1 c.A727G p.T243A CACATCACGGTTG . PASS Atlas-SNP ZNF436 80818 hgsc.bcm.edu 37 1 23689381 23689381 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 222.0 91.0 249.0 1.0 0.40991 0.00401606 . . none . ZNF436 49 . NM_001077195 exon4 c.C494A p.P165H TTATAGGGTCTGT . PASS Atlas-SNP HN1 51155 hgsc.bcm.edu 37 17 73132201 73132201 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 128.0 49.0 172.0 0.0 0.382812 0 . . none . HN1 17 . NM_016185 exon5 c.G461A p.G154D AGCTAACCCAAGA . PASS Atlas-SNP COX2 5743 hgsc.bcm.edu 37 MT 7818 7818 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 15.0 14.0 5.0 0.0 0.933333 0 . . none . . . . ENST00000361739 exon1 c.T233C p.L78P TCGCCCTCCCATC . PASS Atlas-SNP C11orf86 254439 hgsc.bcm.edu 37 11 66743072 66743072 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 63.0 33.0 61.0 0.0 0.52381 0 . . none . C11orf86 7 . NM_001136485 exon1 c.G239C p.R80P CCCAGCGAAGAGG . PASS Atlas-SNP MEX3A 92312 hgsc.bcm.edu 37 1 156047300 156047300 + Missense_Mutation SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 108.0 7.0 140.0 0.0 0.0648148 0 . . none . MEX3A 33 . NM_001093725 exon2 c.T628C p.S210P CGCCTGACTTGTT . PASS Atlas-SNP EPS8L2 64787 hgsc.bcm.edu 37 11 726366 726366 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 154.0 67.0 125.0 0.0 0.435065 0 . . none . EPS8L2 42 . NM_022772 exon19 c.G1816A p.A606T ATCAGGGCGCAGC . PASS Atlas-SNP SLC35E3 55508 hgsc.bcm.edu 37 12 69140524 69140524 + Nonsense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 86.0 4.0 92.0 0.0 0.0465116 0 . . none . SLC35E3 23 . NM_018656 exon1 c.C367T p.Q123X TGCTACCAGAAAA . PASS Atlas-SNP PPIP5K2 23262 hgsc.bcm.edu 37 5 102465357 102465357 + Nonsense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 40.0 4.0 39.0 0.0 0.1 0 . . none . PPIP5K2 98 . NM_015216 exon1 c.C64T p.R22X AATTATCGACATT . PASS Atlas-SNP THOC7 80145 hgsc.bcm.edu 37 3 63824125 63824125 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 263.0 74.0 264.0 0.0 0.281369 0 . . none . THOC7 24 . NM_025075 exon3 c.C188T p.S63L CCCATTGAAAATT . PASS Atlas-SNP DAGLA 747 hgsc.bcm.edu 37 11 61495668 61495668 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 94.0 37.0 126.0 0.0 0.393617 0 . . none . DAGLA 109 . NM_006133 exon7 c.G680A p.R227Q TCTTCCGGGACCT . PASS Atlas-SNP ZMYM4 9202 hgsc.bcm.edu 37 1 35847247 35847247 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 163.0 33.0 166.0 0.0 0.202454 0 . . none . ZMYM4 143 . NM_005095 exon9 c.G1457T p.C486F ACTGTTGTGAGAA . PASS Atlas-SNP OR2M2 391194 hgsc.bcm.edu 37 1 248344182 248344182 + Missense_Mutation SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 137.0 93.0 295.0 0.0 0.678832 0 . . none . OR2M2 149 . NM_001004688 exon1 c.A895G p.R299G GTGACTAGAGCAT . PASS Atlas-SNP TAAR2 9287 hgsc.bcm.edu 37 6 132938981 132938981 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 98.0 25.0 88.0 0.0 0.255102 0 . . none . TAAR2 45 . NM_001033080 exon2 c.T364G p.F122V GGTCAAAACTATA . PASS Atlas-SNP GRIN2B 2904 hgsc.bcm.edu 37 12 13716441 13716441 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 64.0 20.0 75.0 0.0 0.3125 0 . . none . GRIN2B 303 . NM_000834 exon13 c.C3731T p.A1244V TTGCAAGCCTCAC . PASS Atlas-SNP SYCP1 6847 hgsc.bcm.edu 37 1 115487569 115487569 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 120.0 42.0 137.0 0.0 0.35 0 . . none . SYCP1 149 . NM_003176 exon25 c.T2120G p.I707R ATAAAATAGCTGA . PASS Atlas-SNP HTT 3064 hgsc.bcm.edu 37 4 3129287 3129287 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 226.0 92.0 238.0 0.0 0.40708 0 . . none . HTT 221 . NM_002111 exon12 c.G1699A p.E567K ACCACCGAAGGGC . PASS Atlas-SNP MLL2 8085 hgsc.bcm.edu 37 12 49415920 49415920 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 49.0 16.0 81.0 0.0 0.326531 0 . . none . MLL2 1173 . NM_003482 exon53 c.C16427A p.S5476Y GCACAGGAATGGT . PASS Atlas-SNP IKZF2 22807 hgsc.bcm.edu 37 2 213872764 213872764 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 110.0 41.0 116.0 0.0 0.372727 0 . . none IKZF2,NS,carcinoma,+2,1 IKZF2 71 1 NM_016260 exon8 c.A901G p.M301V AGTTCATATCAAA . PASS Atlas-SNP OR5H1 26341 hgsc.bcm.edu 37 3 97852211 97852211 + Missense_Mutation SNP G G A rs72926074 bycluster;byfrequency;by1000genomes TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 204.0 11.0 268.0 0.0 0.0539216 0 G|0.981;A|0.019 0.019 strong . OR5H1 71 . NM_001005338 exon1 c.G670A p.A224T CTCTTCGCAATCT . PASS Atlas-SNP DPYSL5 56896 hgsc.bcm.edu 37 2 27163001 27163001 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 65.0 