Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
AKR1C4	1109	hgsc.bcm.edu	37	10	5248268	5248268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	143.0	11.0	181.0	0.0	0.0769231	0	.	.	none	.	AKR1C4	57	.	NM_001818	exon5	c.G478A	p.A160T	GGATTGGCCAAGT	.	PASS	Atlas-SNP
IGSF3	3321	hgsc.bcm.edu	37	1	117142613	117142613	+	Missense_Mutation	SNP	C	C	T	rs76151115	bycluster;byfrequency	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	46.0	10.0	39.0	0.0	0.217391	0	C|0.967;T|0.033	0.033	strong	.	IGSF3	294	.	NM_001542	exon8	c.G2039A	p.R680Q	GCCAGTCGCGTCC	.	PASS	Atlas-SNP
CHD5	26038	hgsc.bcm.edu	37	1	6196687	6196687	+	Silent	SNP	G	G	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	72.0	7.0	85.0	0.0	0.0972222	0	.	.	none	.	CHD5	267	.	NM_015557	exon17	c.C2586A	p.V862V	GTTTAAGACCCTA	.	PASS	Atlas-SNP
WDR87	83889	hgsc.bcm.edu	37	19	38384696	38384696	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	114.0	8.0	109.0	0.0	0.0701754	0	.	.	none	.	WDR87	191	.	NM_031951	exon4	c.G1530A	p.R510R	GAGAGGCCGCAGT	.	PASS	Atlas-SNP
CD7	924	hgsc.bcm.edu	37	17	80274183	80274183	+	Missense_Mutation	SNP	G	G	C	rs199986856	by1000genomes;alternate_allele	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	50.0	13.0	87.0	1.0	0.26	0.0114943	G|0.999;A|0.001	.	alt	CD7,rectum,carcinoma,0,2	CD7	25	2	NM_006137	exon3	c.C500G	p.A167G	GCAGAGGCTGTCT	.	scavenged	Atlas-SNP
EFHC1	114327	hgsc.bcm.edu	37	6	52344014	52344014	+	Silent	SNP	C	C	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	60.0	5.0	81.0	0.0	0.0833333	0	.	.	none	.	EFHC1	68	.	NM_018100	exon8	c.C1458G	p.G486G	CTATGGCCCCAGT	.	PASS	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	37	9	2081900	2081900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	92.0	11.0	94.0	0.0	0.119565	0	.	.	none	SMARCA2_ENST00000349721,NS,carcinoma,+2,2	SMARCA2	313	2	NM_139045	exon15	c.G2253A	p.M751I	TGAAATGGGGCTT	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195505836	195505836	+	Silent	SNP	G	G	A	rs78985720	alternate_allele	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	71.0	8.0	63.0	1.0	0.112676	0.015873	A|1.000;|0.000	1.000	alt	MUC4_ENST00000463781,NS,carcinoma,0,19	MUC4	1505	19	NM_018406	exon2	c.C12615T	p.H4205H	GGTGGCGTGACCT	.	scavenged	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	37	10	73537483	73537483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	69.0	6.0	83.0	0.0	0.0869565	0	.	.	none	.	CDH23	365	.	NM_022124	exon37	c.C4892T	p.A1631V	ATAACGCGCCCAT	.	PASS	Atlas-SNP
TNFAIP3	7128	hgsc.bcm.edu	37	6	138200148	138200148	+	Silent	SNP	A	A	G	rs202233466		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	61.0	4.0	82.0	0.0	0.0655738	0	A|0.999;G|0.001	0.001	weak	.	TNFAIP3	340	.	NM_001270507	exon7	c.A1566G	p.Q522Q	GTGCCAAGCCTGC	.	PASS	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	37	18	56171335	56171335	+	Silent	SNP	C	C	T	rs199833082	by1000genomes	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	88.0	7.0	121.0	0.0	0.0795455	0	C|1.000;T|0.000	0.000	strong	ALPK2_ENST00000361673,NS,carcinoma,0,2	ALPK2	487	2	NM_052947	exon11	c.G6075A	p.P2025P	AGCATACGGGATA	.	PASS	Atlas-SNP
SDHC	6391	hgsc.bcm.edu	37	1	161326591	161326591	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	83.0	6.0	102.0	0.0	0.0722892	0	.	.	none	.	SDHC	19	.	NM_003001	exon5	c.C366T	p.F122F	TGTCTTCCCTCTC	.	PASS	Atlas-SNP
