Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TTotCov TVarCov NTotCov NVarCov TVarRat NVarRat dbSNP_AF dbSNP_PopFreq dbSNP_Strength COSMIC_Codon COSMIC_Gene COSMIC_Gene_Freq COSMIC_Site_Freq Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target Confidence Algorithm MTSS1 9788 hgsc.bcm.edu 37 8 125565316 125565318 + In_Frame_Del DEL CTC CTC - novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 220.0 43.0 204.0 0.0 0.195 . . . none . MTSS1 79 . NM_014751 exon14 c.2184_2186del p.728_729del . . PASS Pindel,Atlas-Indel TOX 9760 hgsc.bcm.edu 37 8 59750643 59750643 + Frame_Shift_Del DEL T T - novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 83.0 19.0 112.0 0.0 0.229 . . . none . TOX 83 . NM_014729 exon5 c.922delC p.Q308fs . . PASS Pindel,Atlas-Indel MAML3 55534 hgsc.bcm.edu 37 4 140811112 140811123 + In_Frame_Del DEL TGCTGCTGCTGT TGCTGCTGCTGT - rs66794549 alternate_allele TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 TGCTGCTGCTGT TGCTGCTGCTGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 120.0 23.0 92.0 0.0 0.191667 0 . . alt . MAML3 192 . NM_018717 exon2 c.1468_1479del p.490_493del . . PASS Atlas-Indel CSNK2A1 1457 hgsc.bcm.edu 37 20 470463 470463 + Frame_Shift_Del DEL C C - novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 91.0 18.0 79.0 0.0 0.198 . . . none . CSNK2A1 36 . NM_001895 exon9 c.685delA p.K229fs . . PASS Pindel,Atlas-Indel CYP3A43 64816 hgsc.bcm.edu 37 7 99453289 99453290 + Frame_Shift_Ins INS - - A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 128.0 31.0 89.0 0.0 0.242188 0 . . none CYP3A43,NS,carcinoma,0,1 CYP3A43 52 1 NM_022820 exon8 c.746_747insA p.L249fs . . PASS Atlas-Indel TNFAIP3 7128 hgsc.bcm.edu 37 6 138200459 138200460 + Frame_Shift_Del DEL TG TG - novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 91.0 17.0 63.0 0.0 0.186813 0 . . none . TNFAIP3 340 . NM_001270508 exon7 c.1876_1877del p.626_626del . . PASS Atlas-Indel NHLRC2 374354 hgsc.bcm.edu 37 10 115636657 115636657 + Silent SNP A A C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 75.0 13.0 82.0 0.0 0.173333 0 . . none . NHLRC2 56 . NM_198514 exon3 c.A709C p.R237R ACTGATAGATTGG . PASS Atlas-SNP NUDT8 254552 hgsc.bcm.edu 37 11 67395800 67395800 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 49.0 12.0 30.0 0.0 0.244898 0 . . none . NUDT8 12 . NM_181843 exon3 c.G399A p.S133S CTCCTCCGAGTTG . PASS Atlas-SNP MUC6 4588 hgsc.bcm.edu 37 11 1017576 1017576 + Missense_Mutation SNP G G T rs372353242 alternate_allele TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 566.0 48.0 501.0 0.0 0.0848057 0 . . alt MUC6_ENST00000421673,NS,carcinoma,+1,2 MUC6 408 2 NM_005961 exon31 c.C5225A p.T1742K TTGGCCGTGCTAA . PASS Atlas-SNP CDH26 60437 hgsc.bcm.edu 37 20 58569512 58569512 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 50.0 10.0 44.0 0.0 0.2 0 . . none CDH26_ENST00000244047,caecum,carcinoma,-1,2 CDH26 229 2 NM_177980 exon11 c.C1634T p.A545V GAAATGCGGAGGA . PASS Atlas-SNP TBX5 6910 hgsc.bcm.edu 37 12 114836488 114836488 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 118.0 51.0 86.0 0.0 0.432203 0 . . none . TBX5 188 . NM_000192 exon5 c.C400T p.R134C ACAGGCGGCCAGG . PASS Atlas-SNP C1orf65 164127 hgsc.bcm.edu 37 1 223567173 223567173 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 30.0 6.0 29.0 0.0 0.2 0 . . none . C1orf65 71 . NM_152610 exon1 c.C356T p.P119L CCCGCCCGGCTTG . PASS Atlas-SNP MSANTD3 91283 hgsc.bcm.edu 37 9 103204249 103204249 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 69.0 18.0 58.0 0.0 0.26087 0 . . none . MSANTD3 10 . NM_001198805 exon2 c.C29T p.A10V AGCCTGCCAAATA . PASS Atlas-SNP NEGR1 257194 hgsc.bcm.edu 37 1 72400774 72400774 + Missense_Mutation SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 167.0 33.0 134.0 0.0 0.197605 0 . . none . NEGR1 60 . NM_173808 exon2 c.C397A p.L133I CAGTTAGATGCAC . PASS Atlas-SNP ISLR 3671 hgsc.bcm.edu 37 15 74468257 74468257 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 53.0 11.0 45.0 0.0 0.207547 0 . . none . ISLR 49 . NM_201526 exon2 c.A1058G p.D353G GTGAGGACACACT . PASS Atlas-SNP DUOX1 53905 hgsc.bcm.edu 37 15 45427482 45427482 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 77.0 16.0 59.0 0.0 0.207792 0 . . none . DUOX1 125 . NM_017434 exon6 c.G488A p.R163Q ATCCCCGGGACCC . PASS Atlas-SNP USP9X 8239 hgsc.bcm.edu 37 X 41056722 41056722 + Missense_Mutation SNP T T A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 157.0 71.0 155.0 0.0 0.452229 0 . . none . USP9X 385 . NM_001039591 exon29 c.T4339A p.F1447I AAAAAATTTCATA . PASS Atlas-SNP CCDC102A 92922 hgsc.bcm.edu 37 16 57562804 57562804 + Missense_Mutation SNP G G A rs12935069 bycluster;byhapmap;by1000genomes TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 6.0 6.0 0.0 0.0 1 . G|0.001;A|0.999 0.999 strong . CCDC102A 22 . NM_033212 exon2 c.C286T p.R96W ACCACCGGCGCAT . PASS Atlas-SNP ANGPTL7 10218 hgsc.bcm.edu 37 1 11253778 11253778 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 55.0 7.0 44.0 0.0 0.127273 0 . . none . ANGPTL7 23 . NM_021146 exon3 c.G619A p.E207K GGGAACGAACACA . PASS Atlas-SNP OR5L1 219437 hgsc.bcm.edu 37 11 55579421 55579421 + Missense_Mutation SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 404.0 57.0 407.0 0.0 0.141089 0 . . none . OR5L1 145 . NM_001004738 exon1 c.T479C p.L160S TTCATTTGTGCTT . PASS Atlas-SNP SLC45A2 51151 hgsc.bcm.edu 37 5 33964023 33964023 + Missense_Mutation SNP A A C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 125.0 23.0 105.0 0.0 0.184 0 . . none . SLC45A2 100 . NM_016180 exon3 c.T661G p.F221V CAGAGAAGAAGAA . PASS Atlas-SNP TTC13 79573 hgsc.bcm.edu 37 1 231093993 231093993 + Missense_Mutation SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 168.0 27.0 167.0 0.0 0.160714 0 . . none . TTC13 74 . NM_001122835 exon3 c.A419G p.N140S CTGTCATTATCAG . PASS Atlas-SNP U2AF1 7307 hgsc.bcm.edu 37 21 44513242 44513242 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 62.0 8.0 61.0 0.0 0.129032 0 . . none U2AF1_ENST00000380276,NS,neuroblastoma,-1,4 U2AF1 322 4 NM_001025203 exon8 c.G693A p.S231S ATCTCTCGACCGC . PASS Atlas-SNP BTG1 694 hgsc.bcm.edu 37 12 92537899 92537899 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 146.0 18.0 92.0 0.0 0.123288 0 . . none . BTG1 30 . NM_001731 exon2 c.C473T p.T158M GGGCTCGTTCTGC . PASS Atlas-SNP RGL3 57139 hgsc.bcm.edu 37 19 11508197 11508197 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 71.0 25.0 51.0 0.0 0.352113 0 . . none RGL3_ENST00000380456,NS,carcinoma,0,2 RGL3 100 2 NM_001161616 exon17 c.C1841T p.A614V TGCTGCGCCGGGA . PASS Atlas-SNP UBN1 29855 hgsc.bcm.edu 37 16 4910954 4910954 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 100.0 53.0 67.0 0.0 0.53 0 . . none . UBN1 88 . NM_001079514 exon7 c.A961G p.S321G CTGCTCAGTGAGT . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138332 37138332 + Missense_Mutation SNP C C G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 52.0 19.0 49.0 0.0 0.365385 0 . . none . PIM1 71 . NM_001243186 exon1 c.C254G p.A85G CCTGCGCCGACAT . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23235998 23235998 + Missense_Mutation SNP G G A rs201857114 bycluster TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 74.0 20.0 66.0 0.0 0.27027 0 . . weak . IGLL5 26 . NM_001178126 exon2 c.G325A p.G109S GTCCTAGGTAAGT . PASS Atlas-SNP TSC22D1 8848 hgsc.bcm.edu 37 13 45009000 45009000 + Missense_Mutation SNP A A C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 187.0 57.0 202.0 0.0 0.304813 0 . . none . TSC22D1 88 . NM_183422 exon3 c.T2984G p.L995W TACATCAAATGGC . PASS Atlas-SNP RBM38 55544 hgsc.bcm.edu 37 20 55967801 55967801 + Missense_Mutation SNP A A C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 125.0 35.0 138.0 0.0 0.28 0 . . none . RBM38 19 . NM_183425 exon2 c.A329C p.Y110S TGGCATATCTGGG . PASS Atlas-SNP WAS 7454 hgsc.bcm.edu 37 X 48547156 48547156 + Silent SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 184.0 95.0 149.0 0.0 0.516304 0 . . none . WAS 51 . NM_000377 exon10 c.T1039C p.L347L GTACCTTTGGGGA . PASS Atlas-SNP CASR 846 hgsc.bcm.edu 37 3 122003487 122003487 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 61.0 13.0 65.0 0.0 0.213115 0 . . none CASR,colon,carcinoma,0,1 CASR 190 1 NM_001178065 exon7 c.C2716T p.R906C GTCTCCCGCAAGC . PASS Atlas-SNP ABL1 25 hgsc.bcm.edu 37 9 133729485 133729485 + Silent SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 116.0 21.0 90.0 0.0 0.181034 0 . . none . ABL1 1632 . NM_007313 exon2 c.G171A p.E57E CTTTGAGCCTCAG . PASS Atlas-SNP MESDC2 23184 hgsc.bcm.edu 37 15 81271769 81271769 + Missense_Mutation SNP A A C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 50.0 17.0 62.0 0.0 0.34 0 . . none . MESDC2 23 . NM_015154 exon3 c.T496G p.Y166D AGGCGTAGCTCCC . PASS Atlas-SNP RASSF10 644943 hgsc.bcm.edu 37 11 13031220 13031220 + Nonsense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 66.0 17.0 80.0 0.0 0.257576 0 . . none . . . . NM_001080521 exon1 c.C97T p.R33X GTTGTGCGAGTGC . PASS Atlas-SNP C20orf118 140711 hgsc.bcm.edu 37 20 35517718 35517718 + Missense_Mutation SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 119.0 5.0 74.0 0.0 0.0420168 0 . . none C20orf118,NS,carcinoma,-2,1 C20orf118 21 1 NM_080628 exon6 c.T577C p.F193L CCGACCTTCAACA . PASS Atlas-SNP ARHGAP21 57584 hgsc.bcm.edu 37 10 24910129 24910129 + Missense_Mutation SNP G G C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 357.0 87.0 304.0 0.0 0.243697 0 . . none ARHGAP21,NS,carcinoma,+1,1 ARHGAP21 185 1 NM_020824 exon9 c.C695G p.T232S GTACTGGTTTGCT . PASS Atlas-SNP ITPR1 3708 hgsc.bcm.edu 37 3 4722294 4722294 + Nonsense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 103.0 26.0 101.0 1.0 0.252427 0.00990099 . . none ITPR1,rectum,carcinoma,0,1 ITPR1 659 1 NM_001099952 exon25 c.C2998T p.R1000X TTTAAGCGAGAGT . scavenged Atlas-SNP CCDC171 203238 hgsc.bcm.edu 37 9 15745534 15745534 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 101.0 20.0 93.0 0.0 0.19802 0 . . none . . . . NM_173550 exon18 c.G2576A p.R859H AGTTGCGTTGTTT . PASS Atlas-SNP UGT2B17 7367 hgsc.bcm.edu 37 4 69433904 69433904 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 366.0 88.0 306.0 0.0 0.240437 0 . . none . UGT2B17 34 . NM_001077 exon1 c.G299A p.S100N GAAATACTATATG . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230310 23230310 + Missense_Mutation SNP T T A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 107.0 20.0 140.0 0.0 0.186916 0 . . none . IGLL5 26 . NM_001178126 exon1 c.T77A p.L26Q GGCCCCTGCTGCT . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138420 37138420 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 66.0 26.0 66.0 0.0 0.393939 0 . . none . PIM1 71 . NM_001243186 exon1 c.C342T p.T114T CGCCACCAAGCTG . PASS Atlas-SNP DENND3 22898 hgsc.bcm.edu 37 8 142178188 142178188 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 163.0 12.0 146.0 0.0 0.0736196 0 . . none . DENND3 127 . NM_014957 exon13 c.C1599T p.Y533Y GGCATACCATGCC . PASS Atlas-SNP OR5M10 390167 hgsc.bcm.edu 37 11 56345100 56345100 + Missense_Mutation SNP G G A rs182443406 bycluster;by1000genomes;alternate_allele TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 193.0 54.0 221.0 0.0 0.279793 0 G|0.999;T|0.001 . alt . OR5M10 56 . NM_001004741 exon1 c.C98T p.A33V TAGATCGCCAGGA . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230348 23230348 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 113.0 19.0 135.0 0.0 0.168142 0 . . none . IGLL5 26 . NM_001178126 exon1 c.C115T p.L39L GGCCTGCTGCGCC . PASS Atlas-SNP ARL13B 200894 hgsc.bcm.edu 37 3 93768309 93768309 + Missense_Mutation SNP C C G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 416.0 92.0 420.0 0.0 0.221154 0 . . none . ARL13B 52 . NM_182896 exon8 c.C1084G p.L362V GAACCACTTAATA . PASS Atlas-SNP RPL13 6137 hgsc.bcm.edu 37 16 89629371 89629371 + Missense_Mutation SNP G G A rs139252401 TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 148.0 46.0 100.0 0.0 0.310811 0 G|1.000;A|0.000 0.000 weak . RPL13 11 . NM_000977 exon6 c.G557A p.R186H TGGCCCGTGCCAA . PASS Atlas-SNP MYD88 4615 hgsc.bcm.edu 37 3 38182337 38182337 + Nonsense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 96.0 45.0 120.0 0.0 0.46875 0 . . none . MYD88 900 . NM_001172569 exon3 c.C592T p.Q198X TCTCTCCAGGTAA . PASS Atlas-SNP GRID2 2895 hgsc.bcm.edu 37 4 94376873 94376873 + Missense_Mutation