20.0 58.0 0.0 0.307692 0 . . none . DPYSL5 69 . NM_001253724 exon9 c.C1050T p.G350G GAGTGGCGTGCAG . PASS Atlas-SNP MST1 4485 hgsc.bcm.edu 37 3 49723296 49723296 + Missense_Mutation SNP G G A rs80308386 byfrequency TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 112.0 10.0 119.0 0.0 0.0892857 0 G|0.375;A|0.625 0.625 strong MST1,trunk,malignant_melanoma,0,3 MST1 84 3 NM_020998 exon10 c.C1247T p.P416L CACTGCGGCTTGT . scavenged Atlas-SNP PROM2 150696 hgsc.bcm.edu 37 2 95953995 95953995 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 68.0 3.0 79.0 0.0 0.0441176 0 . . none PROM2,NS,carcinoma,-1,1 PROM2 78 1 NM_001165977 exon21 c.G2281A p.G761R CTCTCCGGAGCCC . scavenged Atlas-SNP MARCH7 64844 hgsc.bcm.edu 37 2 160599591 160599591 + Missense_Mutation SNP C C G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 143.0 62.0 147.0 0.0 0.433566 0 . . none . MARCH7 48 . NM_022826 exon3 c.C173G p.S58C CAGCATCTGCGTC . PASS Atlas-SNP RETSAT 54884 hgsc.bcm.edu 37 2 85577909 85577909 + Silent SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 124.0 46.0 140.0 0.0 0.370968 0 . . none . RETSAT 56 . NM_017750 exon3 c.G591T p.L197L CTTAACCAGCTTT . PASS Atlas-SNP SAMHD1 25939 hgsc.bcm.edu 37 20 35559188 35559188 + Missense_Mutation SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 91.0 44.0 114.0 0.0 0.483516 0 . . none . SAMHD1 62 . NM_015474 exon5 c.G600T p.Q200H AGCAATCTGAACA . PASS Atlas-SNP SERPINB2 5055 hgsc.bcm.edu 37 18 61562516 61562516 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 182.0 35.0 125.0 0.0 0.192308 0 . . none . SERPINB2 63 . NM_002575 exon3 c.G187T p.V63L AATGAAGTGGGAG . PASS Atlas-SNP DCHS1 8642 hgsc.bcm.edu 37 11 6646497 6646497 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 52.0 25.0 77.0 0.0 0.480769 0 . . none . DCHS1 277 . NM_003737 exon19 c.G7078A p.A2360T GGTTGGCACGGCC . PASS Atlas-SNP TDRD6 221400 hgsc.bcm.edu 37 6 46658993 46658993 + Missense_Mutation SNP A A C rs138212613 alternate_allele TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 127.0 38.0 95.0 1.0 0.299213 0.0105263 A|1.000;G|0.000 . alt TDRD6,NS,carcinoma,0,1 TDRD6 205 1 NM_001168359 exon1 c.A3128C p.K1043T TTGCCAAGTATAC . scavenged Atlas-SNP SYNJ2 8871 hgsc.bcm.edu 37 6 158504550 158504550 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 92.0 29.0 77.0 0.0 0.315217 0 . . none . SYNJ2 111 . NM_003898 exon21 c.G2955A p.M985I CAGCATGGCCCCC . PASS Atlas-SNP ZSWIM4 65249 hgsc.bcm.edu 37 19 13915887 13915887 + Missense_Mutation SNP A A C rs199644245 by1000genomes TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 39.0 16.0 24.0 0.0 0.410256 0 A|1.000;C|0.000 0.000 strong . ZSWIM4 69 . NM_023072 exon3 c.A637C p.T213P CATCACACTGAGG . PASS Atlas-SNP ALG10 84920 hgsc.bcm.edu 37 12 34179242 34179242 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 292.0 111.0 343.0 0.0 0.380137 0 . . none . ALG10 53 . NM_032834 exon3 c.G814A p.G272S GTTAATGGTGGAA . PASS Atlas-SNP PTPN21 11099 hgsc.bcm.edu 37 14 88951488 88951488 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 89.0 34.0 138.0 0.0 0.382022 0 . . none . PTPN21 113 . NM_007039 exon12 c.A1010G p.Y337C ATCACGTAGGGCT . PASS Atlas-SNP OCRL 4952 hgsc.bcm.edu 37 X 128709154 128709154 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 105.0 86.0 136.0 1.0 0.819048 0.00735294 . . none . OCRL 117 . NM_000276 exon16 c.T1640G p.F547C AAGTCTTTGAAGA . PASS Atlas-SNP THSD7A 221981 hgsc.bcm.edu 37 7 11509616 11509616 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 85.0 28.0 79.0 0.0 0.329412 0 . . none THSD7A,mouth,carcinoma,+1,1 THSD7A 219 1 NM_015204 exon9 c.C2258A p.P753H CTTTCAGGACATC . PASS Atlas-SNP SEPT6 23157 hgsc.bcm.edu 37 X 118797638 118797638 + Nonsense_Mutation SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 50.0 32.0 107.0 0.0 0.64 0 . . none . SEPT6 53 . NM_145802 exon3 c.G148T p.E50X CTGTCTCTCCTGA . PASS Atlas-SNP OR5H15 403274 hgsc.bcm.edu 37 3 97888289 97888289 + Missense_Mutation SNP G G C rs140807945 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 292.0 23.0 209.0 0.0 0.0787671 0 G|0.999;C|0.001 0.001 weak OR5H15,colon,carcinoma,0,2 OR5H15 70 2 NM_001005515 exon1 c.G746C p.C249S CTGTCTGTTTATA . PASS Atlas-SNP COL8A1 1295 hgsc.bcm.edu 37 3 99514003 99514003 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 77.0 31.0 43.0 0.0 0.402597 0 . . none . COL8A1 68 . NM_001850 exon5 c.G1258A p.G420R ATTGTAGGGCCAC . PASS Atlas-SNP SUPT5H 6829 hgsc.bcm.edu 37 19 39948337 39948337 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 179.0 72.0 160.0 0.0 