SLX4	84464	hgsc.bcm.edu	37	16	3633415	3633415	+	Missense_Mutation	SNP	G	G	T	rs140844106	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	99.0	4.0	108.0	0.0	0.040404	0	G|1.000;A|0.000	.	alt	.	SLX4	173	.	NM_032444	exon14	c.C4836A	p.D1612E	GCTCTCGTCCTCG	.	PASS	Atlas-SNP
DLX6	1750	hgsc.bcm.edu	37	7	96635385	96635385	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	18.0	4.0	22.0	0.0	0.222222	0	.	.	none	DLX6,right_lower_lobe,carcinoma,0,1	DLX6	37	1	NM_005222	exon1	c.G96A	p.Q32Q	GCAGCAGCAACAG	.	PASS	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112	bycluster;by1000genomes	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	47.0	17.0	15.0	0.0	0.361702	0	G|0.835;C|0.165	0.165	strong	MSH3_ENST00000265081,NS,carcinoma,0,1	MSH3	129	1	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	PASS	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	37	12	18443868	18443868	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	187.0	23.0	270.0	0.0	0.122995	0	.	.	none	.	PIK3C2G	315	.	NM_004570	exon4	c.C841G	p.Q281E	CCGTATCAGCTCT	.	PASS	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	37	11	6412880	6412880	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	36.0	13.0	33.0	0.0	0.361111	0	.	.	none	.	SMPD1	108	.	NM_000543	exon2	c.C585T	p.A195A	CCCAGCCCCAGGT	.	PASS	Atlas-SNP
CPZ	8532	hgsc.bcm.edu	37	4	8608504	8608504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	157.0	15.0	208.0	0.0	0.0955414	0	.	.	none	CPZ,rectum,carcinoma,+1,1	CPZ	95	1	NM_001014447	exon6	c.C947T	p.A316V	AGAACGCGCAGAA	.	PASS	Atlas-SNP
MSN	4478	hgsc.bcm.edu	37	X	64951012	64951012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	270.0	24.0	330.0	0.0	0.0888889	0	.	.	none	.	MSN	89	.	NM_002444	exon5	c.C511T	p.R171W	GAGGAGCGGATCC	.	PASS	Atlas-SNP
BCAR3	8412	hgsc.bcm.edu	37	1	94032925	94032925	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	97.0	4.0	116.0	0.0	0.0412371	0	.	.	none	.	BCAR3	62	.	NM_001261409	exon11	c.G2210C	p.C737S	ATTTCACAGCTCT	.	PASS	Atlas-SNP
PALM2	114299	hgsc.bcm.edu	37	9	112642863	112642863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	75.0	4.0	68.0	0.0	0.0533333	0	.	.	none	.	PALM2	51	.	NM_001037293	exon4	c.G165T	p.Q55H	GCTGCAGGGCATA	.	PASS	Atlas-SNP
PEX5	5830	hgsc.bcm.edu	37	12	7343151	7343151	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	43.0	9.0	37.0	2.0	0.209302	0.0540541	.	.	none	PEX5_ENST00000434354,colon,carcinoma,-2,3	PEX5	63	3	NM_001131023	exon2	c.G178C	p.A60P	CCAGGTGCAGCCT	.	scavenged	Atlas-SNP
OR9Q2	219957	hgsc.bcm.edu	37	11	57958226	57958226	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	52.0	12.0	58.0	1.0	0.230769	0.0172414	.	.	none	OR9Q2,NS,carcinoma,+2,1	OR9Q2	78	1	NM_001005283	exon1	c.C264T	p.H88H	GGAGCACGGCACA	.	scavenged	Atlas-SNP
DAO	1610	hgsc.bcm.edu	37	12	109278847	109278847	+	Missense_Mutation	SNP	G	G	A	rs200257378	bycluster;by1000genomes	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	56.0	8.0	79.0	0.0	0.142857	0	G|1.000;A|0.000	0.000	strong	DAO,colon,carcinoma,0,1	DAO	58	1	NM_001917	exon2	c.G65A	p.R22H	ATGAGCGCTACCA	.	PASS	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	37	9	73461394	73461394	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	128.0	14.0	156.0	0.0	0.109375	0	.	.	none	.	TRPM3	700	.	NM_001007471	exon4	c.C576T	p.N192N	TTCAAAGTTCTGC	.	PASS	Atlas-SNP
