Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
C6	729	hgsc.bcm.edu	37	5	41181559	41181560	+	Frame_Shift_Ins	INS	-	-	C	rs372345940		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	156.0	31.0	145.0	0.0	0.199	.	.	.	weak	.	C6	197	.	NM_001115131	exon7	c.829_830insG	p.S277fs	.	.	PASS	Pindel,Atlas-Indel
CHST4	10164	hgsc.bcm.edu	37	16	71570645	71570645	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	83.0	17.0	84.0	0.0	0.205	.	.	.	none	.	CHST4	47	.	NM_001166395	exon2	c.64delC	p.L22fs	.	.	PASS	Pindel,Atlas-Indel
AR	367	hgsc.bcm.edu	37	X	66765158	66765159	+	In_Frame_Ins	INS	-	-	GCTGCA	rs71905623	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	20.0	14.0	32.0	0.0	0.7	0	.	.	alt	.	AR	249	.	NM_000044	exon1	c.170_171insGCTGCA	p.L57delinsLLQ	.	.	PASS	Atlas-Indel
LPIN3	64900	hgsc.bcm.edu	37	20	39977298	39977299	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	56.0	12.0	40.0	0.0	0.214	.	.	.	none	.	LPIN3	69	.	NM_022896	exon4	c.328_329insG	p.W110fs	.	.	PASS	Pindel,Atlas-Indel
ZNF233	353355	hgsc.bcm.edu	37	19	44777859	44777859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	142.0	44.0	125.0	0.0	0.309859	0	.	.	none	.	ZNF233	73	.	NM_001207005	exon5	c.G1046A	p.R349Q	ATGCCCGGAGCTC	.	PASS	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	37	16	2816548	2816548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	114.0	5.0	114.0	0.0	0.0438596	0	.	.	none	SRRM2,colon,carcinoma,-1,1	SRRM2	263	1	NM_016333	exon11	c.C6019T	p.R2007C	AGGTCCCGCTCTC	.	PASS	Atlas-SNP
ALG6	29929	hgsc.bcm.edu	37	1	63867944	63867944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	66.0	4.0	89.0	0.0	0.0606061	0	.	.	none	.	ALG6	33	.	NM_013339	exon4	c.A187G	p.N63D	AGTGATAACAATT	.	PASS	Atlas-SNP
RFX7	64864	hgsc.bcm.edu	37	15	56387864	56387864	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	319.0	127.0	242.0	0.0	0.398119	0	.	.	none	.	RFX7	170	.	NM_022841	exon9	c.C2062T	p.Q688X	GTTTCTGCCCTTC	.	PASS	Atlas-SNP
CNGB3	54714	hgsc.bcm.edu	37	8	87641188	87641188	+	Missense_Mutation	SNP	C	C	T	rs77277189	bycluster;byfrequency;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	165.0	41.0	190.0	0.0	0.248485	0	C|0.997;T|0.003	0.003	strong	.	CNGB3	176	.	NM_019098	exon12	c.G1439A	p.R480Q	CAAGTCCGAACTC	.	PASS	Atlas-SNP
GRB2	2885	hgsc.bcm.edu	37	17	73321980	73321980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	41.0	11.0	57.0	0.0	0.268293	0	.	.	none	.	GRB2	33	.	NM_002086	exon4	c.A298G	p.K100E	CTTACTTGACAGA	.	PASS	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	37	3	51317590	51317590	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	228.0	64.0	175.0	0.0	0.280702	0	.	.	none	.	DOCK3	397	.	NM_004947	exon27	c.T2877C	p.H959H	CACCCATTTCCAG	.	PASS	Atlas-SNP
ZMYND15	84225	hgsc.bcm.edu	37	17	4645298	4645298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	118.0	40.0	94.0	0.0	0.338983	0	.	.	none	.	ZMYND15	87	.	NM_001136046	exon4	c.G916A	p.A306T	ACCTTTGCTTCCC	.	PASS	Atlas-SNP
