Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TTotCov TVarCov NTotCov NVarCov TVarRat NVarRat dbSNP_AF dbSNP_PopFreq dbSNP_Strength COSMIC_Codon COSMIC_Gene COSMIC_Gene_Freq COSMIC_Site_Freq Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target Confidence Algorithm TNFAIP3 7128 hgsc.bcm.edu 37 6 138192658 138192659 + Frame_Shift_Ins INS - - GG novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 18.0 10.0 46.0 0.0 0.556 . . . none . TNFAIP3 340 . NM_001270507 exon2 c.294_295insGG p.N98fs . . PASS Pindel,Atlas-Indel KRT2 3849 hgsc.bcm.edu 37 12 53045603 53045604 + In_Frame_Ins INS - - AAGCCGCTGCCACCTCCA novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 60.0 21.0 61.0 0.0 0.35 0 . . none . KRT2 94 . NM_000423 exon1 c.324_325insTGGAGGTGGCAGCGGCTT p.F108delinsFGGGSGF . . PASS Atlas-Indel NOTCH2 4853 hgsc.bcm.edu 37 1 120529632 120529635 + Frame_Shift_Del DEL ACAA ACAA - novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 ACAA ACAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 77.0 25.0 69.0 0.0 0.325 . . . none . NOTCH2 348 . NM_024408 exon5 c.823_826del p.275_276del . . PASS Pindel,Atlas-Indel SLC6A14 11254 hgsc.bcm.edu 37 X 115584299 115584299 + Frame_Shift_Del DEL C C - novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 113.0 64.0 162.0 0.0 0.566 . . . none . SLC6A14 56 . NM_007231 exon9 c.1276delG p.A426fs . . PASS Pindel,Atlas-Indel NCAPD2 9918 hgsc.bcm.edu 37 12 6635472 6635473 + Frame_Shift_Ins INS - - C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 73.0 23.0 55.0 0.0 0.315 . . . none . NCAPD2 99 . NM_014865 exon20 c.2501_2502insC p.H834fs . . PASS Pindel,Atlas-Indel VEZF1 7716 hgsc.bcm.edu 37 17 56058015 56058016 + Frame_Shift_Ins INS - - T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 200.0 37.0 277.0 0.0 0.185 0 . . none . VEZF1 50 . NM_007146 exon4 c.925_926insA p.G309fs . . PASS Atlas-Indel GPR26 2849 hgsc.bcm.edu 37 10 125426000 125426002 + In_Frame_Del DEL TGC TGC - novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 TGC TGC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 70.0 24.0 81.0 0.0 0.343 . . . none . GPR26 47 . NM_153442 exon1 c.76_78del p.26_26del . . PASS Pindel,Atlas-Indel HIST1H3B 8358 hgsc.bcm.edu 37 6 26031883 26031883 + Frame_Shift_Del DEL C C - novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 95.0 35.0 85.0 0.0 0.368 . . . none HIST1H3B,NS,lymphoid_neoplasm,-1,3 HIST1H3B 59 3 NM_003537 exon1 c.407delC p.A136fs . . PASS Pindel,Atlas-Indel TUBA3D 113457 hgsc.bcm.edu 37 2 132238015 132238015 + Missense_Mutation SNP T T A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 140.0 62.0 133.0 0.0 0.442857 0 . . none . TUBA3D 60 . NM_080386 exon4 c.T749A p.V250E TGAATGTGGACTT . PASS Atlas-SNP CCDC180 0 hgsc.bcm.edu 37 9 100071801 100071801 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 71.0 35.0 76.0 0.0 0.492958 0 . . none . . . . NM_020893 exon3 c.G307A p.E103K ACTCCTGAAGGGG . PASS Atlas-SNP KRT19 3880 hgsc.bcm.edu 37 17 39681516 39681516 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 54.0 34.0 75.0 0.0 0.62963 0 . . none . KRT19 41 . NM_002276 exon2 c.G430A p.A144T TGGTGGCACCAAG . PASS Atlas-SNP CDH22 64405 hgsc.bcm.edu 37 20 44845551 44845551 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 28.0 12.0 33.0 0.0 0.428571 0 . . none . CDH22 112 . NM_021248 exon5 c.C752T p.A251V TGACCCGCCATGT . PASS Atlas-SNP SLC6A14 11254 hgsc.bcm.edu 37 X 115584183 115584183 + Silent SNP T T A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 111.0 91.0 157.0 1.0 0.81982 0.00636943 . . none . SLC6A14 56 . NM_007231 exon9 c.T1161A p.G387G CGTAGGTTTTGAT . PASS Atlas-SNP SMAD7 4092 hgsc.bcm.edu 37 18 46448230 46448230 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 46.0 21.0 42.0 0.0 0.456522 0 . . none . SMAD7 22 . NM_005904 exon4 c.G793A p.A265T AGTATGCCACCAC . PASS Atlas-SNP ZNF454 285676 hgsc.bcm.edu 37 5 178391738 178391738 + Missense_Mutation SNP G G T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 160.0 151.0 173.0 0.0 0.94375 0 . . none . ZNF454 99 . NM_001178089 exon5 c.G333T p.K111N AATAAAGGAAAGA . PASS Atlas-SNP SUPT5H 6829 hgsc.bcm.edu 37 19 39950582 39950582 + Silent SNP C C