CDC42BPA	8476	hgsc.bcm.edu	37	1	227279603	227279603	+	Missense_Mutation	SNP	G	G	A	rs56119119	bycluster	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	83.0	5.0	120.0	0.0	0.060241	0	G|1.000;A|0.000	0.000	weak	CDC42BPA_ENST00000366769,NS,carcinoma,0,3	CDC42BPA	528	3	NM_003607	exon16	c.C2339T	p.T780M	TCACTCGTCAGCT	.	PASS	Atlas-SNP
AMOT	154796	hgsc.bcm.edu	37	X	112035109	112035109	+	Missense_Mutation	SNP	C	C	T	rs150900068		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	83.0	8.0	88.0	0.0	0.0963855	0	C|1.000;T|0.000	0.000	weak	.	AMOT	204	.	NM_001113490	exon6	c.G1877A	p.R626H	CGGAGACGGTGCT	.	PASS	Atlas-SNP
PPP1R36	145376	hgsc.bcm.edu	37	14	65054033	65054033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	95.0	4.0	105.0	0.0	0.0421053	0	.	.	none	.	.	.	.	NM_172365	exon10	c.G833T	p.R278M	GCAGGAGGCGTGA	.	PASS	Atlas-SNP
POLR2E	5434	hgsc.bcm.edu	37	19	1089905	1089905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	185.0	21.0	185.0	0.0	0.113514	0	.	.	none	.	POLR2E	22	.	NM_002695	exon6	c.A545G	p.Y182C	CCAAAGTAGCGCG	.	PASS	Atlas-SNP
MEF2A	4205	hgsc.bcm.edu	37	15	100211761	100211761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	90.0	6.0	106.0	2.0	0.0666667	0.0188679	.	.	none	MEF2A_ENST00000354410,NS,carcinoma,0,3	MEF2A	138	3	NM_005587	exon5	c.C295T	p.P99S	GACAGCCCAGACC	.	scavenged	Atlas-SNP
PHLDB1	23187	hgsc.bcm.edu	37	11	118526582	118526582	+	Missense_Mutation	SNP	C	C	T	rs149980232	bycluster;by1000genomes	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	38.0	10.0	42.0	0.0	0.263158	0	C|1.000;T|0.000	0.000	strong	.	PHLDB1	103	.	NM_001144758	exon22	c.C3973T	p.R1325C	TTTTTCCGCTTCA	.	PASS	Atlas-SNP
DGKZ	8525	hgsc.bcm.edu	37	11	46387868	46387868	+	Missense_Mutation	SNP	A	A	G	rs1317826	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	17.0	7.0	0.0	0.0	0.411765	.	A|0.609;G|0.391	0.391	strong	.	DGKZ	199	.	NM_001105540	exon2	c.A62G	p.Q21R	GGCAGCAGCGGCC	.	PASS	Atlas-SNP
ZNF578	147660	hgsc.bcm.edu	37	19	53014878	53014878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	49.0	5.0	97.0	0.0	0.102041	0	.	.	none	.	.	.	.	NM_001099694	exon6	c.C1244T	p.S415L	ACCTTTCACGTCA	.	PASS	Atlas-SNP
CD7	924	hgsc.bcm.edu	37	17	80274179	80274179	+	Silent	SNP	A	A	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	48.0	13.0	85.0	1.0	0.270833	0.0117647	.	.	none	CD7,rectum,carcinoma,0,1	CD7	25	1	NM_006137	exon3	c.T504C	p.S168S	GAGGGCAGAGGCT	.	scavenged	Atlas-SNP
HLA-DMB	3109	hgsc.bcm.edu	37	6	32905038	32905038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	166.0	11.0	187.0	0.0	0.0662651	0	.	.	none	.	HLA-DMB	38	.	NM_002118	exon3	c.C533T	p.S178F	AAATGGGAGAGGG	.	PASS	Atlas-SNP
SERPINB13	5275	hgsc.bcm.edu	37	18	61255917	61255917	+	Missense_Mutation	SNP	G	G	A	rs191405968	bycluster;by1000genomes	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	88.0	6.0	105.0	0.0	0.0681818	0	G|1.000;A|0.000	0.000	strong	.	SERPINB13	51	.	NM_012397	exon2	c.G16A	p.A6T	CTTGGCGCCGTCA	.	PASS	Atlas-SNP
TIGD2	166815	hgsc.bcm.edu	37	4	90034738	90034738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	97.0	7.0	145.0	0.0	0.0721649	0	.	.	none	.	TIGD2	36	.	NM_145715	exon1	c.A613G	p.S205G	AGGTCAAGCAGAG	.	PASS	Atlas-SNP
MKL1	57591	hgsc.bcm.edu	37	22	40816901	40816901	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	67.0	4.0	82.0	0.0	0.0597015	0	.	.	none	.	MKL1	69	.	NM_020831	exon10	c.G831C	p.Q277H	CTGCTGCTGGTTG	.	PASS	Atlas-SNP