TMCC2	9911	hgsc.bcm.edu	37	1	205238355	205238355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	83.0	4.0	87.0	0.0	0.0481928	0	.	.	none	.	TMCC2	89	.	NM_014858	exon3	c.A1025G	p.K342R	ACCAGAAGTCAGC	.	PASS	Atlas-SNP
HRCT1	646962	hgsc.bcm.edu	37	9	35906607	35906607	+	Missense_Mutation	SNP	G	G	C	rs201684694	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	22.0	11.0	32.0	2.0	0.5	0.0625	.	.	alt	HRCT1,NS,carcinoma,0,1	HRCT1	14	1	NM_001039792	exon1	c.G323C	p.R108P	CCCACCGCCACCA	.	scavenged	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	37	9	113259095	113259095	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	198.0	60.0	204.0	0.0	0.30303	0	.	.	none	SVEP1,colon,carcinoma,0,1	SVEP1	326	1	NM_153366	exon8	c.G1800C	p.K600N	CCTTACCTTTTCA	.	PASS	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128752802	128752802	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	127.0	46.0	131.0	1.0	0.362205	0.00763359	.	.	none	MYC_ENST00000377970,NS,carcinoma,+2,2	MYC	168	2	NM_002467	exon3	c.G963C	p.Q321H	ACATCAGCACAAC	.	scavenged	Atlas-SNP
ID3	3399	hgsc.bcm.edu	37	1	23885690	23885690	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	111.0	70.0	96.0	0.0	0.630631	0	.	.	none	ID3,NS,lymphoid_neoplasm,-1,1	ID3	29	1	NM_002167	exon1	c.C228A	p.Y76X	GAGAATGTAGTCG	.	PASS	Atlas-SNP
GPR101	83550	hgsc.bcm.edu	37	X	136112327	136112327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	48.0	33.0	48.0	0.0	0.6875	0	.	.	none	.	GPR101	96	.	NM_054021	exon1	c.G1507A	p.D503N	CAGAATCGTAGGA	.	PASS	Atlas-SNP
SRSF7	6432	hgsc.bcm.edu	37	2	38977316	38977316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	87.0	33.0	86.0	0.0	0.37931	0	.	.	none	.	SRSF7	29	.	NM_001195446	exon2	c.A49T	p.N17Y	CCAGGTTACCAAC	.	PASS	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	37	17	71431699	71431699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	69.0	3.0	101.0	1.0	0.0434783	0.00990099	.	.	none	SDK2,NS,carcinoma,+1,1	SDK2	219	1	NM_001144952	exon9	c.A1085G	p.D362G	CCCCCGTCGTTGC	.	scavenged	Atlas-SNP
LGI3	203190	hgsc.bcm.edu	37	8	22005779	22005779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	47.0	8.0	62.0	1.0	0.170213	0.016129	.	.	none	LGI3,mouth,carcinoma,-1,1	LGI3	44	1	NM_139278	exon8	c.G1541A	p.R514Q	AAGGCCCGAGGAG	.	scavenged	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	37	18	47462675	47462675	+	Silent	SNP	C	C	T	rs180849030	by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	159.0	56.0	120.0	0.0	0.352201	0	C|0.999;T|0.001	0.001	strong	MYO5B,NS,carcinoma,0,1	MYO5B	178	1	NM_001080467	exon16	c.G1950A	p.T650T	AGGTGTCGTGGCA	.	PASS	Atlas-SNP
FAM64A	54478	hgsc.bcm.edu	37	17	6352690	6352690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	78.0	5.0	68.0	0.0	0.0641026	0	.	.	none	.	FAM64A	20	.	NM_019013	exon4	c.T649C	p.S217P	AAGCTGTCCCAAG	.	PASS	Atlas-SNP
MACROD2	140733	hgsc.bcm.edu	37	20	14665585	14665585	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	139.0	51.0	140.0	0.0	0.366906	0	.	.	none	.	MACROD2	34	.	NM_080676	exon5	c.G398T	p.G133V	CATGTGGCTATGA	.	PASS	Atlas-SNP