0.402235 0 . . none . SUPT5H 119 . NM_001130825 exon4 c.C264T p.D88D TGAGGACGAGGAC . PASS Atlas-SNP MX1 4599 hgsc.bcm.edu 37 21 42817373 42817373 + Splice_Site SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 60.0 21.0 74.0 0.0 0.35 0 . . none . MX1 58 . NM_001144925 exon14 c.1009-2A>G . TTCCTCAGAAATC . PASS Atlas-SNP ANKRD29 147463 hgsc.bcm.edu 37 18 21197729 21197729 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 177.0 28.0 85.0 0.0 0.158192 0 . . none . ANKRD29 24 . NM_173505 exon8 c.G690A p.L230L TTTAAGCAACTCT . PASS Atlas-SNP ATP13A5 344905 hgsc.bcm.edu 37 3 193051546 193051546 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 112.0 29.0 80.0 0.0 0.258929 0 . . none . ATP13A5 171 . NM_198505 exon11 c.A1265G p.Y422C CCATGGTACATAT . PASS Atlas-SNP NFIB 4781 hgsc.bcm.edu 37 9 14307015 14307015 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 140.0 44.0 172.0 0.0 0.314286 0 . . none . NFIB 91 . NM_001190738 exon2 c.T613G p.F205V CCAAAAACAAATC . PASS Atlas-SNP ACOX1 51 hgsc.bcm.edu 37 17 73944495 73944495 + Missense_Mutation SNP C C T rs369561903 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 58.0 3.0 74.0 0.0 0.0517241 0 . . weak ACOX1_ENST00000301608,caecum,carcinoma,-1,2 ACOX1 85 2 NM_007292 exon13 c.G1772A p.R591H TTTACACGCTGGT . scavenged Atlas-SNP GULP1 51454 hgsc.bcm.edu 37 2 189405948 189405948 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 96.0 39.0 135.0 0.0 0.40625 0 . . none . GULP1 35 . NM_016315 exon7 c.G302A p.C101Y CTTTTTGTGCAGA . PASS Atlas-SNP ARPP21 10777 hgsc.bcm.edu 37 3 35758809 35758809 + Missense_Mutation SNP A A T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 120.0 37.0 130.0 0.0 0.308333 0 . . none . ARPP21 153 . NM_016300 exon13 c.A955T p.N319Y GACAGTAACATAT . PASS Atlas-SNP LRP1B 53353 hgsc.bcm.edu 37 2 141079638 141079638 + Silent SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 127.0 54.0 166.0 0.0 0.425197 0 . . none . LRP1B 1315 . NM_018557 exon82 c.T12534C p.D4178D TGCTAAATCCAAG . PASS Atlas-SNP SH3TC1 54436 hgsc.bcm.edu 37 4 8224646 8224646 + Nonsense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 95.0 45.0 125.0 0.0 0.473684 0 . . none . SH3TC1 105 . NM_018986 exon10 c.C1192T p.Q398X GCCAGGCAGTTGC . PASS Atlas-SNP DUSP27 92235 hgsc.bcm.edu 37 1 167097477 167097477 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 88.0 41.0 99.0 0.0 0.465909 0 . . none . DUSP27 235 . NM_001080426 exon5 c.C3109T p.P1037S GAGAGCCCAGAGC . PASS Atlas-SNP MIPEP 4285 hgsc.bcm.edu 37 13 24436455 24436455 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 133.0 48.0 212.0 0.0 0.360902 0 . . none . MIPEP 53 . NM_005932 exon9 c.A1039G p.N347D GAGGATTCAGTTT . PASS Atlas-SNP ZNF691 51058 hgsc.bcm.edu 37 1 43317125 43317125 + Missense_Mutation SNP C C T rs201360083 by1000genomes TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 66.0 4.0 68.0 0.0 0.0606061 0 C|1.000;T|0.000 0.000 strong . ZNF691 30 . NM_001242739 exon4 c.C589T p.R197W GGCAAGCGGCCAT . PASS Atlas-SNP EYA4 2070 hgsc.bcm.edu 37 6 133836535 133836535 + Silent SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 94.0 20.0 82.0 0.0 0.212766 0 . . none EYA4_ENST00000355167,NS,carcinoma,+2,2 EYA4 196 2 NM_172105 exon17 c.A1578G p.L526L CTGGCTAACAAAT . PASS Atlas-SNP CCDC37 348807 hgsc.bcm.edu 37 3 126142198 126142198 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 145.0 42.0 154.0 0.0 0.289655 0 . . none . CCDC37 69 . NM_182628 exon12 c.G1113A p.E371E GCAGGAGGACACC . PASS Atlas-SNP P2RY8 286530 hgsc.bcm.edu 37 X 1584851 1584851 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 48.0 35.0 87.0 0.0 0.729167 0 . . none . P2RY8 53 . NM_178129 exon2 c.C601G p.L201V GGAACAGCAGGAT . PASS Atlas-SNP PITPNM3 83394 hgsc.bcm.edu 37 17 6367558 6367558 + Silent SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 77.0 25.0 140.0 0.0 0.324675 0 . . none PITPNM3,colon,carcinoma,-1,1 PITPNM3 91 1 NM_031220 exon16 c.C2088G p.R696R TGTGATGCGACCA . PASS Atlas-SNP RYR2 6262 hgsc.bcm.edu 37 1 237580416 237580416 + Silent SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 63.0 22.0 65.0 0.0 0.349206 0 . . none RYR2,NS,carcinoma,-1,2 RYR2 1273 2 NM_001035 exon11 c.A841C p.R281R ACGCTAAGAGTTG . PASS Atlas-SNP PRRT4 401399 hgsc.bcm.edu 37 7 127992592 127992592 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 87.0 23.0 51.0 0.0 0.264368 0 . . none . PRRT4 31 . NM_001174164 exon6 c.C1018G p.P340A GCCTCGGCGCCTC . PASS Atlas-SNP ETS2 2114 hgsc.bcm.edu 37 21 40194761 40194761 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 