SNP T T G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 184.0 47.0 178.0 0.0 0.255435 0 . . none . GRID2 233 . NM_001510 exon11 c.T1606G p.F536V GTGGACTTTACGA . PASS Atlas-SNP GRHPR 9380 hgsc.bcm.edu 37 9 37424900 37424900 + Missense_Mutation SNP G G C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 41.0 18.0 58.0 0.0 0.439024 0 . . none . GRHPR 35 . NM_012203 exon2 c.G142C p.G48R GAGCGAGGTGTGG . PASS Atlas-SNP CDC42BPG 55561 hgsc.bcm.edu 37 11 64591992 64591992 + Missense_Mutation SNP G G A rs138706676 TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 137.0 29.0 134.0 0.0 0.211679 0 G|1.000;A|0.000 0.000 weak . CDC42BPG 101 . NM_017525 exon37 c.C4609T p.R1537W GGGGCCGTTCTGA . PASS Atlas-SNP GGA2 23062 hgsc.bcm.edu 37 16 23521643 23521643 + Silent SNP G G C rs1071685 bycluster;byfrequency;by1000genomes TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 13.0 7.0 5.0 0.0 0.538462 0 G|0.291;C|0.709 0.709 strong . GGA2 49 . NM_015044 exon1 c.C90G p.L30L CTCACTGAGCCAC . PASS Atlas-SNP ETAA1 54465 hgsc.bcm.edu 37 2 67630426 67630426 + Silent SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 160.0 34.0 171.0 0.0 0.2125 0 . . none . ETAA1 88 . NM_019002 exon5 c.G612A p.E204E GGAAGAGCTAGAT . PASS Atlas-SNP DUOX2 50506 hgsc.bcm.edu 37 15 45404810 45404810 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 82.0 16.0 90.0 0.0 0.195122 0 . . none . DUOX2 137 . NM_014080 exon4 c.G267A p.T89T GCCCCGCGTGGCT . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230394 23230394 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 92.0 13.0 126.0 0.0 0.141304 0 . . none . IGLL5 26 . NM_001178126 exon1 c.C161T p.A54V CTGGAGCCTCAGT . PASS Atlas-SNP OR8B2 26595 hgsc.bcm.edu 37 11 124252524 124252524 + Missense_Mutation SNP C C A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 357.0 69.0 383.0 0.0 0.193277 0 . . none . OR8B2 42 . NM_001005468 exon1 c.G716T p.S239I CAAGTACTGAAGG . PASS Atlas-SNP C3orf35 339883 hgsc.bcm.edu 37 3 37458937 37458937 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 145.0 29.0 161.0 0.0 0.2 0 . . none C3orf35,NS,carcinoma,+2,1 C3orf35 21 1 NM_178342 exon5 c.C180T p.G60G GCAGGGCAGTGCT . PASS Atlas-SNP CXCR4 7852 hgsc.bcm.edu 37 2 136873448 136873448 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 126.0 39.0 99.0 0.0 0.309524 0 . . none . CXCR4 51 . NM_001008540 exon1 c.G62A p.G21D CCTGAGCCCATTT . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230440 23230440 + Splice_Site SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 61.0 14.0 94.0 0.0 0.229508 0 . . none . IGLL5 26 . NM_001256296 exon1 c.100+1G>A . GGGCAGGTAAGGG . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138946 37138946 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 58.0 18.0 59.0 0.0 0.310345 0 . . none . PIM1 71 . NM_001243186 exon4 c.G559A p.V187M AAGAAGGTGAGCT . PASS Atlas-SNP ISCU 23479 hgsc.bcm.edu 37 12 108956417 108956417 + Missense_Mutation SNP T T G rs67681514 alternate_allele TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 8.0 8.0 0.0 0.0 1 . GG|0.500;TT|0.500 . alt . ISCU 19 . NM_213595 exon1 c.T19G p.F7V GGGGCTTTCCGTC . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230386 23230386 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 95.0 14.0 132.0 0.0 0.147368 0 . . none . IGLL5 26 . NM_001256296 exon1 c.C47T p.T16I CCCAGACCCTGGA . PASS Atlas-SNP HHIP 64399 hgsc.bcm.edu 37 4 145658962 145658962 + Silent SNP G G A rs35379077 bycluster;byfrequency TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 134.0 35.0 132.0 0.0 0.261194 0 G|1.000;A|0.000 0.000 strong . HHIP 100 . NM_022475 exon13 c.G1956A p.P652P TAGACCGAACAAG . PASS Atlas-SNP CACNA1E 777 hgsc.bcm.edu 37 1 181689418 181689418 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 262.0 38.0 293.0 0.0 0.145038 0 . . none . CACNA1E 778 . NM_001205293 exon14 c.C1828T p.L610F TTCCTCCTCTTCC . PASS Atlas-SNP ADCK1 57143 hgsc.bcm.edu 37 14 78392248 78392248 + Nonsense_Mutation SNP C C T rs142956948 bycluster;by1000genomes TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 92.0 17.0 84.0 1.0 0.184783 0.0119048 C|0.999;T|0.001 0.001 strong ADCK1,colon,carcinoma,0,1 ADCK1 81 1 NM_020421 exon9 c.C1150T p.R384X ACGGCGCGATCGT . scavenged Atlas-SNP DLC1 10395 hgsc.bcm.edu 37 8 12957770 12957770 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 103.0 21.0 83.0 0.0 0.203883 0 . . none . DLC1 411 . NM_182643 exon9 c.G2076A p.L692L GATGATCAACCCC . PASS Atlas-SNP TRIM4 89122 hgsc.bcm.edu 37 7 99507230 99507230 + Missense_Mutation SNP C C T rs188783002 bycluster;by1000genomes;alternate_allele TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 141.0 25.0 125.0 0.0 0.177305 0 C|1.000;A|0.000 . alt . TRIM4 33 . NM_033017 exon3 c.G525A p.M175I TAAATGCATGACT . PASS Atlas-SNP PAN2 9924 hgsc.bcm.edu 37 12 56712936 56712936 + Silent SNP G G C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 131.0 30.0 97.0 0.0 0.229008 0 . . none . PAN2 107 . NM_001127460 exon24 c.C3312G p.V1104V CAGGTAGACAGTG . PASS Atlas-SNP RBFOX1 54715 hgsc.bcm.edu 37 16 7759118 7759118 + Missense_Mutation SNP C C T rs372365163 TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 193.0 96.0 155.0 0.0 0.497409 0 . . weak RBFOX1_ENST00000550418,NS,carcinoma,0,3 RBFOX1 341 3 NM_145893 exon13 c.C1172T p.T391M CACCTACGGCGTT . PASS Atlas-SNP CSNK2A3 283106 hgsc.bcm.edu 37 11 11373697 11373697 + Missense_Mutation SNP A A C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 74.0 19.0 69.0 0.0 0.256757 0 . . none . . . . NM_001256686 exon1 c.T970G p.F324V TGTAGAAATAGGG . PASS Atlas-SNP BCL11A 53335 hgsc.bcm.edu 37 2 60689133 60689133 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 54.0 18.0 56.0 0.0 0.333333 0 . . none BCL11A_ENST00000356842,caecum,carcinoma,0,5 BCL11A 298 5 NM_018014 exon4 c.C914T p.P305L GCCATTGGATTCA . PASS Atlas-SNP UPK3B 80761 hgsc.bcm.edu 37 7 76143285 76143285 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 112.0 30.0 85.0 0.0 0.267857 0 . . none . UPK3B 15 . NM_182684 exon5 c.A563G p.D188G CCATCGACACCTG . PASS Atlas-SNP POM121L12 285877 hgsc.bcm.edu 37 7 53104001 53104001 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 