LRIG1	26018	hgsc.bcm.edu	37	3	66432748	66432748	+	Missense_Mutation	SNP	C	C	G	rs147267806	alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	146.0	39.0	139.0	0.0	0.267123	0	C|1.000;T|0.000	.	alt	.	LRIG1	138	.	NM_015541	exon16	c.G2566C	p.V856L	TGACCACGGTTTC	.	PASS	Atlas-SNP
PLK4	10733	hgsc.bcm.edu	37	4	128804641	128804641	+	Silent	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	71.0	3.0	88.0	0.0	0.0422535	0	.	.	none	PLK4,NS,carcinoma,+1,1	PLK4	65	1	NM_014264	exon4	c.A270G	p.E90E	ATTAGAAATGTGC	.	scavenged	Atlas-SNP
PKD1L1	168507	hgsc.bcm.edu	37	7	47873941	47873941	+	Missense_Mutation	SNP	C	C	T	rs17131834	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	81.0	4.0	81.0	0.0	0.0493827	0	C|0.978;T|0.022	0.022	strong	.	PKD1L1	328	.	NM_138295	exon40	c.G6170A	p.R2057H	ACCTTGCGTGGCT	.	PASS	Atlas-SNP
TPTE	7179	hgsc.bcm.edu	37	21	10971306	10971306	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	124.0	15.0	105.0	0.0	0.120968	0	.	.	none	.	TPTE	513	.	NM_199259	exon5	c.C51T	p.L17L	GGGGCCGAGCTCA	.	PASS	Atlas-SNP
ZBTB7C	201501	hgsc.bcm.edu	37	18	45566798	45566798	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	171.0	63.0	145.0	0.0	0.368421	0	.	.	none	.	ZBTB7C	73	.	NM_001039360	exon2	c.C681T	p.I227I	AGATTCGATGGAG	.	PASS	Atlas-SNP
ITGA2	3673	hgsc.bcm.edu	37	5	52351856	52351856	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	102.0	5.0	79.0	0.0	0.0490196	0	.	.	none	.	ITGA2	211	.	NM_002203	exon9	c.T973C	p.L325L	AAAAATTTAATAA	.	PASS	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128750625	128750625	+	Missense_Mutation	SNP	G	G	C	rs121918684		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	74.0	25.0	71.0	0.0	0.337838	0	.	.	weak	MYC_ENST00000377970,NS,lymphoid_neoplasm,0,8	MYC	168	8	NM_002467	exon2	c.G162C	p.E54D	GAGCGAGCTGCAG	.	PASS	Atlas-SNP
ASIC5	51802	hgsc.bcm.edu	37	4	156784634	156784634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	96.0	4.0	86.0	0.0	0.0416667	0	.	.	none	.	.	.	.	NM_017419	exon2	c.G313A	p.E105K	GGAACTCCATCTT	.	PASS	Atlas-SNP
MTMR7	9108	hgsc.bcm.edu	37	8	17206499	17206499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	71.0	3.0	58.0	0.0	0.0422535	0	.	.	none	MTMR7,NS,carcinoma,0,1	MTMR7	75	1	NM_004686	exon5	c.G560A	p.R187Q	GGAAATCGCCGTC	.	scavenged	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	37	8	145738768	145738768	+	Splice_Site	SNP	G	G	C	rs199605511	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	95.0	11.0	117.0	0.0	0.115789	0	.	.	weak	.	RECQL4	75	.	NM_004260	exon15	c.2296+1C>G	.	CCACCCGGCAACT	.	PASS	Atlas-SNP
HIST1H2AC	8334	hgsc.bcm.edu	37	6	26124688	26124688	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	265.0	59.0	276.0	0.0	0.222642	0	.	.	none	.	HIST1H2AC	29	.	NM_003512	exon1	c.G228A	p.K76K	CAAGAAGACTCGC	.	PASS	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	37	1	156941496	156941496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	61.0	17.0	68.0	0.0	0.278689	0	.	.	none	.	ARHGEF11	168	.	NM_198236	exon8	c.G695T	p.G232V	ACTGAGCCACCAG	.	PASS	Atlas-SNP