40.0 23.0 53.0 0.0 0.575 0 . . none ETS2_ENST00000360214,caecum,carcinoma,-1,2 ETS2 87 2 NM_001256295 exon11 c.C1778T p.T593M GGTTCACGCCCGA . PASS Atlas-SNP HERC5 51191 hgsc.bcm.edu 37 4 89427002 89427002 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 173.0 68.0 207.0 0.0 0.393064 0 . . none . HERC5 114 . NM_016323 exon23 c.C3048T p.A1016A AGAAGCCATCAAC . PASS Atlas-SNP ADORA1 134 hgsc.bcm.edu 37 1 203134499 203134499 + Missense_Mutation SNP C C T rs145647777 bycluster;byfrequency TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 128.0 60.0 157.0 0.0 0.46875 0 C|1.000;T|0.000 0.000 strong . ADORA1 62 . NM_001048230 exon3 c.C452T p.A151V TGAGTGCGGTGGA . PASS Atlas-SNP CNTNAP4 85445 hgsc.bcm.edu 37 16 76350339 76350339 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 126.0 54.0 150.0 0.0 0.428571 0 . . none . CNTNAP4 600 . NM_138994 exon2 c.T40G p.L14V TCTGCCTTGCCTC . PASS Atlas-SNP ARMCX5 64860 hgsc.bcm.edu 37 X 101858511 101858511 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 78.0 4.0 166.0 0.0 0.0512821 0 . . none . ARMCX5 55 . NM_022838 exon3 c.C1442T p.P481L TTGCACCCTTTAA . PASS Atlas-SNP TRPM6 140803 hgsc.bcm.edu 37 9 77473596 77473596 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 73.0 46.0 199.0 0.0 0.630137 0 . . none . TRPM6 377 . NM_017662 exon2 c.A102C p.K34N AGGATTTTTTGAG . PASS Atlas-SNP CRTC3 64784 hgsc.bcm.edu 37 15 91172567 91172567 + Missense_Mutation SNP G G A rs140158187 bycluster;byfrequency;by1000genomes TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 250.0 70.0 169.0 0.0 0.28 0 G|0.996;A|0.004 0.004 strong . CRTC3 47 . NM_022769 exon11 c.G1069A p.A357T CCCAACGCATCTG . PASS Atlas-SNP DNAH1 25981 hgsc.bcm.edu 37 3 52398997 52398997 + Missense_Mutation SNP G G A rs377201322 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 103.0 35.0 94.0 0.0 0.339806 0 . . weak DNAH1_ENST00000420323,NS,carcinoma,0,4 DNAH1 534 4 NM_015512 exon34 c.G5480A p.R1827H CCATCCGCGAGGC . PASS Atlas-SNP BIRC2 329 hgsc.bcm.edu 37 11 102248352 102248352 + Missense_Mutation SNP C C G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 75.0 25.0 77.0 0.0 0.333333 0 . . none . BIRC2 51 . NM_001256163 exon7 c.C1492G p.Q498E ATTAAACAAAAAA . PASS Atlas-SNP DMKN 93099 hgsc.bcm.edu 37 19 36002369 36002369 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 55.0 5.0 55.0 2.0 0.0909091 0.0363636 . . none DMKN_ENST00000424570,NS,carcinoma,0,3 DMKN 116 3 NM_001126058 exon5 c.G862A p.G288S TGCTGCCACCACT . scavenged Atlas-SNP ZNF519 162655 hgsc.bcm.edu 37 18 14105585 14105585 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 86.0 4.0 49.0 0.0 0.0465116 0 . . none ZNF519,NS,carcinoma,0,1 ZNF519 53 1 NM_145287 exon3 c.G954A p.K318K GAAAGGCTTCTCT . PASS Atlas-SNP G2E3 55632 hgsc.bcm.edu 37 14 31066658 31066658 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 206.0 59.0 183.0 0.0 0.286408 0 . . none . G2E3 82 . NM_017769 exon7 c.T561G p.F187L TTTCTTTAGGTGT . PASS Atlas-SNP SEMA4B 10509 hgsc.bcm.edu 37 15 90770838 90770838 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 77.0 17.0 74.0 0.0 0.220779 0 . . none . SEMA4B 51 . NM_020210 exon14 c.G1738A p.A580T TGCAGCGCGTCTT . PASS Atlas-SNP CBX6 23466 hgsc.bcm.edu 37 22 39263079 39263079 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 30.0 10.0 26.0 0.0 0.333333 0 . . none . CBX6 26 . NM_014292 exon5 c.G374A p.R125H TGGCAGCGGCGGA . PASS Atlas-SNP GGNBP2 79893 hgsc.bcm.edu 37 17 34912947 34912947 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 90.0 30.0 100.0 0.0 0.333333 0 . . none . GGNBP2 72 . NM_024835 exon4 c.G199T p.D67Y CAACAGGATCTAA . PASS Atlas-SNP THBS2 7058 hgsc.bcm.edu 37 6 169632988 169632988 + Silent SNP G G A rs148676859 bycluster TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 82.0 20.0 65.0 0.0 0.243902 0 G|1.000;A|0.000 0.000 weak . THBS2 230 . NM_003247 exon12 c.C1776T p.D592D CACCTCGTCCAGG . PASS Atlas-SNP SACS 26278 hgsc.bcm.edu 37 13 23908805 23908805 + Silent SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 117.0 46.0 125.0 0.0 0.393162 0 . . none . SACS 871 . NM_014363 exon10 c.T9210C p.V3070V GTTATAAACCAAG . PASS Atlas-SNP OR5H1 26341 hgsc.bcm.edu 37 3 97852220 97852220 + Missense_Mutation SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 211.0 19.0 255.0 0.0 0.0900474 0 . . none . OR5H1 71 . NM_001005338 exon1 c.A679G p.K227E ATCTTAAAAAAGA . PASS Atlas-SNP ANKRD33 341405 hgsc.bcm.edu 37 12 52284881 52284881 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 118.0 6.0 100.0 0.0 0.0508475 0 . . none . ANKRD33 33 . NM_182608 exon5 c.T1151C p.L384P AGTGCCTTCAGTG . PASS Atlas-SNP ZBTB20 26137 hgsc.bcm.edu 37 3 114069130 114069130 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 323.0 87.0 252.0 0.0 0.26935 0 . . none . ZBTB20 157 . NM_001164342 exon4 c.G1795A p.V599I TGTGTACGAACAT . PASS Atlas-SNP MDGA2 161357 hgsc.bcm.edu 37 14 47530650 47530650 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 228.0 53.0 203.0 0.0 0.232456 0 . . none . MDGA2 470 . NM_001113498 exon7 c.T1327G p.F443V TTTTAAACCAACT . PASS Atlas-SNP ADAMTS9 56999 hgsc.bcm.edu 37 3 64536662 64536662 + Missense_Mutation SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 208.0 52.0 184.0 0.0 0.25 0 . . none . ADAMTS9 206 . NM_182920 exon31 c.G4775T p.G1592V CGTGCCCCATGCA . PASS Atlas-SNP OR51A4 401666 hgsc.bcm.edu 37 11 4967768 4967768 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 805.0 200.0 905.0 0.0 0.248447 0 . . none . OR51A4 73 . NM_001005329 exon1 c.A563C p.K188T GCCAACTTCATGA . PASS Atlas-SNP HMGCR 3156 hgsc.bcm.edu 37 5 74655105 74655105 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 64.0 30.0 84.0 0.0 0.46875 0 . . none . HMGCR 53 . NM_000859 exon17 c.T2268G p.I756M AAACATTGTCACC . PASS Atlas-SNP TMC1 117531 hgsc.bcm.edu 37 9 75355045 75355045 + Missense_Mutation SNP A A C rs377607548 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 60.0 20.0 80.0 0.0 0.333333 0 . . weak . TMC1 87 . NM_138691 exon9 c.A373C p.K125Q GCAAAAAAATTTG . PASS Atlas-SNP KLHL14 57565 hgsc.bcm.edu 37 18 30257201 30257201 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 273.0 56.0 188.0 0.0 0.205128 0 . . none . KLHL14 92 . NM_020805 exon8 c.A1681C p.S561R GGCCACTTCGACC . PASS Atlas-SNP MAGEB16 139604 hgsc.bcm.edu 37 X 35821008 35821008 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 83.0 52.0 173.0 0.0 0.626506 0 . . none . MAGEB16 64 . NM_001099921 exon2 c.C695T p.T232M ATTTGACGGGAGT . PASS Atlas-SNP KIF1B 23095 hgsc.bcm.edu 37 1 10363223 10363223 + Silent SNP C C T rs151053483 bycluster;byfrequency;by1000genomes TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 242.0 12.0 286.0 0.0 0.0495868 0 C|0.999;T|0.001 0.001 strong . KIF1B 242 . NM_183416 exon21 c.C1980T p.D660D AAAGGACGCGGAT . PASS Atlas-SNP FAT4 79633 hgsc.bcm.edu 37 4 126239318 126239318 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 78.0 33.0 98.0 0.0 0.423077 0 . . none . FAT4 1752 . NM_024582 exon1 c.G1752A p.Q584Q TAGCCAGCCAGAA . PASS Atlas-SNP TTC7A 57217 hgsc.bcm.edu 37 2 47249048 47249048 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 81.0 4.0 78.0 0.0 0.0493827 0 . . none . TTC7A 80 . NM_020458 exon12 c.G1440A p.E480E CGGAGAGGAAGCC . PASS Atlas-SNP MUT 4594 hgsc.bcm.edu 37 6 49423828 49423828 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 208.0 10.0 193.0 0.0 0.0480769 0 . . none . MUT 70 . NM_000255 exon4 c.C876T p.L292L AGCCTGGAGTCCA . PASS Atlas-SNP CYSLTR1 10800 hgsc.bcm.edu 37 X 77529241 77529241 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 89.0 63.0 222.0 0.0 0.707865 0 . . none . CYSLTR1 59 . NM_006639 exon3 c.G3A p.M1I TTCATCCATGTTT . PASS Atlas-SNP SPTBN4 57731 hgsc.bcm.edu 37 19 41066402 41066402 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 94.0 40.0 123.0 0.0 0.425532 0 . . none . SPTBN4 213 . NM_025213 exon10 c.G2036A p.X679X TGGAATGACAACA . PASS Atlas-SNP INPP4B 8821 hgsc.bcm.edu 37 4 143003328 143003328 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 227.0 97.0 219.0 0.0 0.427313 0 . . none . INPP4B 132 . NM_003866 exon26 c.A2498C p.K833T TTCAGTTTGCGGC . PASS Atlas-SNP SNRK 54861 hgsc.bcm.edu 37 3 43345043 43345043 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 58.0 22.0 67.0 0.0 0.37931 0 . . none . SNRK 118 . NM_017719 exon3 c.C348T p.A116A CTTGGCCAAGAAG . PASS Atlas-SNP NEFL 4747 hgsc.bcm.edu 37 8 24813297 24813297 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 80.0 30.0 94.0 0.0 0.375 0 . . none . NEFL 47 . NM_006158 exon1 c.G733A p.V245M TCTCCACGGAGAT . PASS Atlas-SNP OR2M3 127062 hgsc.bcm.edu 37 1 248366819 248366819 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 180.0 116.0 384.0 1.0 0.644444 0.00260417 . . none . OR2M3 116 . NM_001004689 exon1 c.C450T p.I150I CTGGATCCTGGGC . PASS Atlas-SNP PPARG 5468 hgsc.bcm.edu 37 3 12475443 12475443 + Missense_Mutation SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 287.0 61.0 217.0 0.0 0.212544 0 . . none . PPARG 49 . NM_015869 exon7 c.C1317A p.D439E TCAAGACAACCTG . PASS Atlas-SNP SLC35G6 643664 hgsc.bcm.edu 37 17 7386300 7386300 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 134.0 12.0 142.0 2.0 0.0895522 0.0140845 . . none POLR2A_ENST00000412468,NS,carcinoma,-1,1 . . 