DNTTIP2	30836	hgsc.bcm.edu	37	1	94341909	94341909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	90.0	7.0	125.0	0.0	0.0777778	0	.	.	none	DNTTIP2,lymph_node,lymphoid_neoplasm,0,1	DNTTIP2	59	1	NM_014597	exon2	c.A1582G	p.S528G	CTTCACTTTTTTC	.	PASS	Atlas-SNP
KDR	3791	hgsc.bcm.edu	37	4	55968617	55968617	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	111.0	6.0	173.0	0.0	0.0540541	0	.	.	none	.	KDR	307	.	NM_002253	exon14	c.A2046C	p.E682D	GATGCTTTCCCCA	.	PASS	Atlas-SNP
PTPRG	5793	hgsc.bcm.edu	37	3	62189308	62189308	+	Silent	SNP	C	C	T	rs150936656		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	125.0	16.0	179.0	0.0	0.128	0	C|1.000;T|0.000	0.000	weak	.	PTPRG	153	.	NM_002841	exon12	c.C1839T	p.H613H	GACCCACGCTGCC	.	PASS	Atlas-SNP
ADSSL1	122622	hgsc.bcm.edu	37	14	105204722	105204722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	50.0	3.0	67.0	0.0	0.06	0	.	.	none	ADSSL1,NS,carcinoma,-1,1	ADSSL1	37	1	NM_199165	exon3	c.T434C	p.V145A	ACGGGGTGGTCAT	.	scavenged	Atlas-SNP
CAPN12	147968	hgsc.bcm.edu	37	19	39227194	39227194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	313.0	25.0	337.0	0.0	0.0798722	0	.	.	none	.	CAPN12	43	.	NM_144691	exon11	c.G1372C	p.E458Q	TCACCTCCTCTGG	.	PASS	Atlas-SNP
CTSE	1510	hgsc.bcm.edu	37	1	206329027	206329027	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	113.0	9.0	125.0	0.0	0.079646	0	.	.	none	.	CTSE	72	.	NM_148964	exon7	c.C851T	p.P284L	AGTCCCCTATACC	.	PASS	Atlas-SNP
DGKI	9162	hgsc.bcm.edu	37	7	137206621	137206621	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	86.0	4.0	81.0	0.0	0.0465116	0	.	.	none	.	DGKI	335	.	NM_004717	exon21	c.C2239T	p.R747X	CTTCTCGGAGTTT	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21239442	21239442	+	Silent	SNP	C	C	T	rs200281277	by1000genomes	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	136.0	12.0	202.0	0.0	0.0882353	0	C|1.000;T|0.000	0.000	strong	.	APOB	761	.	NM_000384	exon21	c.G3201A	p.P1067P	AAAATCCGGAATT	.	PASS	Atlas-SNP
CDC27	996	hgsc.bcm.edu	37	17	45216113	45216113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	48.0	2.0	50.0	0.0	0.0416667	0	.	.	none	CDC27_ENST00000531206,caecum,carcinoma,+1,6	CDC27	337	6	NM_001114091	exon13	c.T1714C	p.S572P	CTGGCGAATTTTT	.	scavenged	Atlas-SNP
ADRA2B	151	hgsc.bcm.edu	37	2	96781704	96781704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	117.0	9.0	142.0	0.0	0.0769231	0	.	.	none	.	ADRA2B	115	.	NM_000682	exon1	c.C185T	p.A62V	AGCGTGGCCACCA	.	PASS	Atlas-SNP
CRIPAK	285464	hgsc.bcm.edu	37	4	1389063	1389063	+	Missense_Mutation	SNP	G	G	C	rs148588369	bycluster;byfrequency	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	43.0	4.0	48.0	1.0	0.0930233	0.0208333	G|0.982;C|0.018	0.018	strong	CRIPAK,NS,carcinoma,0,1	CRIPAK	185	1	NM_175918	exon1	c.G764C	p.R255P	CGTGCCGATGTGG	.	scavenged	Atlas-SNP
PCDHA12	56137	hgsc.bcm.edu	37	5	140257190	140257190	+	Silent	SNP	G	G	C	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	95.0	15.0	122.0	0.0	0.157895	0	.	.	none	.	PCDHA12	196	.	NM_018903	exon1	c.G2133C	p.L711L	CCTGCTGGTGCTC	.	PASS	Atlas-SNP
RAB36	9609	hgsc.bcm.edu	37	22	23495232	23495232	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	52.0	9.0	63.0	0.0	0.173077	0	.	.	none	.	RAB36	26	.	NM_004914	exon5	c.T438G	p.N146K	CAAGAATGTTTTT	.	PASS	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	37	9	35724043	35724043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	72.0	8.0	115.0	0.0	0.111111	0	.	.	none	.	TLN1	185	.	NM_006289	exon7	c.G688A	p.V230I	AGGAGACAGGGTG	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	37	17	56833457	56833457	+	Silent	SNP	G	G	C	rs74256772		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	195.0	11.0	226.0	0.0	0.0564103	0	.	.	weak	PPM1E,colon,carcinoma,0,1	PPM1E	97	1	NM_014906	exon1	c.G99C	p.P33P	GGAGCCGGAACCC	.	PASS	Atlas-SNP