A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 33.0 17.0 52.0 0.0 0.515152 0 . . none . SUPT5H 119 . NM_003169 exon9 c.C606A p.A202A CATTGCCTACCAG . PASS Atlas-SNP KRI1 65095 hgsc.bcm.edu 37 19 10671051 10671051 + Missense_Mutation SNP T T C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 24.0 6.0 32.0 0.0 0.25 0 . . none . KRI1 65 . NM_023008 exon9 c.A755G p.N252S CGTTTGTTGAGGA . PASS Atlas-SNP COL4A1 1282 hgsc.bcm.edu 37 13 110831690 110831690 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 72.0 68.0 78.0 0.0 0.944444 0 . . none . COL4A1 372 . NM_001845 exon30 c.G2272A p.G758R TGCTCCCCTTCTC . PASS Atlas-SNP TYRO3 7301 hgsc.bcm.edu 37 15 41859646 41859646 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 70.0 34.0 65.0 0.0 0.485714 0 . . none . TYRO3 169 . NM_006293 exon7 c.C872T p.A291V TGCCTGCCACCAA . PASS Atlas-SNP GHSR 2693 hgsc.bcm.edu 37 3 172163205 172163205 + Nonsense_Mutation SNP G G A rs148371213 bycluster TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 84.0 41.0 85.0 0.0 0.488095 0 G|1.000;A|0.000 0.000 weak . GHSR 104 . NM_198407 exon2 c.C847T p.R283X AATATCGCCCTAC . PASS Atlas-SNP PXDN 7837 hgsc.bcm.edu 37 2 1680761 1680761 + Silent SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 160.0 71.0 176.0 0.0 0.44375 0 . . none . PXDN 255 . NM_012293 exon8 c.C786T p.T262T GTACACGGTGTTC . PASS Atlas-SNP CARD11 84433 hgsc.bcm.edu 37 7 2987283 2987283 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 227.0 54.0 200.0 1.0 0.237885 0.005 . . none CARD11,colon,carcinoma,+1,2 CARD11 339 2 NM_032415 exon3 c.G146A p.C49Y ACCTTACACTGAC . scavenged Atlas-SNP NRD1 4898 hgsc.bcm.edu 37 1 52306079 52306079 + Missense_Mutation SNP T T A rs62648104 bycluster TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 414.0 40.0 346.0 0.0 0.0966184 0 T|0.024;A|0.976 0.976 weak . NRD1 89 . NM_001101662 exon2 c.A449T p.E150V TCTTCCTCCACCT . PASS Atlas-SNP SSTR1 6751 hgsc.bcm.edu 37 14 38679760 38679760 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 42.0 13.0 37.0 0.0 0.309524 0 . . none . SSTR1 66 . NM_001049 exon3 c.C1166T p.T389M GGATCACGACGCT . PASS Atlas-SNP KLF2 10365 hgsc.bcm.edu 37 19 16436026 16436026 + Splice_Site SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 70.0 28.0 83.0 0.0 0.4 0 . . none . KLF2 10 . NM_016270 exon2 c.76-1G>A . CCCGCAGCGCTGG . PASS Atlas-SNP GABBR1 2550 hgsc.bcm.edu 37 6 29578720 29578720 + Silent SNP G G T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 84.0 11.0 90.0 0.0 0.130952 0 . . none . GABBR1 95 . NM_001470 exon14 c.C1689A p.S563S TGTTTTGGACCAG . PASS Atlas-SNP C19orf80 55908 hgsc.bcm.edu 37 19 11350375 11350375 + Missense_Mutation SNP C C T rs368909299 TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 81.0 25.0 108.0 0.0 0.308642 0 . . weak . C19orf80 8 . NM_018687 exon1 c.C62T p.A21V CCTCAGCGGCCCC . PASS Atlas-SNP CEP104 9731 hgsc.bcm.edu 37 1 3742332 3742332 + Missense_Mutation SNP T T C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 57.0 26.0 90.0 0.0 0.45614 0 . . none . CEP104 79 . NM_014704 exon18 c.A2354G p.H785R TTGCAGTGGTCAC . PASS Atlas-SNP ID3 3399 hgsc.bcm.edu 37 1 23885712 23885712 + Missense_Mutation SNP A A G novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 112.0 61.0 130.0 0.0 0.544643 0 . . none . ID3 29 . NM_002167 exon1 c.T206C p.I69T TGTAGGATTTCCA . PASS Atlas-SNP DAB1 1600 hgsc.bcm.edu 37 1 57481087 57481087 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 59.0 5.0 73.0 0.0 0.0847458 0 . . none . DAB1 129 . NM_021080 exon14 c.G913A p.A305T GGACAGCGCCCAT . PASS Atlas-SNP MUC21 394263 hgsc.bcm.edu 37 6 30954870 30954870 + Silent SNP T T C rs9262377 bycluster TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 45.0 5.0 30.0 1.0 0.111111 0.0333333 . . weak MUC21,rectum,carcinoma,0,1 MUC21 98 1 NM_001010909 exon2 c.T918C p.S306S GTCCAGTACGACC . scavenged Atlas-SNP SLC19A3 80704 hgsc.bcm.edu 37 2 228564154 228564154 + Missense_Mutation SNP T T G novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 101.0 44.0 97.0 0.0 0.435644 0 . . none . SLC19A3 62 . NM_025243 exon3 c.A277C p.T93P GCCAGGTAATGAT . PASS Atlas-SNP DOCK7 85440 hgsc.bcm.edu 37 1 62962115 62962115 + Silent SNP G G