1 NM_001102614 exon2 c.G997A p.E333K GAGAGGGAAGGGA . scavenged Atlas-SNP LINGO1 84894 hgsc.bcm.edu 37 15 77906709 77906709 + Missense_Mutation SNP C C G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 84.0 24.0 92.0 0.0 0.285714 0 . . none . LINGO1 76 . NM_032808 exon2 c.G1540C p.V514L TGCGCACATGCAG . PASS Atlas-SNP HELZ 9931 hgsc.bcm.edu 37 17 65186460 65186460 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 144.0 57.0 179.0 0.0 0.395833 0 . . none . HELZ 160 . NM_014877 exon10 c.A569G p.Q190R ATTCCTTGTTCTA . PASS Atlas-SNP TRAK1 22906 hgsc.bcm.edu 37 3 42264607 42264607 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 118.0 28.0 106.0 0.0 0.237288 0 . . none . TRAK1 188 . NM_001042646 exon16 c.G2240A p.R747Q AGGAGCGGGGCAT . PASS Atlas-SNP SCRIB 23513 hgsc.bcm.edu 37 8 144887138 144887138 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 32.0 6.0 14.0 0.0 0.1875 0 . . none SCRIB_ENST00000356994,lower_third,carcinoma,+1,2 SCRIB 192 2 NM_015356 exon20 c.C2717T p.A906V GTGCCCGCGCGGT . PASS Atlas-SNP ZMYM3 9203 hgsc.bcm.edu 37 X 70462020 70462020 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 35.0 27.0 84.0 0.0 0.771429 0 . . none . ZMYM3 137 . NM_005096 exon23 c.G3802A p.D1268N TCGTACCTCGCCC . PASS Atlas-SNP DPYS 1807 hgsc.bcm.edu 37 8 105405212 105405212 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 42.0 20.0 36.0 0.0 0.47619 0 . . none . DPYS 107 . NM_001385 exon8 c.T1243G p.S415A TTGCTGAGATAGT . PASS Atlas-SNP BSN 8927 hgsc.bcm.edu 37 3 49692749 49692749 + Silent SNP C C T rs185582385 bycluster;by1000genomes TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 254.0 68.0 192.0 0.0 0.267717 0 C|0.999;T|0.001 0.001 strong . BSN 272 . NM_003458 exon5 c.C5760T p.A1920A CCCGGCCCCCAGT . PASS Atlas-SNP PRPF40A 55660 hgsc.bcm.edu 37 2 153547487 153547487 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 85.0 5.0 100.0 0.0 0.0588235 0 . . none . PRPF40A 149 . NM_017892 exon5 c.G334A p.A112T CAGATGCTGTACC . PASS Atlas-SNP PYGL 5836 hgsc.bcm.edu 37 14 51378473 51378473 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 212.0 56.0 149.0 0.0 0.264151 0 . . none . PYGL 77 . NM_002863 exon16 c.C1944T p.N648N TCTGTAGTTCTCC . PASS Atlas-SNP LARP1 23367 hgsc.bcm.edu 37 5 154179585 154179585 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 56.0 46.0 59.0 0.0 0.821429 0 . . none . LARP1 187 . NM_015315 exon10 c.T1468C p.S490P CGGCCATCCCCAG . PASS Atlas-SNP MUC5B 727897 hgsc.bcm.edu 37 11 1253691 1253691 + Missense_Mutation SNP C C T rs56411917 bycluster;byfrequency;by1000genomes TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 96.0 42.0 101.0 0.0 0.4375 0 C|0.997;T|0.003 0.003 strong . MUC5B 473 . NM_002458 exon16 c.C1855T p.R619W TACGCCCGGCACT . PASS Atlas-SNP RAI1 10743 hgsc.bcm.edu 37 17 17701758 17701758 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 24.0 11.0 37.0 0.0 0.458333 0 . . none . RAI1 121 . NM_030665 exon3 c.C5496T p.T1832T GTGGACCGGCGGC . PASS Atlas-SNP TRPM3 80036 hgsc.bcm.edu 37 9 73477843 73477843 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 212.0 82.0 299.0 0.0 0.386792 0 . . none . TRPM3 700 . NM_001007471 exon3 c.G443A p.G148D GAATGGCCACCTC . PASS Atlas-SNP PKD1L1 168507 hgsc.bcm.edu 37 7 47876625 47876625 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 169.0 42.0 129.0 0.0 0.248521 0 . . none . PKD1L1 328 . NM_138295 exon37 c.C5837T p.P1946L GAGGAGGGCCTGC . PASS Atlas-SNP OVCH1 341350 hgsc.bcm.edu 37 12 29604411 29604411 + Silent SNP A A G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 121.0 33.0 154.0 0.0 0.272727 0 . . none . OVCH1 195 . NM_183378 exon22 c.T2622C p.S874S CACCCAAGAACAT . PASS Atlas-SNP SLC4A7 9497 hgsc.bcm.edu 37 3 27424644 27424644 + Missense_Mutation SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 109.0 22.0 104.0 0.0 0.201835 0 . . none . SLC4A7 119 . NM_003615 exon24 c.G3563T p.S1188I TCTCACCTATATT . PASS Atlas-SNP SEMA5A 9037 hgsc.bcm.edu 37 5 9066712 9066712 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 129.0 51.0 172.0 0.0 0.395349 0 . . none . SEMA5A 236 . NM_003966 exon17 c.C2120A p.T707N GGCGTGGTCTTCT . PASS Atlas-SNP PAX4 5078 hgsc.bcm.edu 37 7 127253851 127253851 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 147.0 36.0 133.0 1.0 0.244898 0.0075188 . . none PAX4,NS,carcinoma,0,1 PAX4 66 1 NM_006193 exon4 c.G497A p.R166Q ATAGTCCGATTCC . scavenged Atlas-SNP DSEL 92126 