51.0 15.0 54.0 0.0 0.294118 0 . . none POM121L12,NS,carcinoma,-2,1 POM121L12 146 1 NM_182595 exon1 c.C637T p.R213W CAGCCCCGGCCCT . PASS Atlas-SNP AHCYL1 10768 hgsc.bcm.edu 37 1 110561015 110561015 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 139.0 32.0 129.0 0.0 0.230216 0 . . none . AHCYL1 49 . NM_006621 exon12 c.C1144T p.R382W GTGACACGGGAGC . PASS Atlas-SNP PLK2 10769 hgsc.bcm.edu 37 5 57755718 57755718 + Silent SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 151.0 29.0 106.0 0.0 0.192053 0 . . none . PLK2 71 . NM_006622 exon1 c.C69T p.G23G ACCCTTGCCCAGC . PASS Atlas-SNP ITGAV 3685 hgsc.bcm.edu 37 2 187521026 187521026 + Silent SNP A A C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 192.0 36.0 143.0 0.0 0.1875 0 . . none ITGAV,rectum,carcinoma,+2,1 ITGAV 124 1 NM_002210 exon17 c.A1617C p.R539R AATTCGACGAGCA . PASS Atlas-SNP CNTRL 11064 hgsc.bcm.edu 37 9 123922502 123922502 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 385.0 89.0 297.0 0.0 0.231169 0 . . none . CNTRL 161 . NM_007018 exon30 c.A5011G p.T1671A CAACTTACACTTA . PASS Atlas-SNP ISCU 23479 hgsc.bcm.edu 37 12 108956418 108956418 + Missense_Mutation SNP T T G rs10778648 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 8.0 8.0 0.0 0.0 1 . T|0.126;G|0.874 0.874 strong . ISCU 19 . NM_213595 exon1 c.T20G p.F7C GGGCTTTCCGTCT . PASS Atlas-SNP UCKL1 54963 hgsc.bcm.edu 37 20 62576008 62576008 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 132.0 38.0 121.0 0.0 0.287879 0 . . none . UCKL1 28 . NM_017859 exon6 c.G734A p.R245H CGGCCGCGCTCAC . PASS Atlas-SNP DNAH5 1767 hgsc.bcm.edu 37 5 13845064 13845064 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 82.0 28.0 78.0 1.0 0.341463 0.0128205 . . none DNAH5,scalp,malignant_melanoma,-1,1 DNAH5 868 1 NM_001369 exon32 c.T5153C p.F1718S ACGAAGAAAAACC . scavenged Atlas-SNP TTYH2 94015 hgsc.bcm.edu 37 17 72233625 72233625 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 45.0 25.0 37.0 0.0 0.555556 0 . . none . TTYH2 63 . NM_032646 exon4 c.G607A p.D203N CTATCCGACCAGA . PASS Atlas-SNP OC90 729330 hgsc.bcm.edu 37 8 133045291 133045291 + Missense_Mutation SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 64.0 9.0 80.0 0.0 0.140625 0 . . none OC90_ENST00000262283,NS,carcinoma,-1,2 OC90 163 2 NM_001080399 exon11 c.A854G p.E285G CCTTTTTCAGTGG . PASS Atlas-SNP MERTK 10461 hgsc.bcm.edu 37 2 112779062 112779062 + Silent SNP C C T rs149178674 TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 88.0 20.0 72.0 0.0 0.227273 0 C|1.000;T|0.000 0.000 weak MERTK,colon,carcinoma,0,1 MERTK 112 1 NM_006343 exon17 c.C2253T p.G751G CAGTGGCGATTAT . PASS Atlas-SNP IRF2BPL 64207 hgsc.bcm.edu 37 14 77493791 77493791 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 46.0 10.0 37.0 0.0 0.217391 0 . . none . IRF2BPL 40 . NM_024496 exon1 c.G345A p.Q115Q CTGCTGCTGTTGC . PASS Atlas-SNP SULT1C2 6819 hgsc.bcm.edu 37 2 108917339 108917339 + Missense_Mutation SNP C C G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 113.0 34.0 108.0 0.0 0.300885 0 . . none . SULT1C2 82 . NM_001056 exon4 c.C323G p.T108S TAAAGACTCACCT . PASS Atlas-SNP UBR4 23352 hgsc.bcm.edu 37 1 19494536 19494536 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 70.0 18.0 79.0 0.0 0.257143 0 . . none . UBR4 415 . NM_020765 exon28 c.C3884T p.T1295I TCTCCAGTCAACC . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37139191 37139191 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 90.0 28.0 101.0 0.0 0.311111 0 . . none . PIM1 71 . NM_001243186 exon4 c.C804T p.L268L CGACCTCAATCGC . PASS Atlas-SNP TADA2B 93624 hgsc.bcm.edu 37 4 7056150 7056150 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 81.0 22.0 101.0 0.0 0.271605 0 . . none TADA2B,rectum,carcinoma,-1,1 TADA2B 29 1 NM_152293 exon2 c.G632A p.R211Q ACGTGCGGAAGCT . PASS Atlas-SNP NAV3 89795 hgsc.bcm.edu 37 12 78571048 78571048 + Missense_Mutation SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 171.0 68.0 136.0 0.0 0.397661 0 . . none . NAV3 506 . NM_014903 exon27 c.G5252T p.G1751V ATGCTGGTGACTG . PASS Atlas-SNP MPEG1 219972 hgsc.bcm.edu 37 11 58978306 58978306 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 208.0 57.0 158.0 0.0 0.274038 0 . . none MPEG1,NS,carcinoma,-1,1 MPEG1 72 1 NM_001039396 exon1 c.G2033A p.G678D CGGGTGCCGTAGA . PASS Atlas-SNP SORL1 6653 hgsc.bcm.edu 37 11 121323082 121323082 + Missense_Mutation SNP C C A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 55.0 12.0 53.0 0.0 0.218182 0 . . none . SORL1 218 . NM_003105 exon1 c.C42A p.F14L CCCGTTCCTATTC . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23235999 23235999 + Splice_Site SNP G G C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 75.0 21.0 64.0 0.0 0.28 0 . . none . IGLL5 26 . NM_001178126 exon2 c.325+1G>C . TCCTAGGTAAGTG . PASS Atlas-SNP OSBPL10 114884 hgsc.bcm.edu 37 3 32022601 32022601 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 114.0 32.0 86.0 0.0 0.280702 0 . . none . OSBPL10 160 . NM_017784 exon1 c.C71T p.A24V GAGGTAGCACGGC . PASS Atlas-SNP GRM2 2912 hgsc.bcm.edu 37 3 51749480 51749480 + Missense_Mutation SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 75.0 18.0 57.0 0.0 0.24 0 . . none GRM2,caecum,carcinoma,-1,1 GRM2 91 1 NM_000839 exon4 c.G1691T p.G564V GCTGGGGCGATGC . PASS Atlas-SNP CD79B 974 hgsc.bcm.edu 37 17 62006799 62006799 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 77.0 36.0 67.0 1.0 0.467532 0.0149254 . . none CD79B,NS,lymphoid_neoplasm,0,13 CD79B 38 13 NM_001039933 exon5 c.T589C p.Y197H CCTCGTAGGTGTG . scavenged Atlas-SNP HECTD1 25831 hgsc.bcm.edu 37 14 31626395 31626395 + Silent SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 320.0 79.0 194.0 0.0 0.246875 0 . . none . HECTD1 159 . NM_015382 exon11 c.C1737A p.I579I TGCAGTGATTTCC . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138625 37138625 + Nonsense_Mutation SNP C C G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 82.0 42.0 85.0 0.0 0.512195 0 . . none PIM1,NS,carcinoma,+2,2 PIM1 71 2 NM_001243186 exon2 c.C432G p.Y144X GGTCTACTCAGGC . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138901 37138901 + Missense_Mutation SNP C C A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 52.0 28.0 46.0 0.0 0.538462 0 . . none . PIM1 71 . NM_001243186 exon4 c.C514A p.P172T CTGCAGCCTAATG . PASS Atlas-SNP MYH8 4626 hgsc.bcm.edu 37 17 10304053 10304053 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 106.0 14.0 74.0 0.0 0.132075 0 . . none . MYH8 346 . NM_002472 exon27 c.C3389T p.A1130V CGGGACGCCCTCT . PASS Atlas-SNP FAF1 11124 hgsc.bcm.edu 37 1 51121170 51121170 + Missense_Mutation SNP T T A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 83.0 20.0 90.0 0.0 0.240964 0 . . none . FAF1 64 . NM_007051 exon8 c.A688T p.I230F CGGGGATACTTGT . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138380 37138380 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 65.0 8.0 60.0 0.0 0.123077 0 . . none PIM1,NS,lymphoid_neoplasm,0,1 PIM1 71 1 NM_001243186 exon1 c.C302T p.A101V CGCTTGCCCACCT . scavenged Atlas-SNP CHRM3 1131 hgsc.bcm.edu 37 1 240072488 240072488 + Silent SNP C C A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 120.0 29.0 106.0 0.0 0.241667 0 . . none . CHRM3 118 . NM_000740 exon5 c.C1737A p.V579V GTCGGTCATTTTT . PASS Atlas-SNP KLHL18 23276 hgsc.bcm.edu 37 3 47385186 47385186 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 57.0 12.0 55.0 0.0 0.210526 0 . . none . KLHL18 46 . NM_025010 exon10 c.G1480A p.A494T AGCATTGCCGAGA . PASS Atlas-SNP GPR149 344758 hgsc.bcm.edu 37 3 154139229 154139229 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 134.0 26.0 133.0 0.0 0.19403 0 . . none . GPR149 134 . NM_001038705 exon3 c.G1222A p.G408R AAATCCCATAACT . PASS Atlas-SNP ATRNL1 26033 hgsc.bcm.edu 37 10 116931103 116931103 + Silent SNP A A T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 202.0 20.0 171.0 0.0 0.0990099 0 . . none . ATRNL1 219 . NM_001276282 exon8 c.A1401T p.L467L TTCTCTAATAAAA . PASS Atlas-SNP LIMCH1 22998 hgsc.bcm.edu 37 4 41648713 41648713 + Missense_Mutation SNP C C T rs143733086 bycluster;by1000genomes TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 150.0 8.0 174.0 0.0 0.0533333 0 C|1.000;T|0.000 0.000 strong LIMCH1_ENST00000503057,NS,carcinoma,0,1 LIMCH1 233 1 NM_014988 exon12 c.C1468T p.R490W TACCTGCGGCAAC . PASS Atlas-SNP OR5D16 390144 hgsc.bcm.edu 37 11 55606497 55606497 + Missense_Mutation SNP A A T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 317.0 70.0 306.0 2.0 0.22082 0.00653595 . . none OR5D16,NS,carcinoma,+2,1 OR5D16 94 1 NM_001005496 exon1 c.A270T p.E90D TGTAGAAGATAGA . scavenged Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37140867 37140867 + Missense_Mutation SNP A A T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 155.0 80.0 172.0 0.0 0.516129 0 . . none PIM1,trunk,malignant_melanoma,-2,1 PIM1 71 1 NM_001243186 exon5 c.A976T p.M326L TATGATATGGTGT . PASS Atlas-SNP CDH7 1005 hgsc.bcm.edu 37 18 63529970 63529970 + Missense_Mutation SNP C C A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 167.0 30.0 114.0 0.0 0.179641 0 . . none . CDH7 362 . NM_004361 exon11 c.C1681A p.P561T TATCTGCCAATTT . PASS Atlas-SNP EIF2B3 8891 hgsc.bcm.edu 37 1 45341357 45341357 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 125.0 7.0 92.0 0.0 0.056 0 . . none . EIF2B3 43 . NM_020365 exon9 c.T986C p.L329S GACAGCAATTTGG . PASS Atlas-SNP IRF4 3662 hgsc.bcm.edu 37 6 393318 393318 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 101.0 20.0 68.0 0.0 0.19802 0 . . none . IRF4 65 . NM_001195286 exon2 c.C166T p.H56Y TGGAAGCACGCGG . PASS Atlas-SNP HKR1 284459 hgsc.bcm.edu 37 19 37853921 37853921 + Silent SNP A A T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 53.0 16.0 43.0 0.0 0.301887 0 . . none . HKR1 74 . NM_181786 exon6 c.A1224T p.S408S ACATTCAGGAGAG . PASS Atlas-SNP AMOTL2 51421 hgsc.bcm.edu 37 3 134089710 134089710 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 69.0 14.0 51.0 0.0 0.202899 0 . . none . AMOTL2 52 . NM_016201 exon2 c.G566A p.R189H TGGTTGCGGGCCA . PASS Atlas-SNP DOCK5 80005 hgsc.bcm.edu 37 8 25181469 25181469 + Splice_Site SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 79.0 14.0 94.0 0.0 0.177215 0 . . none . DOCK5 167 . NM_024940 exon17 c.1719+2T>C . ATAAGGTGGTGCT . PASS Atlas-SNP HEPH 9843 hgsc.bcm.edu 37 X 65480101 65480101 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 56.0 30.0 36.0 0.0 0.535714 0 . . none . HEPH 224 . NM_138737 exon19 c.A3358G p.T1120A TCTCGAACAGGTA . PASS Atlas-SNP NAA11 84779 hgsc.bcm.edu 37 4 80246356 80246356 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 171.0 38.0 196.0 0.0 0.222222 0 . . none . NAA11 43 . NM_032693 exon1 c.G676A p.D226N TGGAATCCGAGCT . PASS Atlas-SNP NOX4 50507 hgsc.bcm.edu 37 11 89177362 89177362 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 104.0 28.0 103.0 0.0 0.269231 0 . . none NOX4,NS,carcinoma,+1,1 NOX4 101 1 NM_001143836 exon5 c.T388C p.F130L CTGAGAAGTTGAG . PASS Atlas-SNP EPHA3 2042 hgsc.bcm.edu 37 3 89499497 89499497 + Missense_Mutation SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 120.0 32.0 103.0 0.0 0.266667 0 . . none EPHA3,NS,carcinoma,0,1 EPHA3 501 1 NM_005233 exon15 c.G2667T p.K889N CCTGAAGATCATC . PASS Atlas-SNP PCSK2 5126 hgsc.bcm.edu 37 20 17240884 17240884 + Splice_Site SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 50.0 10.0 43.0 0.0 0.2 0 . . none . PCSK2 112 . NM_001201528 exon3 c.121-1G>T . TCCACAGCTTCCC . PASS Atlas-SNP SCN7A 6332 hgsc.bcm.edu 37 2 167313511 167313511 + Missense_Mutation SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 187.0 44.0 147.0 0.0 0.235294 0 . . none SCN7A_ENST00000409855,NS,lymphoid_neoplasm,0,2 SCN7A 410 2 NM_002976 exon10 c.A1159G p.S387G ACAAACTTGCCAT . PASS Atlas-SNP DTX1 1840 hgsc.bcm.edu 37 12 113496132 113496132 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 89.0 10.0 71.0 0.0 0.11236 0 . . none . DTX1 83 . NM_004416 exon1 c.C135T p.C45C CGTGTGCCACCAC . PASS Atlas-SNP OSBPL10 114884 hgsc.bcm.edu 37 3 32022625 32022625 + Missense_Mutation SNP C C G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 148.0 33.0 113.0 0.0 0.222973 0 . . none . OSBPL10 160 . NM_017784 exon1 c.G47C p.S16T CTGCTGCTGTTGC . PASS Atlas-SNP HRNR 388697 hgsc.bcm.edu 37 1 152187485 152187485 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 272.0 16.0 261.0 0.0 0.0588235 0 . . none