T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 248.0 105.0 247.0 1.0 0.423387 0.00404858 . . none . DOCK7 184 . NM_001271999 exon38 c.C4791A p.G1597G AGATGTGCCCACC . PASS Atlas-SNP CYTB 0 hgsc.bcm.edu 37 MT 15873 15873 + Missense_Mutation SNP T T C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 22.0 14.0 19.0 0.0 0.636364 0 . . none . . . . ENST00000361789 exon1 c.T1127C p.M376T ACAAAATACTCAA . PASS Atlas-SNP ND5 0 hgsc.bcm.edu 37 MT 13531 13531 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 14.0 12.0 21.0 0.0 0.857143 0 . . none . . . . ENST00000361567 exon1 c.G1195A p.A399T GAAACCGCAAACA . PASS Atlas-SNP SLC29A2 3177 hgsc.bcm.edu 37 11 66133453 66133453 + Missense_Mutation SNP T T C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 58.0 23.0 89.0 0.0 0.396552 0 . . none . SLC29A2 24 . NM_001532 exon10 c.A1013G p.N338S ATGATGTTGAAGA . PASS Atlas-SNP TMEM132C 92293 hgsc.bcm.edu 37 12 129189698 129189698 + Missense_Mutation SNP G G A rs116496800 bycluster;byfrequency;by1000genomes TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 55.0 25.0 59.0 0.0 0.454545 0 G|0.997;A|0.003 0.003 strong . TMEM132C 142 . NM_001136103 exon9 c.G2185A p.D729N ATCTACGACACCA . PASS Atlas-SNP EPHA2 1969 hgsc.bcm.edu 37 1 16475116 16475116 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 41.0 21.0 30.0 0.0 0.512195 0 . . none . EPHA2 102 . NM_004431 exon3 c.G580A p.V194I CACGGACGGAGAG . PASS Atlas-SNP EML1 2009 hgsc.bcm.edu 37 14 100402447 100402447 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 134.0 61.0 136.0 0.0 0.455224 0 . . none . EML1 97 . NM_001008707 exon19 c.G2048A p.R683Q ACACGCGAGTGGG . PASS Atlas-SNP HVCN1 84329 hgsc.bcm.edu 37 12 111089042 111089042 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 87.0 35.0 71.0 0.0 0.402299 0 . . none HVCN1,caecum,carcinoma,-1,2 HVCN1 38 2 NM_032369 exon6 c.G623A p.R208Q GCCACCCGCCACA . PASS Atlas-SNP COL4A3 1285 hgsc.bcm.edu 37 2 228125811 228125811 + Silent SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 72.0 31.0 81.0 0.0 0.430556 0 . . none . COL4A3 293 . NM_000091 exon20 c.C1128T p.P376P TGGTCCCCCCGGA . PASS Atlas-SNP ABCC11 85320 hgsc.bcm.edu 37 16 48209258 48209258 + Silent SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 95.0 45.0 77.0 1.0 0.473684 0.012987 . . none ABCC11,right_upper_lobe,carcinoma,-2,1 ABCC11 177 1 NM_033151 exon25 c.C3609T p.G1203G GTCCACGCCGTCA . scavenged Atlas-SNP ZIC1 7545 hgsc.bcm.edu 37 3 147128137 147128137 + Missense_Mutation SNP C C A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 54.0 14.0 60.0 0.0 0.259259 0 . . none . ZIC1 141 . NM_003412 exon1 c.C238A p.H80N GGCCATCACCATC . PASS Atlas-SNP THOC1 9984 hgsc.bcm.edu 37 18 216549 216549 + Silent SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 100.0 79.0 252.0 0.0 0.79 0 . . none . THOC1 43 . NM_005131 exon19 c.G1539A p.Q513Q AAACTGCTGGTTG . PASS Atlas-SNP MBD5 55777 hgsc.bcm.edu 37 2 149226791 149226791 + Nonsense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 130.0 51.0 138.0 0.0 0.392308 0 . . none . MBD5 164 . NM_018328 exon9 c.C1279T p.Q427X AGAGTTCAGCATT . PASS Atlas-SNP APOBEC3D 140564 hgsc.bcm.edu 37 22 39421643 39421643 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 160.0 66.0 192.0 0.0 0.4125 0 . . none . APOBEC3D 61 . NM_152426 exon4 c.C572T p.A191V ATTATGCATCCCT . PASS Atlas-SNP PSAPL1 768239 hgsc.bcm.edu 37 4 7436077 7436077 + Missense_Mutation SNP T T A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 64.0 21.0 81.0 0.0 0.328125 0 . . none . PSAPL1 51 . NM_001085382 exon1 c.A530T p.Q177L GGCGCCTGGCGGG . PASS Atlas-SNP ABCC1 4363 hgsc.bcm.edu 37 16 16146585 16146585 + Missense_Mutation SNP T T C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 127.0 52.0 124.0 0.0 0.409449 0 . . none . ABCC1 156 . NM_004996 exon11 c.T1385C p.L462P AGAATCTGGGCCC . PASS Atlas-SNP KRTAP4-11 653240 hgsc.bcm.edu 37 17 39274360 39274360 + Missense_Mutation SNP A A T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 85.0 4.0 68.0 0.0 0.0470588 0 . . none KRTAP4-11,NS,carcinoma,0,1 KRTAP4-11 94 1 NM_033059 exon1 c.T208A p.C70S AGATGCAGCATCT . scavenged Atlas-SNP KIAA1549L 25758 hgsc.bcm.edu 37 11 33667420 33667420 + Silent SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 128.0 64.0 126.0 0.0 0.5 0 . . none . . . . NM_012194 exon16 c.C4707T p.H1569H GGGCCACGCAGGC . PASS Atlas-SNP HELZ 9931 hgsc.bcm.edu 37 17 65116527 65116527 + Nonsense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 446.0 195.0 437.0 0.0 0.43722 0 . . none . HELZ 160 . NM_014877 exon27 c.C3832T p.R1278X CATTTCGATTTTG . PASS Atlas-SNP LRRTM4 80059 hgsc.bcm.edu 37 2 77745577 77745577 + Missense_Mutation SNP G G T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 141.0 43.0 191.0 0.0 0.304965 0 . . none . LRRTM4 334 . NM_024993 exon3 c.C1418A p.S473Y CTTTCAGACTCTC . PASS Atlas-SNP RGS3 5998 hgsc.bcm.edu 37 9 116346320 116346320 + Silent SNP G G T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 74.0 22.0 64.0 0.0 0.297297 0 . . none . RGS3 251 . NM_144488 exon21 c.G2628T p.S876S CTGCTCGGGAGAT . PASS Atlas-SNP PDE4A 5141 hgsc.bcm.edu 37 19 10571742 10571742 + Missense_Mutation SNP T T A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 81.0 30.0 36.0 0.0 0.37037 0 . . none . PDE4A 236 . NM_001111307 exon11 c.T1428A p.D476E TGTGGATCACCCT . PASS Atlas-SNP ANXA11 311 hgsc.bcm.edu 37 10 81932570 81932570 + Silent SNP A A T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 46.0 6.0 55.0 0.0 0.130435 0 . . none . ANXA11 32 . NM_145868 exon3 c.T48A p.A16A TGGTGCAGCTGGT . PASS Atlas-SNP DNER 92737 hgsc.bcm.edu 37 2 230312065 230312065 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 209.0 111.0 262.0 0.0 0.5311 0 . . none . DNER 129 . NM_139072 exon8 c.G1453A p.V485M TGCCCACGCTGCG . PASS Atlas-SNP SYNDIG1 79953 hgsc.bcm.edu 37 20 24565617 24565617 + Silent SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 105.0 52.0 131.0 0.0 0.495238 0 . . none . SYNDIG1 58 . NM_024893 exon3 c.C606T p.Y202Y CTTCTACTTGTCC . PASS Atlas-SNP CDH2 1000 hgsc.bcm.edu 37 18 25572711 25572711 + Missense_Mutation SNP C C T rs200263846 bycluster TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 152.0 12.0 155.0 0.0 0.0789474 0 . . weak . CDH2 194 . NM_001792 exon9 c.G1252A p.A418T ACACTGCGTTCCA . PASS Atlas-SNP IZUMO2 126123 hgsc.bcm.edu 37 19 50657864 50657864 + Missense_Mutation SNP C C T rs189762069 bycluster;by1000genomes TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 32.0 13.0 37.0 0.0 0.40625 0 C|0.999;T|0.001 0.001 strong . IZUMO2 26 . NM_152358 exon6 c.G616A p.V206M AGACCACGATGAC . PASS Atlas-SNP PTPRF 5792 hgsc.bcm.edu 37 1 44085859 44085859 + Silent SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 176.0 81.0 198.0 0.0 0.460227 0 . . none . PTPRF 172 . NM_002840 exon30 c.C5205T p.I1735I CATCATCGTCATG . PASS Atlas-SNP DCHS1 8642 hgsc.bcm.edu 37 11 6652558 6652558 + Silent SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 139.0 11.0 114.0 0.0 0.0791367 0 . . none . DCHS1 277 . NM_003737 exon8 c.C3756T p.I1252I GTACAAGATGGTC . PASS Atlas-SNP OSBPL6 114880 hgsc.bcm.edu 37 2 179255816 179255816 + Missense_Mutation SNP C C A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 158.0 75.0 184.0 0.0 0.474684 0 . . none OSBPL6,NS,carcinoma,-1,1 OSBPL6 178 1 NM_001201480 exon23 c.C2393A p.S798Y GGAATTCTAACAT . PASS Atlas-SNP HOXA9 3205 hgsc.bcm.edu 37 7 27204938 27204938 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 58.0 21.0 61.0 0.0 0.362069 0 . . none . HOXA9 20 . NM_152739 exon1 c.G139A p.E47K GGTGCTCGGCCAG . PASS Atlas-SNP MYO5C 55930 hgsc.bcm.edu 37 15 52487626 52487626 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 221.0 99.0 189.0 0.0 0.447964 0 . . none . MYO5C 162 . NM_018728 exon40 c.C5024T p.P1675L TCTATAGGTGTGT . PASS Atlas-SNP SHANK1 50944 hgsc.bcm.edu 37 19 51170329 51170329 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 47.0 26.0 37.0 0.0 0.553191 0 . . none . SHANK1 210 . NM_016148 exon22 c.G4888A p.E1630K CCACCTCGCTGTC . PASS Atlas-SNP NEK7 140609 hgsc.bcm.edu 37 1 198288596 198288596 + Missense_Mutation SNP G G A rs114884409 bycluster;byfrequency;by1000genomes TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 118.0 40.0 108.0 0.0 0.338983 0 G|0.999;A|0.001 0.001 strong NEK7,NS,carcinoma,0,1 NEK7 42 1 NM_133494 exon10 c.G853A p.V285I CCAGACGTCACCT . PASS Atlas-SNP KRT25 147183 hgsc.bcm.edu 37 