hgsc.bcm.edu 37 18 65180354 65180354 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 206.0 29.0 97.0 0.0 0.140777 0 . . none . DSEL 196 . NM_032160 exon2 c.A1522C p.N508H CATTGTTAAGGTG . PASS Atlas-SNP AATF 26574 hgsc.bcm.edu 37 17 35307529 35307529 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 127.0 50.0 116.0 0.0 0.393701 0 . . none . AATF 36 . NM_012138 exon2 c.T107C p.V36A CCAGGGTGATTGA . PASS Atlas-SNP FMNL2 114793 hgsc.bcm.edu 37 2 153463872 153463872 + Missense_Mutation SNP G G A rs377497365 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 278.0 81.0 369.0 0.0 0.291367 0 . . weak . FMNL2 75 . NM_052905 exon10 c.G896A p.R299H AACAGCGCTTTGA . PASS Atlas-SNP ZNF521 25925 hgsc.bcm.edu 37 18 22804688 22804688 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 162.0 28.0 62.0 0.0 0.17284 0 . . none ZNF521,lymph_node,lymphoid_neoplasm,0,1 ZNF521 269 1 NM_015461 exon4 c.A3194C p.Y1065S CACTTATACAGTT . PASS Atlas-SNP NXF1 10482 hgsc.bcm.edu 37 11 62564687 62564687 + Missense_Mutation SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 168.0 53.0 157.0 0.0 0.315476 0 . . none . NXF1 67 . NM_006362 exon13 c.C1146G p.N382K CTTCAAGTTTTCT . PASS Atlas-SNP MSN 4478 hgsc.bcm.edu 37 X 64955264 64955264 + Nonsense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 77.0 55.0 151.0 0.0 0.714286 0 . . none . MSN 89 . NM_002444 exon8 c.G931T p.E311X GCCCGGGAGGAGA . PASS Atlas-SNP PDE10A 10846 hgsc.bcm.edu 37 6 165848819 165848819 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 139.0 40.0 133.0 0.0 0.28777 0 . . none PDE10A,NS,carcinoma,-1,3 PDE10A 154 3 NM_001130690 exon6 c.G443A p.R148H ATGAGGCGGGGTT . PASS Atlas-SNP PCDH7 5099 hgsc.bcm.edu 37 4 30725116 30725116 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 66.0 4.0 94.0 0.0 0.0606061 0 . . none . PCDH7 215 . NM_032457 exon1 c.C2072T p.T691M ATGACACGGGGAC . PASS Atlas-SNP HIST1H1E 3008 hgsc.bcm.edu 37 6 26156929 26156929 + Missense_Mutation SNP C C G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 222.0 50.0 194.0 0.0 0.225225 0 . . none . HIST1H1E 69 . NM_005321 exon1 c.C311G p.S104C CGGGTTCCTTCAA . PASS Atlas-SNP AMY2B 280 hgsc.bcm.edu 37 1 104116508 104116508 + Missense_Mutation SNP A A T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 321.0 115.0 380.0 0.0 0.358255 0 . . none AMY2B,rectum,carcinoma,0,1 AMY2B 80 1 NM_020978 exon6 c.A692T p.N231I TGCATAATCTAAA . PASS Atlas-SNP SLC47A1 55244 hgsc.bcm.edu 37 17 19470152 19470152 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 194.0 76.0 291.0 0.0 0.391753 0 . . none . SLC47A1 55 . NM_018242 exon13 c.C1156T p.H386Y GTTTCCCACCTCT . PASS Atlas-SNP A2ML1 144568 hgsc.bcm.edu 37 12 9006740 9006740 + Silent SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 61.0 21.0 83.0 0.0 0.344262 0 . . none . A2ML1 199 . NM_144670 exon21 c.T2607C p.T869T CTTTACTATTAGT . PASS Atlas-SNP CPAMD8 27151 hgsc.bcm.edu 37 19 17039035 17039035 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 62.0 27.0 54.0 0.0 0.435484 0 . . none . CPAMD8 192 . NM_015692 exon25 c.G3295A p.G1099S CTGGACCATGGCC . PASS Atlas-SNP OR2S2 56656 hgsc.bcm.edu 37 9 35957229 35957229 + Silent SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 87.0 37.0 88.0 0.0 0.425287 0 . . none . OR2S2 46 . NM_019897 exon1 c.C867A p.T289T CATCGGGGTCACC . PASS Atlas-SNP TBC1D12 23232 hgsc.bcm.edu 37 10 96163177 96163177 + Silent SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 119.0 6.0 134.0 0.0 0.0504202 0 . . none . TBC1D12 51 . NM_015188 exon1 c.T807C p.I269I TGACATTCACTTC . PASS Atlas-SNP ARSF 416 hgsc.bcm.edu 37 X 3021805 3021805 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 109.0 72.0 226.0 1.0 0.66055 0.00442478 . . none . ARSF 97 . NM_004042 exon9 c.G1105A p.G369R ATAGGTGGAAAAG . PASS Atlas-SNP MED16 10025 hgsc.bcm.edu 37 19 879943 879943 + Missense_Mutation SNP G G C rs76403059 bycluster TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 100.0 4.0 99.0 0.0 0.04 0 . . weak MED16,colon,carcinoma,0,1 MED16 61 1 NM_005481 exon8 c.C1347G p.H449Q CTTCCCGTGGCTG . scavenged Atlas-SNP ACOX1 51 hgsc.bcm.edu 37 17 73945827 73945827 + Missense_Mutation SNP T T G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 147.0 58.0 151.0 0.0 0.394558 0 . . none . ACOX1 85 . NM_007292 exon10 c.A1450C p.T484P CTTCGGTTAGGCT . PASS Atlas-SNP MAGEC3 139081 hgsc.bcm.edu 37 X 140985325 140985325 + Missense_Mutation SNP C C A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 169.0 141.0 211.0 0.0 0.83432 0 . . none . MAGEC3 228 . NM_177456 exon5 c.C887A