ITGA10	8515	hgsc.bcm.edu	37	1	145528314	145528314	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	235.0	63.0	199.0	0.0	0.268085	0	.	.	none	.	ITGA10	131	.	NM_003637	exon4	c.T335A	p.L112Q	TGTCTCTGTTAGA	.	PASS	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128752907	128752907	+	Silent	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	144.0	56.0	124.0	0.0	0.388889	0	.	.	none	.	MYC	168	.	NM_002467	exon3	c.A1068G	p.K356K	CCGAAAATGCACC	.	PASS	Atlas-SNP
MAPK8	5599	hgsc.bcm.edu	37	10	49618087	49618087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	154.0	7.0	144.0	0.0	0.0454545	0	.	.	none	.	MAPK8	118	.	NM_139047	exon4	c.A326G	p.E109G	TCATGGAGCTCAT	.	PASS	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	37	5	115351066	115351066	+	Silent	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	45.0	3.0	46.0	2.0	0.0666667	0.0434783	.	.	none	FLJ90650,caecum,carcinoma,0,1	.	.	1	NM_173800	exon17	c.T2568A	p.I856I	AAAGATTCAACTT	.	scavenged	Atlas-SNP
CWH43	80157	hgsc.bcm.edu	37	4	48990495	48990495	+	Silent	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	66.0	4.0	40.0	0.0	0.0606061	0	.	.	none	.	CWH43	101	.	NM_025087	exon2	c.A45G	p.G15G	TGTAGGATGTGTT	.	PASS	Atlas-SNP
CASP8	841	hgsc.bcm.edu	37	2	202141597	202141597	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	224.0	16.0	173.0	0.0	0.0714286	0	.	.	none	CASP8_ENST00000358485,NS,carcinoma,+1,3	CASP8	272	3	NM_001080125	exon7	c.T885A	p.C295X	ATACTGTCTGATC	.	PASS	Atlas-SNP
CEP41	95681	hgsc.bcm.edu	37	7	130067800	130067800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	64.0	25.0	66.0	0.0	0.390625	0	.	.	none	.	.	.	.	NM_001257159	exon2	c.C93A	p.D31E	ACCAGTGTCCAGT	.	PASS	Atlas-SNP
ZNF438	220929	hgsc.bcm.edu	37	10	31137635	31137635	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	237.0	60.0	202.0	0.0	0.253165	0	.	.	none	.	ZNF438	90	.	NM_182755	exon7	c.A1699C	p.M567L	AACACATGAGTTT	.	PASS	Atlas-SNP
CHIT1	1118	hgsc.bcm.edu	37	1	203186088	203186088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	54.0	11.0	55.0	0.0	0.203704	0	.	.	none	CHIT1,NS,carcinoma,+2,1	CHIT1	61	1	NM_003465	exon11	c.C1330T	p.R444W	ACAGCCGCCCCGC	.	PASS	Atlas-SNP
MITF	4286	hgsc.bcm.edu	37	3	69928321	69928321	+	Silent	SNP	G	G	A	rs199697494	by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	93.0	30.0	107.0	0.0	0.322581	0	G|1.000;A|0.000	0.000	strong	.	MITF	156	.	NM_198159	exon2	c.G141A	p.P47P	GCCTCCGATAAGC	.	PASS	Atlas-SNP
SEPT5	5413	hgsc.bcm.edu	37	22	19709201	19709201	+	Silent	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	108.0	5.0	104.0	0.0	0.0462963	0	.	.	none	.	SEPT5	32	.	NM_001009939	exon8	c.G783T	p.V261V	CACGGTGGTGGAG	.	PASS	Atlas-SNP
ALDOB	229	hgsc.bcm.edu	37	9	104189813	104189813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	125.0	27.0	105.0	0.0	0.216	0	.	.	none	.	ALDOB	69	.	NM_000035	exon5	c.T491C	p.I164T	TCCTGGATAGCGA	.	PASS	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128751021	128751021	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	59.0	16.0	65.0	0.0	0.271186	0	.	.	none	.	MYC	168	.	NM_002467	exon2	c.C558T	p.C186C	CGTCTGCTCCACC	.	PASS	Atlas-SNP