17 38906791 38906791 + Missense_Mutation SNP G G C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 180.0 66.0 184.0 0.0 0.366667 0 . . none KRT25,NS,carcinoma,0,4 KRT25 63 4 NM_181534 exon6 c.C1016G p.A339G ATCTGCGCCAGCT . PASS Atlas-SNP MTNR1B 4544 hgsc.bcm.edu 37 11 92714681 92714681 + Missense_Mutation SNP C C A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 139.0 10.0 123.0 0.0 0.0719424 0 . . none . MTNR1B 75 . NM_005959 exon2 c.C292A p.L98I CTAATCCTCGTGG . PASS Atlas-SNP CYYR1 116159 hgsc.bcm.edu 37 21 27938630 27938630 + Missense_Mutation SNP G G A rs79874795 bycluster;byfrequency;by1000genomes TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 102.0 57.0 108.0 0.0 0.558824 0 G|0.994;A|0.006 0.006 strong . CYYR1 38 . NM_052954 exon2 c.C131T p.T44M TAGGGCGTGGTTC . PASS Atlas-SNP GNS 2799 hgsc.bcm.edu 37 12 65153012 65153012 + Silent SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 32.0 14.0 44.0 0.0 0.4375 0 . . none . GNS 41 . NM_002076 exon1 c.C45T p.S15S GCGGGGGCTGCCC . PASS Atlas-SNP ARC 23237 hgsc.bcm.edu 37 8 143695095 143695095 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 21.0 17.0 20.0 0.0 0.809524 0 . . none . ARC 34 . NM_015193 exon1 c.G538A p.A180T CGCCAGCGGCTGG . PASS Atlas-SNP CPT1B 1375 hgsc.bcm.edu 37 22 51012005 51012005 + Silent SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 37.0 17.0 30.0 0.0 0.459459 0 . . none . CPT1B 61 . NM_001145135 exon10 c.C1110T p.D370D GGAGGGGTCGTCC . PASS Atlas-SNP ANKS1A 23294 hgsc.bcm.edu 37 6 34957033 34957033 + Silent SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 142.0 67.0 152.0 0.0 0.471831 0 . . none ANKS1A,NS,carcinoma,0,1 ANKS1A 123 1 NM_015245 exon9 c.G1242A p.P414P GCCACCGCCCGAT . PASS Atlas-SNP TRAPPC8 22878 hgsc.bcm.edu 37 18 29511319 29511319 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 188.0 90.0 196.0 0.0 0.478723 0 . . none . TRAPPC8 126 . NM_014939 exon2 c.G325A p.A109T CTCCTGCTGTAAT . PASS Atlas-SNP BTG1 694 hgsc.bcm.edu 37 12 92539174 92539174 + Missense_Mutation SNP C C G rs200623021 by1000genomes;alternate_allele TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 132.0 68.0 124.0 0.0 0.515152 0 C|1.000;T|0.000 . alt BTG1,NS,lymphoid_neoplasm,0,1 BTG1 30 1 NM_001731 exon1 c.G138C p.E46D CAGCAGCTCCTGC . PASS Atlas-SNP THAP6 152815 hgsc.bcm.edu 37 4 76452235 76452235 + Silent SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 225.0 95.0 207.0 0.0 0.422222 0 . . none THAP6,NS,carcinoma,0,1 THAP6 14 1 NM_144721 exon5 c.C480T p.G160G GATCGGCGAGCTA . PASS Atlas-SNP CDIPT 10423 hgsc.bcm.edu 37 16 29870830 29870830 + Silent SNP G G T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 95.0 5.0 90.0 0.0 0.0526316 0 . . none . CDIPT 15 . NM_006319 exon5 c.C429A p.T143T ACACAAGGTGAAC . PASS Atlas-SNP EPHA8 2046 hgsc.bcm.edu 37 1 22915717 22915717 + Missense_Mutation SNP G G A rs199679973 TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 72.0 34.0 80.0 0.0 0.472222 0 G|0.999;A|0.001 0.001 weak EPHA8_ENST00000374644,colon,carcinoma,0,1 EPHA8 221 1 NM_001006943 exon5 c.G1333A p.V445I AACTCCGTCCCGC . PASS Atlas-SNP TFR2 7036 hgsc.bcm.edu 37 7 100226979 100226979 + Silent SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 33.0 22.0 37.0 0.0 0.666667 0 . . none . TFR2 53 . NM_003227 exon10 c.C1287T p.I429I GGCCCCGATGACA . PASS Atlas-SNP PCDHA3 56145 hgsc.bcm.edu 37 5 140180941 140180941 + Silent SNP G G A rs201478898 byfrequency TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 102.0 13.0 82.0 2.0 0.127451 0.0243902 G|0.926;A|0.074 0.074 strong PCDHA3_ENST00000522353,NS,haematopoietic_neoplasm,0,2 PCDHA3 396 2 NM_031497 exon1 c.G159A p.G53G CCTGGGGCTGGAG . scavenged Atlas-SNP PRSS16 10279 hgsc.bcm.edu 37 6 27219672 27219672 + Silent SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 142.0 63.0 132.0 0.0 0.443662 0 . . none . PRSS16 66 . NM_005865 exon8 c.G861A p.A287A GGGGGCGCTGCAG . PASS Atlas-SNP LRP1B 53353 hgsc.bcm.edu 37 2 141571285 141571285 + Missense_Mutation SNP A A G novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 278.0 96.0 289.0 0.0 0.345324 0 . . none . LRP1B 1315 . NM_018557 exon32 c.T5300C p.L1767S ACTTCTAAATTAC . PASS Atlas-SNP ASB12 142689 