p.T296N TGCTCACTATACA . PASS Atlas-SNP IRAK2 3656 hgsc.bcm.edu 37 3 10251272 10251272 + Splice_Site SNP G G A rs140330791 alternate_allele TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 68.0 14.0 54.0 0.0 0.205882 0 G|1.000;C|0.000 . alt IRAK2_ENST00000256458,caecum,carcinoma,-1,2 IRAK2 113 2 NM_001570 exon4 c.425-1G>A . TTTCCAGGGTCCT . PASS Atlas-SNP SALL3 27164 hgsc.bcm.edu 37 18 76755256 76755256 + Missense_Mutation SNP G G A rs200983101 bycluster;by1000genomes TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 8.0 8.0 0.0 0.0 1 . G|0.996;A|0.004 0.004 strong . SALL3 162 . NM_171999 exon2 c.G3265A p.G1089R CCCGCCGGGCCTC . PASS Atlas-SNP TRDN 10345 hgsc.bcm.edu 37 6 123759264 123759264 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 79.0 26.0 52.0 0.0 0.329114 0 . . none . TRDN 88 . NM_001251987 exon12 c.A998G p.K333R TCTTCTTTTTCTG . PASS Atlas-SNP TCP1 6950 hgsc.bcm.edu 37 6 160208813 160208813 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 455.0 124.0 380.0 0.0 0.272527 0 . . none . TCP1 37 . NM_030752 exon3 c.C241T p.L81L CTTGCAGATCAGC . PASS Atlas-SNP GOLGA6L10 647042 hgsc.bcm.edu 37 15 82637061 82637061 + Missense_Mutation SNP C C T rs201670904 bycluster TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 4.0 4.0 0.0 0.0 1 . . . weak . GOLGA6L10 16 . NM_001164465 exon6 c.G1025A p.R342Q AGCTCCCGCAGCC . PASS Atlas-SNP ROBO3 64221 hgsc.bcm.edu 37 11 124740064 124740064 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 138.0 67.0 130.0 0.0 0.485507 0 . . none ROBO3_ENST00000397801,NS,carcinoma,0,6 ROBO3 199 6 NM_022370 exon5 c.G770T p.R257L TAGAGCGTCCCTC . PASS Atlas-SNP GPC6 10082 hgsc.bcm.edu 37 13 93879792 93879792 + Missense_Mutation SNP G G T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 66.0 26.0 87.0 0.0 0.393939 0 . . none . GPC6 102 . NM_005708 exon1 c.G83T p.R28L AGGCTCGGAGCTG . PASS Atlas-SNP IER2 9592 hgsc.bcm.edu 37 19 13264330 13264330 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 12.0 7.0 17.0 0.0 0.583333 0 . . none . IER2 14 . NM_004907 exon2 c.C330T p.C110C CGCCTGCTGTGCC . PASS Atlas-SNP HIST1H2BJ 8970 hgsc.bcm.edu 37 6 27100241 27100241 + Missense_Mutation SNP T T C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 99.0 4.0 98.0 0.0 0.040404 0 . . none . HIST1H2BJ 21 . NM_021058 exon1 c.A289G p.T97A CGGCCGTCTGGAT . PASS Atlas-SNP KALRN 8997 hgsc.bcm.edu 37 3 124385389 124385389 + Missense_Mutation SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 184.0 50.0 171.0 0.0 0.271739 0 . . none . KALRN 556 . NM_001024660 exon46 c.C6436T p.R2146C GAGAGGCGCGTGT . PASS Atlas-SNP PHRF1 57661 hgsc.bcm.edu 37 11 608546 608546 + Silent SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 97.0 39.0 98.0 0.0 0.402062 0 . . none PHRF1_ENST00000264555,NS,lymphoid_neoplasm,+1,2 PHRF1 188 2 NM_020901 exon14 c.G3087A p.S1029S GAGCTCGAGGTCA . PASS Atlas-SNP RNF133 168433 hgsc.bcm.edu 37 7 122338257 122338257 + Missense_Mutation SNP A A C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 455.0 87.0 326.0 0.0 0.191209 0 . . none . RNF133 41 . NM_139175 exon1 c.T716G p.L239R ACTCGAAGTTGGA . PASS Atlas-SNP DCC 1630 hgsc.bcm.edu 37 18 50432601 50432601 + Silent SNP C C T novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 203.0 34.0 113.0 0.0 0.167488 0 . . none DCC,NS,carcinoma,+1,1 DCC 360 1 NM_005215 exon3 c.C600T p.S200S GATCAGCCGACTC . PASS Atlas-SNP CASC3 22794 hgsc.bcm.edu 37 17 38325589 38325589 + Missense_Mutation SNP G G A novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 206.0 68.0 222.0 0.0 0.330097 0 . . none . CASC3 39 . NM_007359 exon12 c.G1978A p.V660I TCACAGGTATATG . PASS Atlas-SNP TRIO 7204 hgsc.bcm.edu 37 5 14359502 14359502 + Missense_Mutation SNP C C G novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 376.0 155.0 456.0 0.0 0.412234 0 . . none . TRIO 305 . NM_007118 exon13 c.C2253G p.N751K CCACAACAGCTCC . PASS Atlas-SNP DCHS1 8642 hgsc.bcm.edu 37 11 6643761 6643761 + Missense_Mutation SNP T T A rs368872716 TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 60.0 25.0 77.0 0.0 0.416667 0 . . weak . DCHS1 277 . NM_003737 exon21 c.A9146T p.E3049V GGGAACTCATTGA . PASS Atlas-SNP AHNAK2 113146 hgsc.bcm.edu 37 14 105418968 105418968 + Silent SNP G G C novel TCGA-FF-8042-01A-11D-2210-10 TCGA-FF-8042-10A-01D-2210-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 897a4500-6fb8-4e81-aa07-021a26d632fb 92bd05d0-5cb1-4e14-9c66-c3b020b1d9c2 183.0 67.0 236.0 0.0 0.36612 0 . . none . AHNAK2 719 . NM_138420 exon7 c.C2820G p.G940G CTTGGGGCCCTTA . PASS Atlas-SNP