RHPN2	85415	hgsc.bcm.edu	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	38.0	4.0	23.0	0.0	0.105263	0	.	.	none	RHPN2,face,carcinoma,0,2	RHPN2	107	2	NM_033103	exon3	c.G217A	p.V73M	GCCGCACTTGCTC	.	scavenged	Atlas-SNP
MACROD2	140733	hgsc.bcm.edu	37	20	16021849	16021849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	93.0	4.0	77.0	0.0	0.0430108	0	.	.	none	.	MACROD2	34	.	NM_080676	exon16	c.C1157T	p.P386L	CAGCTCCAGGCGA	.	PASS	Atlas-SNP
NEB	4703	hgsc.bcm.edu	37	2	152432215	152432215	+	Silent	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	159.0	52.0	135.0	0.0	0.327044	0	.	.	none	.	NEB	1697	.	NM_001271208	exon107	c.G17007T	p.V5669V	ATTGCTCACATTA	.	PASS	Atlas-SNP
MN1	4330	hgsc.bcm.edu	37	22	28194930	28194930	+	Silent	SNP	C	C	T	rs45463091	byfrequency	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	36.0	3.0	41.0	1.0	0.0833333	0.0243902	C|0.958;T|0.042	0.042	strong	MN1,colon,carcinoma,0,4	MN1	122	4	NM_002430	exon1	c.G1602A	p.Q534Q	CTGCTGCTGTTGC	.	scavenged	Atlas-SNP
SRSF7	6432	hgsc.bcm.edu	37	2	38976739	38976739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	280.0	91.0	295.0	0.0	0.325	0	.	.	none	.	SRSF7	29	.	NM_001195446	exon3	c.C318G	p.C106W	CTCATAGCATCTA	.	PASS	Atlas-SNP
KRTAP26-1	388818	hgsc.bcm.edu	37	21	31692282	31692282	+	Silent	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	157.0	57.0	165.0	0.0	0.363057	0	.	.	none	KRTAP26-1,NS,carcinoma,0,1	KRTAP26-1	58	1	NM_203405	exon1	c.C72A	p.L24L	GGAGGTGAGAGGA	.	PASS	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4681129	4681129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	93.0	25.0	92.0	0.0	0.268817	0	.	.	none	.	ITPR1	659	.	NM_001099952	exon6	c.T341C	p.V114A	GGACCGTAATCCA	.	PASS	Atlas-SNP
FRMD3	257019	hgsc.bcm.edu	37	9	85863362	85863362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	68.0	25.0	65.0	0.0	0.367647	0	.	.	none	FRMD3,NS,carcinoma,+1,1	FRMD3	96	1	NM_174938	exon14	c.G1265A	p.R422Q	TACTCCCGGGCTG	.	PASS	Atlas-SNP
TMEM30A	55754	hgsc.bcm.edu	37	6	75969072	75969072	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	140.0	51.0	199.0	0.0	0.364286	0	.	.	none	TMEM30A,caecum,carcinoma,0,2	TMEM30A	40	2	NM_018247	exon5	c.C676T	p.R226X	TAAATCGTTCTTC	.	PASS	Atlas-SNP
CASP8	841	hgsc.bcm.edu	37	2	202141586	202141586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	230.0	19.0	176.0	0.0	0.0826087	0	.	.	none	CASP8_ENST00000358485,NS,carcinoma,0,6	CASP8	272	6	NM_001080125	exon7	c.C874T	p.R292W	AAACCTCGGGGAT	.	PASS	Atlas-SNP
DLG2	1740	hgsc.bcm.edu	37	11	84027956	84027956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	73.0	23.0	50.0	0.0	0.315068	0	.	.	none	.	DLG2	448	.	NM_001206769	exon1	c.G233A	p.R78Q	CTTTTCCGCACAC	.	PASS	Atlas-SNP