HRNR,trunk,malignant_melanoma,-1,1 HRNR 403 1 NM_001009931 exon3 c.G6620A p.R2207H GAAGAACGACCTG . scavenged Atlas-SNP CCDC166 100130274 hgsc.bcm.edu 37 8 144790043 144790043 + Silent SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 46.0 17.0 24.0 0.0 0.369565 0 . . none . CCDC166 1 . NM_001162914 exon1 c.C237T p.Y79Y GCTCACGTAGCTG . PASS Atlas-SNP RAB3D 9545 hgsc.bcm.edu 37 19 11446354 11446354 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 71.0 15.0 47.0 0.0 0.211268 0 . . none RAB3D,NS,carcinoma,+1,1 RAB3D 24 1 NM_004283 exon3 c.G334A p.A112T GCACAGCGGCAAA . PASS Atlas-SNP RHOBTB1 9886 hgsc.bcm.edu 37 10 62631996 62631996 + Missense_Mutation SNP T T G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 104.0 24.0 116.0 0.0 0.230769 0 . . none . RHOBTB1 61 . NM_014836 exon10 c.A1868C p.N623T TTGTAGTTGGTGC . PASS Atlas-SNP C1QBP 708 hgsc.bcm.edu 37 17 5336352 5336352 + Missense_Mutation SNP A A C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 93.0 24.0 68.0 0.0 0.258065 0 . . none . C1QBP 12 . NM_001212 exon6 c.T832G p.F278V TGACAAAACTCTT . PASS Atlas-SNP BTG1 694 hgsc.bcm.edu 37 12 92537992 92537992 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 158.0 33.0 93.0 0.0 0.208861 0 . . none . BTG1 30 . NM_001731 exon2 c.C380T p.A127V GGTGAGGCTTCAT . PASS Atlas-SNP CACNA1F 778 hgsc.bcm.edu 37 X 49083586 49083586 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 45.0 18.0 41.0 0.0 0.4 0 . . none . CACNA1F 218 . NM_001256789 exon9 c.G1122A p.E374E GGAGAACTCCCTG . PASS Atlas-SNP BEND5 79656 hgsc.bcm.edu 37 1 49208438 49208438 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 98.0 7.0 97.0 0.0 0.0714286 0 . . none . BEND5 93 . NM_024603 exon4 c.G751A p.A251T CAATGGCGGGACC . PASS Atlas-SNP GIN1 54826 hgsc.bcm.edu 37 5 102442522 102442522 + Silent SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 492.0 31.0 430.0 0.0 0.0630081 0 . . none . GIN1 53 . NM_017676 exon3 c.C231T p.C77C TTCATGGCATTCT . PASS Atlas-SNP SLC7A2 6542 hgsc.bcm.edu 37 8 17406346 17406346 + Missense_Mutation SNP G G C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 211.0 49.0 165.0 0.0 0.232227 0 . . none . SLC7A2 157 . NM_001164771 exon4 c.G812C p.S271T CAGCAAGTGCCAG . PASS Atlas-SNP ATG4C 84938 hgsc.bcm.edu 37 1 63282305 63282305 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 142.0 33.0 126.0 0.0 0.232394 0 . . none ATG4C_ENST00000317868,NS,carcinoma,-1,4 ATG4C 96 4 NM_178221 exon4 c.G220A p.G74R ATTGCAGGAAATG . PASS Atlas-SNP SLC28A3 64078 hgsc.bcm.edu 37 9 86917281 86917281 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 37.0 10.0 46.0 0.0 0.27027 0 . . none . SLC28A3 72 . NM_001199633 exon5 c.G358A p.A120T CACAGGCCGAAAT . PASS Atlas-SNP C15orf43 145645 hgsc.bcm.edu 37 15 45270701 45270701 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 498.0 109.0 397.0 0.0 0.218875 0 . . none . C15orf43 19 . NM_152448 exon7 c.G538A p.D180N TCAATTGATGCCA . PASS Atlas-SNP HIST1H4K 8362 hgsc.bcm.edu 37 6 27799065 27799065 + Missense_Mutation SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 341.0 128.0 353.0 1.0 0.375367 0.00283286 . . none . HIST1H4K 15 . NM_003541 exon1 c.A241G p.T81A TGACCGTCTTGCG . PASS Atlas-SNP HIST2H2AC 8338 hgsc.bcm.edu 37 1 149858804 149858804 + Missense_Mutation SNP C C G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 272.0 68.0 219.0 0.0 0.25 0 . . none HIST2H2AC,NS,carcinoma,-2,3 HIST2H2AC 75 3 NM_003517 exon1 c.C280G p.L94V GAGGAACTGAACA . PASS Atlas-SNP ZNF721 170960 hgsc.bcm.edu 37 4 435533 435533 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 135.0 38.0 111.0 0.0 0.281481 0 . . none . ZNF721 205 . NM_133474 exon3 c.T2723C p.I908T GCATAAAGATTTG . PASS Atlas-SNP CCND2 894 hgsc.bcm.edu 37 12 4383227 4383227 + Silent SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 83.0 21.0 68.0 0.0 0.253012 0 . . none . CCND2 50 . NM_001759 exon1 c.G21A p.E7E CCACGAGGTGGAC . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138355 37138355 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 64.0 19.0 65.0 0.0 0.296875 0 . . none PIM1,NS,lymphoid_neoplasm,0,3 PIM1 71 3 NM_001243186 exon1 c.C277T p.L93F GGGATGCTCTTGT . PASS Atlas-SNP HIPK3 10114 hgsc.bcm.edu 37 11 33374879 33374879 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 261.0 54.0 242.0 0.0 0.206897 0 . . none . HIPK3 92 . NM_005734 exon17 c.C3413T p.A1138V TGTTAGCCTCTCC . PASS Atlas-SNP SLC9B2 133308 hgsc.bcm.edu 37 4 103966055 103966055 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 383.0 76.0 358.0 0.0 0.198433 0 . . none NHEDC2,colon,carcinoma,+1,2 . . 2 NM_178833 exon8 c.C988T p.R330C GGTCACGGCTTGG . PASS Atlas-SNP MCHR1 2847 hgsc.bcm.edu 37 22 41076964 41076964 + Missense_Mutation SNP C C T rs200627010 TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 82.0 21.0 77.0 1.0 0.256098 0.012987 . . weak MCHR1,NS,carcinoma,0,1 MCHR1 45 1 NM_005297 exon2 c.C301T p.R101C CCTCCTCGCACGG . scavenged Atlas-SNP KLF4 9314 hgsc.bcm.edu 37 9 110250112 110250112 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 39.0 12.0 63.0 0.0 0.307692 0 . . none . KLF4 106 . NM_004235 exon3 c.C563T p.A188V ATGTCCGCCAGGT . PASS Atlas-SNP PPYR1 5540 hgsc.bcm.edu 37 10 47086871 47086871 + Missense_Mutation SNP T T G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 228.0 32.0 219.0 1.0 0.140351 0.00456621 . . none PPYR1,NS,carcinoma,-2,1 PPYR1 54 1 NM_005972 exon3 c.T88G p.F30V TACAACTTCTCTG . scavenged Atlas-SNP MAGEB6 158809 hgsc.bcm.edu 37 X 26212458 26212458 + Missense_Mutation SNP A A T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 65.0 30.0 73.0 0.0 0.461538 0 . . none . MAGEB6 91 . NM_173523 exon2 c.A495T p.K165N CTCAAAATATGAT . PASS Atlas-SNP ZNF208 7757 hgsc.bcm.edu 37 19 22157027 22157027 + Missense_Mutation SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 97.0 5.0 58.0 0.0 0.0515464 0 . . none . ZNF208 817 . NM_007153 exon4 c.C809A p.A270E AGGATTGCAGATT . PASS Atlas-SNP ZNF141 7700 hgsc.bcm.edu 37 4 367062 367062 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 118.0 24.0 104.0 0.0 0.20339 0 . . none . ZNF141 48 . NM_003441 exon4 c.G836A p.G279E ATGCTGGAGAGAA . PASS Atlas-SNP AIDA 64853 hgsc.bcm.edu 37 1 222885628 222885628 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 175.0 35.0 168.0 0.0 0.2 0 . . none . AIDA 23 . NM_022831 exon1 c.G32A p.R11H CCCCAGCGCTGCA . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230419 23230419 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 81.0 24.0 111.0 0.0 0.296296 0 . . none . IGLL5 26 . NM_001256296 exon1 c.C80T p.A27V ATCCAGCCTGCGG . PASS Atlas-SNP ACTG1 71 hgsc.bcm.edu 37 17 79478964 79478964 + Missense_Mutation SNP G G C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 154.0 7.0 131.0 0.0 0.0454545 0 . . none . ACTG1 55 . NM_001614 exon3 c.C328G p.L110V GGTTCAGGGGGGC . PASS Atlas-SNP DSG3 1830 hgsc.bcm.edu 37 18 29052745 29052745 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 186.0 40.0 156.0 0.0 0.215054 0 . . none . DSG3 172 . NM_001944 exon14 c.A2095G p.S699G ATGGAAAGTTCTG . PASS Atlas-SNP MAST1 22983 hgsc.bcm.edu 37 19 12980018 12980018 + Missense_Mutation SNP A A T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 117.0 30.0 120.0 0.0 0.25641 0 . . none . MAST1 214 . NM_014975 exon22 c.A2912T p.Q971L CCATCCAGCGCTC . PASS Atlas-SNP ZBED1 9189 hgsc.bcm.edu 37 X 2408513 2408513 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 299.0 29.0 291.0 0.0 0.09699 0 . . none . ZBED1 64 . NM_001171135 exon2 c.C248T p.T83M TGCTCCGTGTTGC . PASS Atlas-SNP PARK2 5071 hgsc.bcm.edu 37 6 162206824 162206824 + Missense_Mutation SNP C C G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 96.0 15.0 75.0 0.0 0.15625 0 . . none . PARK2 96 . NM_004562 exon7 c.G851C p.G284A GAGTAGCCAAGTT . PASS Atlas-SNP FOXC1 2296 hgsc.bcm.edu 37 6 1610903 1610903 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 47.0 13.0 61.0 0.0 0.276596 0 . . none . FOXC1 19 . NM_001453 exon1 c.G223A p.D75N CCCAAGGACATGG . PASS Atlas-SNP LPPR5 0 hgsc.bcm.edu 37 1 99470000 99470000 + Silent SNP G G A rs148163708 alternate_allele TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 66.0 17.0 67.0 0.0 0.257576 0 G|1.000;T|0.000 . alt . . . . NM_001037317 exon1 c.C228T p.P76P GAGCACGGGGACC . PASS Atlas-SNP DGAT2L6 347516 hgsc.bcm.edu 37 X 69424319 69424319 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 79.0 32.0 100.0 0.0 0.405063 0 . . none . DGAT2L6 40 . NM_198512 exon6 c.G812A p.R271H TCACTCGCGGATC . PASS Atlas-SNP UAP1L1 91373 hgsc.bcm.edu 37 9 139973009 139973009 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 78.0 16.0 82.0 0.0 0.205128 0 . . none . UAP1L1 46 . NM_207309 exon3 c.C550T p.H184Y AGGGAGCACAACT . PASS Atlas-SNP HAS1 3036 hgsc.bcm.edu 37 19 52222861 52222861 + Silent SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 70.0 27.0 53.0 0.0 0.385714 0 . . none . HAS1 61 . NM_001523 exon2 c.C300T p.T100T GGAGATGGTCAGC . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230436 23230436 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 66.0 7.0 97.0 0.0 0.106061 0 . . none . IGLL5 26 . NM_001178126 exon1 c.G203A p.G68D TGTGGGGCAGGTA . PASS Atlas-SNP MAPKAPK2 9261 hgsc.bcm.edu 37 1 206858801 206858801 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 78.0 18.0 50.0 0.0 0.230769 0 . . none . MAPKAPK2 45 . NM_004759 exon1 c.G227A p.G76D TCAACGGCAAAGT . PASS Atlas-SNP C2orf81 388963 hgsc.bcm.edu 37 2 74642291 74642291 + Missense_Mutation SNP A A G rs116859876 bycluster;byfrequency;by1000genomes TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 92.0 13.0 74.0 0.0 0.141304 0 A|0.959;G|0.041 0.041 strong . C2orf81 23 . NM_001145054 exon4 c.T932C p.V311A CCGCCCACAGAGG . PASS Atlas-SNP SRRM2 23524 hgsc.bcm.edu 37 16 2816224 2816224 + Missense_Mutation SNP C C T rs151100831 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 73.0 42.0 39.0 0.0 0.575342 0 C|0.999;A|0.001 . alt SRRM2,colon,carcinoma,0,1 SRRM2 263 1 NM_016333 exon11 c.C5695T p.R1899W CGGAGACGGTCAA . PASS Atlas-SNP BTG2 7832 hgsc.bcm.edu 37 1 203274878 203274878 + Splice_Site SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 79.0 14.0 51.0 0.0 0.177215 0 . . none . BTG2 16 . NM_006763 exon1 c.142+2T>C . CACAGGTGAGCGC . PASS Atlas-SNP OR5L1 219437 hgsc.bcm.edu 37 11 55579424 55579424 + Missense_Mutation SNP G G C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 403.0 61.0 413.0 0.0 0.151365 0 . . none . OR5L1 145 . NM_001004738 exon1 c.G482C p.C161S ATTTGTGCTTAGC . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37139038 37139038 + Silent SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 87.0 12.0 100.0 0.0 0.137931 0 . . none . PIM1 71 . NM_001243186 exon4 c.G651T p.V217V GCCGGTGCAAGAT . PASS Atlas-SNP SLA 6503 hgsc.bcm.edu 37 8 134057342 134057342 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 86.0 27.0 112.0 0.0 0.313953 0 . . none . SLA 63 . NM_006748 exon5 c.T491C p.V164A TGTCTCACCGACA . PASS Atlas-SNP DLC1 10395 hgsc.bcm.edu 37 8 13356598 13356598 + Missense_Mutation SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 188.0 34.0 162.0 0.0 0.180851 0 . . none DLC1_ENST00000511869,colon,carcinoma,+1,3 DLC1 411 3 NM_182643 exon2 c.A983G p.Q328R GGTTCCTGGGTGG . PASS Atlas-SNP SLC8A1 6546 hgsc.bcm.edu 37 2 40655834 40655834 + Silent SNP T T C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 152.0 37.0 168.0 0.0 0.243421 0 . . none . SLC8A1 221 . NM_001252624 exon1 c.A1587G p.V529V AATAGTTACAGTG . PASS Atlas-SNP NDST1 3340 hgsc.bcm.edu 37 5 149901306 149901306 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 31.0 9.0 33.0 0.0 0.290323 0 . . none . NDST1 79 . NM_001543 exon2 c.G490A p.V164M TACGGCGTGGGCA . PASS Atlas-SNP HIST1H1C 3006 hgsc.bcm.edu 37 6 26056463 26056463 + Missense_Mutation SNP G G A rs79562358 bycluster;by1000genomes TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 182.0 72.0 171.0 0.0 0.395604 0 G|0.999;A|0.001 0.001 strong . HIST1H1C 80 . NM_005319 exon1 c.C194T p.A65V GCCAACGCTTTTT . PASS Atlas-SNP RHBDF2 79651 hgsc.bcm.edu 37 17 74471179 74471179 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 69.0 8.0 61.0 0.0 0.115942 0 . . none RHBDF2,colon,carcinoma,0,1 RHBDF2 57 1 NM_024599 exon10 c.C1247T p.T416M AGCAGCGTGATGA . PASS Atlas-SNP ZFHX4 79776 hgsc.bcm.edu 37 8 77765620 77765620 + Missense_Mutation SNP A A G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 