hgsc.bcm.edu 37 X 63444983 63444983 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 71.0 64.0 90.0 0.0 0.901408 0 . . none . ASB12 102 . NM_130388 exon2 c.G548A p.G183D AGGGGGCCAGAAC . PASS Atlas-SNP TFAP2B 7021 hgsc.bcm.edu 37 6 50791293 50791293 + Silent SNP C C A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 121.0 56.0 160.0 0.0 0.46281 0 . . none . TFAP2B 91 . NM_003221 exon2 c.C255A p.P85P GGACCCCTACTCC . PASS Atlas-SNP P2RY8 286530 hgsc.bcm.edu 37 X 1585333 1585333 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 40.0 34.0 84.0 0.0 0.85 0 . . none . P2RY8 53 . NM_178129 exon2 c.G119A p.G40D AGGTTGCCCGGGA . PASS Atlas-SNP DLGAP3 58512 hgsc.bcm.edu 37 1 35351360 35351360 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 45.0 20.0 52.0 0.0 0.444444 0 . . none . DLGAP3 107 . NM_001080418 exon5 c.C1633T p.P545S CCGGCGGGATGGG . PASS Atlas-SNP MAF1 84232 hgsc.bcm.edu 37 8 145160665 145160665 + Missense_Mutation SNP G G T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 49.0 43.0 38.0 0.0 0.877551 0 . . none . MAF1 16 . NM_032272 exon2 c.G79T p.G27C ATCATTGGCAGGT . PASS Atlas-SNP NDUFS1 4719 hgsc.bcm.edu 37 2 207017231 207017231 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 209.0 84.0 210.0 0.0 0.401914 0 . . none NDUFS1,NS,carcinoma,-1,3 NDUFS1 82 3 NM_001199984 exon3 c.G107A p.R36Q GTTGTTCGAACTG . PASS Atlas-SNP CPNE2 221184 hgsc.bcm.edu 37 16 57171163 57171163 + Missense_Mutation SNP C C G novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 58.0 30.0 78.0 0.0 0.517241 0 . . none . CPNE2 48 . NM_152727 exon14 c.C1271G p.A424G GGTTTGCGGCCCA . PASS Atlas-SNP C2orf81 388963 hgsc.bcm.edu 37 2 74642291 74642291 + Missense_Mutation SNP A A G rs116859876 bycluster;byfrequency;by1000genomes TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 86.0 11.0 82.0 0.0 0.127907 0 A|0.959;G|0.041 0.041 strong . C2orf81 23 . NM_001145054 exon4 c.T932C p.V311A CCGCCCACAGAGG . PASS Atlas-SNP CHURC1-FNTB 100529261 hgsc.bcm.edu 37 14 65520040 65520040 + Missense_Mutation SNP C C T rs374785351 TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 59.0 26.0 53.0 0.0 0.440678 0 . . weak FNTB,rectum,carcinoma,-1,1 . . 1 NM_001202559 exon12 c.C1223T p.A408V GCCCTGCGGGGGG . PASS Atlas-SNP KRTCAP2 200185 hgsc.bcm.edu 37 1 155145757 155145757 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 92.0 83.0 98.0 0.0 0.902174 0 . . none . KRTCAP2 15 . NM_173852 exon1 c.C22T p.R8W TGAACCGGGTGCG . PASS Atlas-SNP MYH8 4626 hgsc.bcm.edu 37 17 10293802 10293802 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 325.0 145.0 327.0 0.0 0.446154 0 . . none . MYH8 346 . NM_002472 exon40 c.G5783A p.R1928Q ACCTCTCGGCTCT . PASS Atlas-SNP MYD88 4615 hgsc.bcm.edu 37 3 38182292 38182292 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 124.0 53.0 130.0 0.0 0.427419 0 . . none MYD88,NS,lymphoid_neoplasm,0,8 MYD88 900 8 NM_001172567 exon4 c.G752A p.S251N TGCAGAGCAAGGA . PASS Atlas-SNP SH3GLB2 56904 hgsc.bcm.edu 37 9 131790419 131790419 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 41.0 17.0 28.0 0.0 0.414634 0 . . none . SH3GLB2 32 . NM_020145 exon1 c.G15A p.M5I CTTCTTCATGTTG . PASS Atlas-SNP EPHA5 2044 hgsc.bcm.edu 37 4 66356412 66356412 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 120.0 55.0 146.0 0.0 0.458333 0 . . none . EPHA5 315 . NM_004439 exon5 c.G1085A p.R362Q GCATTCCGAGGAG . PASS Atlas-SNP DGCR8 54487 hgsc.bcm.edu 37 22 20077332 20077332 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 130.0 59.0 117.0 0.0 0.453846 0 . . none . DGCR8 53 . NM_001190326 exon4 c.C1021T p.R341W AGCATACGGGTAG . PASS Atlas-SNP SLCO6A1 133482 hgsc.bcm.edu 37 5 101834271 101834271 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 125.0 49.0 121.0 0.0 0.392 0 . . none . SLCO6A1 153 . NM_173488 exon1 c.G278A p.C93Y ACTAAGCAGCCCA . PASS Atlas-SNP C12orf52 84934 hgsc.bcm.edu 37 12 113624824 113624824 + Silent SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 56.0 23.0 36.0 0.0 0.410714 0 . . none . C12orf52 19 . NM_032848 exon3 c.C273T p.T91T CCCCACCCTCACA . PASS Atlas-SNP DAB1 1600 hgsc.bcm.edu 37 1 57480789 57480789 + Missense_Mutation SNP T T G novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 