TMEM184A	202915	hgsc.bcm.edu	37	7	1590488	1590488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	62.0	4.0	62.0	0.0	0.0645161	0	.	.	none	.	TMEM184A	35	.	NM_001097620	exon3	c.A350G	p.Y117C	TAGACGTAGTACT	.	PASS	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	37	11	12281376	12281376	+	Missense_Mutation	SNP	G	G	A	rs2270515	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	161.0	56.0	131.0	0.0	0.347826	0	G|0.994;A|0.006	0.006	strong	MICAL2,NS,carcinoma,+1,1	MICAL2	114	1	NM_014632	exon26	c.G3266A	p.R1089Q	CCCCTCGGAGAGA	.	PASS	Atlas-SNP
CSPG4	1464	hgsc.bcm.edu	37	15	75980270	75980270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	203.0	101.0	124.0	0.0	0.497537	0	.	.	none	.	CSPG4	175	.	NM_001897	exon3	c.G3136A	p.D1046N	CAGCATCGCTGAA	.	PASS	Atlas-SNP
IFITM3	10410	hgsc.bcm.edu	37	11	320723	320723	+	Missense_Mutation	SNP	C	C	T	rs56227617		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	116.0	12.0	78.0	2.0	0.103448	0.025641	.	.	weak	IFITM3,brain,glioma,0,1	IFITM3	132	1	NM_021034	exon1	c.G91A	p.V31M	CCAGCACAGCCAC	.	scavenged	Atlas-SNP
FZR1	51343	hgsc.bcm.edu	37	19	3532490	3532490	+	Missense_Mutation	SNP	G	G	A	rs371550562		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	83.0	4.0	143.0	0.0	0.0481928	0	.	.	weak	.	FZR1	42	.	NM_001136198	exon10	c.G1084A	p.A362T	GCCATCGCCTGGT	.	PASS	Atlas-SNP
RBM27	54439	hgsc.bcm.edu	37	5	145631422	145631422	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	82.0	4.0	70.0	0.0	0.0487805	0	.	.	none	.	RBM27	119	.	NM_018989	exon9	c.T1428C	p.P476P	CAGCCCTACCCCT	.	PASS	Atlas-SNP
NAP1L3	4675	hgsc.bcm.edu	37	X	92928071	92928071	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	40.0	10.0	33.0	0.0	0.25	0	.	.	none	.	NAP1L3	81	.	NM_004538	exon1	c.A233C	p.K78T	ACCCTCTTCTTTC	.	PASS	Atlas-SNP
SEC14L3	266629	hgsc.bcm.edu	37	22	30867895	30867895	+	Silent	SNP	G	G	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	44.0	12.0	43.0	0.0	0.272727	0	.	.	none	.	SEC14L3	46	.	NM_174975	exon1	c.C51G	p.A17A	CACCTTGGCCAGG	.	PASS	Atlas-SNP
SMC1B	27127	hgsc.bcm.edu	37	22	45802439	45802439	+	Silent	SNP	T	T	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	70.0	28.0	66.0	0.0	0.4	0	.	.	none	.	SMC1B	215	.	NM_148674	exon4	c.A517C	p.R173R	ACTTTCTTTTCTT	.	PASS	Atlas-SNP
TMTC4	84899	hgsc.bcm.edu	37	13	101287335	101287335	+	Silent	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	216.0	12.0	160.0	0.0	0.0555556	0	.	.	none	.	TMTC4	103	.	NM_032813	exon11	c.G1317T	p.G439G	ACAGTACCCAACG	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141294279	141294279	+	Splice_Site	SNP	C	C	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	94.0	27.0	84.0	0.0	0.287234	0	.	.	none	.	LRP1B	1315	.	NM_018557	exon47	c.7514-1G>T	.	TTTTAGCTGCAAG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179600638	179600638	+	Silent	SNP	G	G	A	rs184307461	bycluster;by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	205.0	43.0	155.0	0.0	0.209756	0	G|1.000;A|0.000	0.000	strong	TTN_ENST00000356127,NS,carcinoma,-2,2	TTN	18412	2	NM_001267550	exon50	c.C14535T	p.D4845D	TTCTGCGTCGGAA	.	PASS	Atlas-SNP