69.0 12.0 50.0 0.0 0.173913 0 . . none . ZFHX4 878 . NM_024721 exon10 c.A6463G p.S2155G TCTCCAAGTGAAG . PASS Atlas-SNP ERG 2078 hgsc.bcm.edu 37 21 39775625 39775625 + Missense_Mutation SNP G G A rs140222241 TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 97.0 27.0 76.0 0.0 0.278351 0 G|1.000;A|0.000 0.000 weak . ERG 78 . NM_001243432 exon6 c.C416T p.T139M CATAGCGTAGGAT . PASS Atlas-SNP PLEKHM2 23207 hgsc.bcm.edu 37 1 16054583 16054583 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 164.0 32.0 134.0 0.0 0.195122 0 . . none . PLEKHM2 94 . NM_015164 exon10 c.C1770T p.N590N AGACAACAATCAC . PASS Atlas-SNP PLXNA1 5361 hgsc.bcm.edu 37 3 126747903 126747903 + Silent SNP C C T rs369457038 bycluster TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 46.0 15.0 59.0 0.0 0.326087 0 . . weak PLXNA1,NS,carcinoma,0,1 PLXNA1 185 1 NM_032242 exon25 c.C4737T p.N1579N TGACAACGATTGG . PASS Atlas-SNP MLL2 8085 hgsc.bcm.edu 37 12 49435941 49435941 + Nonsense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 69.0 16.0 65.0 0.0 0.231884 0 . . none MLL2_ENST00000301067,bladder,carcinoma,0,2 MLL2 1173 2 NM_003482 exon28 c.C6040T p.Q2014X ACAGCTGGCCCAA . PASS Atlas-SNP ZNF705G 100131980 hgsc.bcm.edu 37 8 7215921 7215921 + Missense_Mutation SNP T T A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 95.0 26.0 94.0 0.0 0.273684 0 . . none . ZNF705G 24 . NM_001164457 exon5 c.A480T p.E160D ATGTGGTTCAGTG . PASS Atlas-SNP BTG2 7832 hgsc.bcm.edu 37 1 203276287 203276287 + Silent SNP C C G novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 66.0 14.0 58.0 0.0 0.212121 0 . . none BTG2,NS,carcinoma,+2,1 BTG2 16 1 NM_006763 exon2 c.C198G p.R66R CTACCGCTGCATT . PASS Atlas-SNP EIF2B3 8891 hgsc.bcm.edu 37 1 45341356 45341356 + Missense_Mutation SNP C C A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 125.0 8.0 95.0 0.0 0.064 0 . . none . EIF2B3 43 . NM_020365 exon9 c.G987T p.L329F AGACAGCAATTTG . PASS Atlas-SNP MPEG1 219972 hgsc.bcm.edu 37 11 58979064 58979064 + Silent SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 73.0 16.0 65.0 0.0 0.219178 0 . . none . MPEG1 72 . NM_001039396 exon1 c.C1275T p.I425I CTCGTGGATCTGG . PASS Atlas-SNP NRF1 4899 hgsc.bcm.edu 37 7 129330335 129330335 + Silent SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 102.0 28.0 79.0 0.0 0.27451 0 . . none . NRF1 40 . NM_005011 exon5 c.G555T p.L185L AGAACTGCCGCCT . PASS Atlas-SNP INPP4B 8821 hgsc.bcm.edu 37 4 143044563 143044563 + Silent SNP A A C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 96.0 25.0 76.0 0.0 0.260417 0 . . none . INPP4B 132 . NM_003866 exon21 c.T1899G p.A633A CAATCCAGCAAGC . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230439 23230439 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 64.0 15.0 94.0 0.0 0.234375 0 . . none . IGLL5 26 . NM_001178126 exon1 c.G206A p.R69K GGGGCAGGTAAGG . PASS Atlas-SNP ARC 23237 hgsc.bcm.edu 37 8 143695199 143695199 + Missense_Mutation SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 27.0 6.0 31.0 0.0 0.222222 0 . . none . ARC 34 . NM_015193 exon1 c.G434A p.R145H GTGTGGCGGGCTG . PASS Atlas-SNP BTG2 7832 hgsc.bcm.edu 37 1 203274867 203274867 + Missense_Mutation SNP G G C novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 86.0 15.0 56.0 0.0 0.174419 0 . . none BTG2,lymph_node,lymphoid_neoplasm,-1,2 BTG2 16 2 NM_006763 exon1 c.G133C p.A45P CAGGAGGCACTCA . PASS Atlas-SNP OR10Q1 219960 hgsc.bcm.edu 37 11 57995634 57995634 + Silent SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 70.0 12.0 62.0 0.0 0.171429 0 . . none . OR10Q1 79 . NM_001004471 exon1 c.C714A p.G238G GCGGCGGCCCTCG . PASS Atlas-SNP MYOM2 9172 hgsc.bcm.edu 37 8 2057240 2057240 + Missense_Mutation SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 190.0 38.0 171.0 0.0 0.2 0 . . none MYOM2,NS,carcinoma,0,1 MYOM2 251 1 NM_003970 exon25 c.G3098T p.R1033L GGGTTCGCTTCTG . PASS Atlas-SNP KRTAP1-4 728255 hgsc.bcm.edu 37 17 39186028 39186028 + Silent SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 144.0 40.0 145.0 0.0 0.277778 0 . . none . KRTAP1-4 4 . NM_001257305 exon1 c.C303A p.S101S ACAGTAGGACGGG . PASS Atlas-SNP CYTB 0 hgsc.bcm.edu 37 MT 15884 15884 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 20.0 10.0 32.0 0.0 0.5 0 . . none . . . . ENST00000361789 exon1 c.G1138A p.A380T AAATGGGCCTGTC . PASS Atlas-SNP RBMXL3 139804 hgsc.bcm.edu 37 X 114426552 114426552 + Missense_Mutation SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 37.0 16.0 30.0 0.0 0.432432 0 . . none . RBMXL3 83 . NM_001145346 exon1 c.G2548A p.D850N AGTTACGACCGGA . PASS Atlas-SNP SRRM1 10250 hgsc.bcm.edu 37 1 24996752 24996752 + Silent SNP A A T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 202.0 57.0 222.0 0.0 0.282178 0 . . none . SRRM1 81 . NM_005839 exon15 c.A2346T p.P782P GTCACCAGCTGTA . PASS Atlas-SNP SV2B 9899 hgsc.bcm.edu 37 15 91835705 91835705 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 218.0 53.0 211.0 0.0 0.243119 0 . . none . SV2B 98 . NM_014848 exon14 c.C1975T p.L659L ATCCTTCTGGCTG . PASS Atlas-SNP GPD2 2820 hgsc.bcm.edu 37 2 157407178 157407178 + Silent SNP G G T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 119.0 25.0 104.0 0.0 0.210084 0 . . none . GPD2 59 . NM_001083112 exon8 c.G891T p.V297V CTCTGTGCGCAAA . PASS Atlas-SNP FAM83G 644815 hgsc.bcm.edu 37 17 18907061 18907061 + Silent SNP G G A novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 76.0 17.0 66.0 0.0 0.223684 0 . . none . FAM83G 51 . NM_001039999 exon2 c.C294T p.G98G TTCCTCGCCGTCG . PASS Atlas-SNP MAST4 375449 hgsc.bcm.edu 37 5 66462402 66462402 + Silent SNP C C T novel TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 136.0 36.0 99.0 0.0 0.264706 0 . . none . MAST4 218 . NM_001164664 exon29 c.C7395T p.F2465F CAGCTTCCCTGAA . PASS Atlas-SNP GRHPR 9380 hgsc.bcm.edu 37 9 37424860 37424860 + Missense_Mutation SNP G G T rs180177304 alternate_allele TCGA-FF-A7CR-01A-11D-A382-10 TCGA-FF-A7CR-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq f8b1d5ee-a86d-4505-96f8-3e8b0c050946 2bbed379-b7b8-4107-afe0-bfd42b041bb3 46.0 18.0 55.0 0.0 0.391304 0 . . alt . GRHPR 35 . NM_012203 exon2 c.G102T p.W34C GCAGTGGGACTCG . PASS Atlas-SNP