98.0 38.0 126.0 0.0 0.387755 0 . . none . DAB1 129 . NM_021080 exon14 c.A1211C p.D404A GGCTTGTCGGTCT . PASS Atlas-SNP MAP4K3 8491 hgsc.bcm.edu 37 2 39552696 39552696 + Missense_Mutation SNP T T A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 252.0 102.0 253.0 1.0 0.404762 0.00395257 . . none . MAP4K3 109 . NM_001270425 exon12 c.A881T p.H294L GTGGAATGATCTG . PASS Atlas-SNP XIRP2 129446 hgsc.bcm.edu 37 2 168100213 168100213 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 150.0 68.0 222.0 0.0 0.453333 0 . . none XIRP2,colon,carcinoma,0,1 XIRP2 914 1 NM_152381 exon9 c.C2311T p.R771W ACAGCACGGTGGA . PASS Atlas-SNP NLRP5 126206 hgsc.bcm.edu 37 19 56538497 56538497 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 75.0 30.0 72.0 0.0 0.4 0 . . none . NLRP5 217 . NM_153447 exon7 c.G898A p.V300M AGGATCGTGCTGT . PASS Atlas-SNP STRN 6801 hgsc.bcm.edu 37 2 37193498 37193498 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 65.0 27.0 52.0 0.0 0.415385 0 . . none . STRN 71 . NM_003162 exon1 c.G109A p.A37T CAGCCGCCCCGTC . PASS Atlas-SNP MED16 10025 hgsc.bcm.edu 37 19 880103 880103 + Missense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 98.0 37.0 102.0 0.0 0.377551 0 . . none . MED16 61 . NM_005481 exon8 c.G1187A p.R396Q GAGAGCCGGTGCA . PASS Atlas-SNP DSEL 92126 hgsc.bcm.edu 37 18 65178778 65178778 + Nonsense_Mutation SNP G G T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 81.0 32.0 87.0 0.0 0.395062 0 . . none DSEL,colon,carcinoma,0,2 DSEL 196 2 NM_032160 exon2 c.C3098A p.S1033X CTCATCGAAGCTC . PASS Atlas-SNP MLL3 58508 hgsc.bcm.edu 37 7 151896389 151896389 + Silent SNP C C T rs200269228 by1000genomes TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 198.0 79.0 218.0 0.0 0.39899 0 C|1.000;T|0.000 0.000 strong . MLL3 1564 . NM_170606 exon27 c.G4248A p.S1416S TGGAGCCGAGGAT . PASS Atlas-SNP ARID2 196528 hgsc.bcm.edu 37 12 46244016 46244016 + Nonsense_Mutation SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 182.0 78.0 211.0 0.0 0.428571 0 . . none ARID2,lower_third,carcinoma,0,1 ARID2 311 1 NM_152641 exon15 c.C2110T p.Q704X GTCATTCAAAGTA . PASS Atlas-SNP OR2T4 127074 hgsc.bcm.edu 37 1 248525640 248525640 + Missense_Mutation SNP T T C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 64.0 28.0 12.0 2.0 0.4375 0.166667 . . none OR2T4,brain,glioma,+1,1 OR2T4 126 1 NM_001004696 exon1 c.T758C p.I253T TACTCATCCTCCT . scavenged Atlas-SNP PRDM9 56979 hgsc.bcm.edu 37 5 23526712 23526712 + Silent SNP T T C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 85.0 45.0 98.0 0.0 0.529412 0 . . none . PRDM9 344 . NM_020227 exon11 c.T1515C p.N505N AGTGAATCCAGGG . PASS Atlas-SNP DCDC5 100506627 hgsc.bcm.edu 37 11 30915852 30915852 + Silent SNP G G T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 177.0 80.0 186.0 0.0 0.451977 0 . . none . DCDC5 137 . NM_020869 exon16 c.C2157A p.G719G GGTCCAGCCTCCT . PASS Atlas-SNP PLXDC2 84898 hgsc.bcm.edu 37 10 20432282 20432282 + Silent SNP A A T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 210.0 83.0 215.0 2.0 0.395238 0.00930233 . . none PLXDC2,NS,carcinoma,+1,2 PLXDC2 108 2 NM_032812 exon5 c.A600T p.A200A CATAGCACCTTTA . scavenged Atlas-SNP DNAJB3 414061 hgsc.bcm.edu 37 2 234652351 234652351 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 97.0 41.0 107.0 0.0 0.42268 0 . . none . . . . NM_001001394 exon1 c.C212T p.A71V GCCCCCGCCTCGC . PASS Atlas-SNP WDPCP 51057 hgsc.bcm.edu 37 2 63661025 63661025 + Nonsense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 163.0 64.0 222.0 1.0 0.392638 0.0045045 . . none WDPCP,colon,carcinoma,+1,3 WDPCP 79 3 NM_015910 exon9 c.C679T p.R227X GATGTCGCTCTGT . scavenged Atlas-SNP GPATCH2L 55668 hgsc.bcm.edu 37 14 76620825 76620825 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 71.0 34.0 99.0 0.0 0.478873 0 . . none . . . . NM_017926 exon2 c.G119A p.R40Q AGCTTCGGAAACG . PASS Atlas-SNP PCDH1 5097 hgsc.bcm.edu 37 5 141243763 141243763 + Missense_Mutation SNP G G C rs374090402 alternate_allele TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 60.0 17.0 85.0 0.0 0.283333 0 . . alt . PCDH1 119 . NM_032420 exon3 c.C2133G p.N711K GGGTGCGTTGTCA . PASS Atlas-SNP NDP 4693 hgsc.bcm.edu 37 X 