ADAM29	11086	hgsc.bcm.edu	37	4	175899130	175899130	+	Silent	SNP	G	G	A	rs376108430		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	75.0	9.0	63.0	2.0	0.12	0.031746	.	.	weak	ADAM29,NS,carcinoma,0,1	ADAM29	262	1	NM_001130703	exon4	c.G2454A	p.T818T	TGTGACGCCCTCC	.	scavenged	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128750536	128750536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	88.0	31.0	75.0	0.0	0.352273	0	.	.	none	.	MYC	168	.	NM_002467	exon2	c.A73G	p.R25G	ACCAACAGGAACT	.	PASS	Atlas-SNP
GRM4	2914	hgsc.bcm.edu	37	6	34004150	34004150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	79.0	15.0	87.0	0.0	0.189873	0	.	.	none	.	GRM4	317	.	NM_000841	exon9	c.C1737G	p.I579M	AAGCTTGATGATG	.	PASS	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	37	12	20787945	20787945	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	111.0	7.0	95.0	0.0	0.0630631	0	.	.	none	.	PDE3A	184	.	NM_000921	exon8	c.A1956T	p.K652N	GAGGAAAGCATCG	.	PASS	Atlas-SNP
PTPRO	5800	hgsc.bcm.edu	37	12	15637161	15637161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	145.0	6.0	114.0	0.0	0.0413793	0	.	.	none	.	PTPRO	148	.	NM_002848	exon2	c.G329A	p.R110K	CATCCAGATCAAT	.	PASS	Atlas-SNP
SPAG5	10615	hgsc.bcm.edu	37	17	26919654	26919654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	134.0	48.0	126.0	0.0	0.358209	0	.	.	none	.	SPAG5	92	.	NM_006461	exon3	c.A608G	p.E203G	GACTCCTCTAAGA	.	PASS	Atlas-SNP
IKBKB	3551	hgsc.bcm.edu	37	8	42166458	42166458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	91.0	36.0	104.0	0.0	0.395604	0	.	.	none	.	IKBKB	88	.	NM_001556	exon8	c.G607A	p.V203I	GTGACCGTCGACT	.	PASS	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128750613	128750613	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	88.0	29.0	75.0	0.0	0.329545	0	.	.	none	MYC_ENST00000377970,NS,lymphoid_neoplasm,0,4	MYC	168	4	NM_002467	exon2	c.G150A	p.Q50Q	GCAGCAGCAGCAG	.	PASS	Atlas-SNP
HAVCR1	26762	hgsc.bcm.edu	37	5	156479571	156479571	+	Missense_Mutation	SNP	C	C	T	rs183130208	bycluster	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	437.0	23.0	342.0	0.0	0.0526316	0	.	.	weak	.	HAVCR1	84	.	NM_001099414	exon4	c.G474A	p.M158I	AGTCGTCATTGGA	.	PASS	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950717	79950717	+	Silent	SNP	C	C	T	rs201906899	by1000genomes	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	12.0	3.0	7.0	0.0	0.25	0	C|0.979;T|0.021	0.021	strong	MSH3_ENST00000265081,NS,carcinoma,+2,1	MSH3	129	1	NM_002439	exon1	c.C171T	p.A57A	AGCGGCCGCAGCG	.	scavenged	Atlas-SNP
SYDE1	85360	hgsc.bcm.edu	37	19	15224520	15224520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	34.0	8.0	80.0	0.0	0.235294	0	.	.	none	.	SYDE1	44	.	NM_033025	exon8	c.G1954A	p.A652T	CGCTACGCCGGCG	.	PASS	Atlas-SNP
TATDN2	9797	hgsc.bcm.edu	37	3	10318158	10318158	+	Silent	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	52.0	4.0	58.0	0.0	0.0769231	0	.	.	none	.	TATDN2	59	.	NM_014760	exon5	c.C1947T	p.D649D	CCCTGACTACAAG	.	PASS	Atlas-SNP
ZNF33A	7581	hgsc.bcm.edu	37	10	38343345	38343345	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	122.0	24.0	116.0	0.0	0.196721	0	.	.	none	.	ZNF33A	103	.	NM_006954	exon5	c.A293C	p.N98T	AAGAAAACCAATC	.	PASS	Atlas-SNP