43809178 43809178 + Missense_Mutation SNP C C T rs104894867 bycluster;alternate_allele TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 74.0 69.0 95.0 0.0 0.932432 0 . . alt . NDP 12 . NM_000266 exon3 c.G269A p.R90H GAGGAACGGAAGG . PASS Atlas-SNP MRVI1 10335 hgsc.bcm.edu 37 11 10655535 10655535 + Silent SNP G G A rs373779712 TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 202.0 74.0 249.0 0.0 0.366337 0 . . weak . MRVI1 113 . NM_001206880 exon3 c.C309T p.T103T TTTGTCGGTTTCT . PASS Atlas-SNP PSAPL1 768239 hgsc.bcm.edu 37 4 7436076 7436076 + Missense_Mutation SNP C C A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 63.0 21.0 81.0 0.0 0.333333 0 . . none . PSAPL1 51 . NM_001085382 exon1 c.G531T p.Q177H AGGCGCCTGGCGG . PASS Atlas-SNP SEC24C 9632 hgsc.bcm.edu 37 10 75526107 75526107 + Splice_Site SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 85.0 30.0 86.0 0.0 0.352941 0 . . none . SEC24C 86 . NM_004922 exon13 c.1608-1G>A . TCTACAGGGAGGG . PASS Atlas-SNP VEZF1 7716 hgsc.bcm.edu 37 17 56058016 56058016 + Missense_Mutation SNP A A T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 197.0 37.0 280.0 1.0 0.187817 0.00357143 . . none VEZF1,NS,carcinoma,-2,1 VEZF1 50 1 NM_007146 exon4 c.T924A p.H308Q CTGCCCATGAGTC . scavenged Atlas-SNP CCNC 892 hgsc.bcm.edu 37 6 99998133 99998133 + Missense_Mutation SNP T T G novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 83.0 67.0 155.0 0.0 0.807229 0 . . none . CCNC 23 . NM_005190 exon8 c.A491C p.Q164P ATGTCCTGCACAT . PASS Atlas-SNP PHLDB3 653583 hgsc.bcm.edu 37 19 44006279 44006279 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 125.0 61.0 132.0 0.0 0.488 0 . . none Q96HZ0_HUMAN,rectum,carcinoma,0,4 PHLDB3 30 4 NM_198850 exon3 c.C370T p.R124C TCTGGCGCTGTAG . PASS Atlas-SNP SIX6 4990 hgsc.bcm.edu 37 14 60976600 60976600 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 91.0 42.0 88.0 0.0 0.461538 0 . . none . SIX6 27 . NM_007374 exon1 c.G484A p.A162T GAGCTCGCCCAGG . PASS Atlas-SNP KCTD8 386617 hgsc.bcm.edu 37 4 44450163 44450163 + Silent SNP C C T novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 67.0 36.0 81.0 0.0 0.537313 0 . . none . KCTD8 96 . NM_198353 exon1 c.G378A p.E126E CTCCTTCTCGGGG . PASS Atlas-SNP MUC15 143662 hgsc.bcm.edu 37 11 26582712 26582712 + Missense_Mutation SNP T T C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 283.0 22.0 295.0 0.0 0.0777385 0 . . none . MUC15 88 . NM_001135091 exon5 c.A986G p.Y329C GGATTGTAGTAGC . PASS Atlas-SNP EPPK1 83481 hgsc.bcm.edu 37 8 144940706 144940706 + Missense_Mutation SNP C C T rs112377501 bycluster;byfrequency TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 80.0 4.0 62.0 2.0 0.05 0.0322581 C|0.993;T|0.007 0.007 strong EPPK1,NS,carcinoma,0,9 EPPK1 199 9 NM_031308 exon1 c.G6716A p.R2239H TCCTGGCGGCCGG . scavenged Atlas-SNP KRT17 3872 hgsc.bcm.edu 37 17 39775873 39775873 + Silent SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 358.0 157.0 354.0 0.0 0.438547 0 . . none . KRT17 57 . NM_000422 exon8 c.C1272T p.R424R CTGCTCGCGGGAG . PASS Atlas-SNP CSNK1A1 1452 hgsc.bcm.edu 37 5 148930448 148930448 + Missense_Mutation SNP G G C novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 95.0 90.0 106.0 0.0 0.947368 0 . . none . CSNK1A1 63 . NM_001025105 exon1 c.C80G p.S27C CCGAAGGAGCCAG . PASS Atlas-SNP AWAT2 158835 hgsc.bcm.edu 37 X 69261726 69261726 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 108.0 89.0 123.0 0.0 0.824074 0 . . none . AWAT2 36 . NM_001002254 exon7 c.C934T p.R312C GTTTACGTAGGGC . PASS Atlas-SNP DNAJC10 54431 hgsc.bcm.edu 37 2 183627529 183627529 + Splice_Site SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 266.0 136.0 272.0 0.0 0.511278 0 . . none . DNAJC10 76 . NM_018981 exon22 c.2265+1G>A . GCAAAGGTATGTC . PASS Atlas-SNP CNNM1 26507 hgsc.bcm.edu 37 10 101090081 101090081 + Missense_Mutation SNP G G A novel TCGA-FF-A7CX-01A-12D-A382-10 TCGA-FF-A7CX-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4d394512-e495-472b-89e0-bb402f714949 3a9f03ca-8618-47eb-80a8-120d835ab714 104.0 8.0 102.0 0.0 0.0769231 0 . . none CNNM1_ENST00000356713,NS,carcinoma,-1,1 CNNM1 101 1 NM_020348 exon1 c.G937A p.G313R GGCACCGGGGAAG . PASS Atlas-SNP