ARRDC4	91947	hgsc.bcm.edu	37	15	98512603	98512603	+	Silent	SNP	C	C	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	95.0	36.0	75.0	0.0	0.378947	0	.	.	none	.	ARRDC4	30	.	NM_183376	exon5	c.C876G	p.S292S	CTATTCCTTAGCT	.	PASS	Atlas-SNP
BIVM-ERCC5	0	hgsc.bcm.edu	37	13	103504506	103504506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	180.0	47.0	113.0	0.0	0.261111	0	.	.	none	.	.	.	.	NM_001204425	exon10	c.C1489G	p.R497G	GGAGTCCGGGATC	.	PASS	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139626110	139626110	+	Silent	SNP	C	C	T	rs139816222		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	142.0	35.0	126.0	0.0	0.246479	0	C|1.000;T|0.000	0.000	weak	COL22A1,rectum,carcinoma,-1,1	COL22A1	390	1	NM_152888	exon56	c.G3978A	p.P1326P	ACTCACCGGTGGG	.	PASS	Atlas-SNP
NUP153	9972	hgsc.bcm.edu	37	6	17706506	17706506	+	Splice_Site	SNP	A	A	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	37.0	11.0	72.0	0.0	0.297297	0	.	.	none	.	NUP153	116	.	NM_005124	exon2	c.111+2T>A	.	TCCCATACCTGAT	.	PASS	Atlas-SNP
SLC29A3	55315	hgsc.bcm.edu	37	10	73111474	73111474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	91.0	4.0	108.0	0.0	0.043956	0	.	.	none	.	SLC29A3	51	.	NM_018344	exon4	c.C539T	p.T180I	CCTCCACTGTCTT	.	PASS	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128750559	128750559	+	Missense_Mutation	SNP	C	C	G	rs146504683	byfrequency;alternate_allele	TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	94.0	31.0	82.0	0.0	0.329787	0	C|0.999;T|0.001	.	alt	.	MYC	168	.	NM_002467	exon2	c.C96G	p.D32E	CTACGACTCGGTG	.	PASS	Atlas-SNP
DDX3X	1654	hgsc.bcm.edu	37	X	41204802	41204802	+	Splice_Site	SNP	G	G	T	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	129.0	68.0	80.0	0.0	0.527132	0	.	.	none	.	DDX3X	138	.	NM_001193417	exon11	c.1267+1G>T	.	CAACAGGTAACAT	.	PASS	Atlas-SNP
ABCA8	10351	hgsc.bcm.edu	37	17	66918384	66918384	+	Silent	SNP	T	T	C	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	60.0	20.0	64.0	0.0	0.333333	0	.	.	none	.	ABCA8	213	.	NM_007168	exon11	c.A1500G	p.K500K	TTTACCTTTCAAG	.	PASS	Atlas-SNP
FKBP9	11328	hgsc.bcm.edu	37	7	33014897	33014897	+	Silent	SNP	G	G	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	135.0	43.0	138.0	1.0	0.318519	0.00724638	.	.	none	FKBP9,brain,glioma,+1,9	FKBP9	335	9	NM_007270	exon3	c.G471A	p.P157P	GCCCCCGAGTTGC	.	scavenged	Atlas-SNP
TACC1	6867	hgsc.bcm.edu	37	8	38677553	38677553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	22.0	7.0	16.0	0.0	0.318182	0	.	.	none	.	TACC1	98	.	NM_006283	exon3	c.A791G	p.Y264C	CATCCTATCACTT	.	PASS	Atlas-SNP
C1orf27	54953	hgsc.bcm.edu	37	1	186357578	186357578	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-8046-01A-11D-2210-10	TCGA-FF-8046-10A-01D-2210-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa847c3d-d3a7-46aa-a81b-db5099a458fb	35736b32-0a2a-45c0-aef9-5e7f3d2733aa	120.0	38.0	115.0	0.0	0.316667	0	.	.	none	C1orf27_ENST00000287859,NS,carcinoma,-1,2	C1orf27	41	2	NM_001164245	exon5	c.T335A	p.M112K	AGCTAATGTTTGC	.	PASS	Atlas-SNP