HIST1H2AC	8334	hgsc.bcm.edu	37	6	26124712	26124712	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	183.0	12.0	195.0	0.0	0.0655738	0	.	.	none	.	HIST1H2AC	29	.	NM_003512	exon1	c.G252A	p.L84L	CCACTTGCAGCTG	.	PASS	Atlas-SNP
LTA	4049	hgsc.bcm.edu	37	6	31541106	31541106	+	Missense_Mutation	SNP	G	G	A	rs148093456		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	68.0	4.0	61.0	0.0	0.0588235	0	G|1.000;A|0.000	0.000	weak	.	LTA	18	.	NM_001159740	exon4	c.G254A	p.R85H	CGGACCGTGCCTT	.	PASS	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	37	9	118989774	118989774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	41.0	7.0	44.0	0.0	0.170732	0	.	.	none	PAPPA,NS,carcinoma,-2,1	PAPPA	243	1	NM_002581	exon6	c.G2176A	p.A726T	TCCAACGCTTCCT	.	PASS	Atlas-SNP
PCDHGA6	56109	hgsc.bcm.edu	37	5	140755640	140755640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	150.0	11.0	169.0	0.0	0.0733333	0	.	.	none	.	PCDHGA6	219	.	NM_018919	exon1	c.G1990A	p.V664M	GTGGCCGTGGCCG	.	PASS	Atlas-SNP
CXXC1	30827	hgsc.bcm.edu	37	18	47812268	47812268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	65.0	5.0	67.0	0.0	0.0769231	0	.	.	none	.	CXXC1	50	.	NM_001101654	exon5	c.C490T	p.R164W	CTGACCGTTTGAT	.	PASS	Atlas-SNP
CXCR4	7852	hgsc.bcm.edu	37	2	136875620	136875620	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	56.0	5.0	61.0	0.0	0.0892857	0	.	.	none	.	CXCR4	51	.	NM_003467	exon1	c.T11G	p.I4S	ACACTGATCCCCT	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113267635	113267635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	91.0	6.0	135.0	0.0	0.0659341	0	.	.	none	CSMD3_ENST00000343508,caecum,carcinoma,-1,4	CSMD3	2325	4	NM_198123	exon62	c.G9884T	p.G3295V	GGTATACCAGGGT	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	37	17	56833497	56833497	+	Missense_Mutation	SNP	C	C	T	rs61052860		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	202.0	20.0	232.0	0.0	0.0990099	0	C|0.900;T|0.100	0.100	weak	PPM1E,colon,carcinoma,0,1	PPM1E	97	1	NM_014906	exon1	c.C139T	p.P47S	TCCGAGCCCGAGC	.	PASS	Atlas-SNP
COX3	5742	hgsc.bcm.edu	37	MT	9368	9368	+	Silent	SNP	A	A	G	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	5.0	5.0	0.0	0.0	1	.	.	.	none	.	.	.	.	ENST00000362079	exon1	c.A162G	p.M54M	AACCATATACCAA	.	PASS	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	37	12	104031890	104031890	+	Missense_Mutation	SNP	G	G	A	rs374968745		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	93.0	7.0	133.0	0.0	0.0752688	0	.	.	weak	STAB2,rectum,carcinoma,0,1	STAB2	370	1	NM_017564	exon8	c.G806A	p.R269H	GCTACCGTGGGGA	.	PASS	Atlas-SNP
KCNC2	3747	hgsc.bcm.edu	37	12	75601404	75601404	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	158.0	12.0	151.0	0.0	0.0759494	0	.	.	none	KCNC2_ENST00000549446,colon,carcinoma,0,2	KCNC2	239	2	NM_139137	exon2	c.C360T	p.T120T	CTTGCCGGTGCGG	.	PASS	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	37	17	56833454	56833454	+	Silent	SNP	G	G	A	rs77856248		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	200.0	9.0	235.0	1.0	0.045	0.00425532	.	.	weak	PPM1E,colon,carcinoma,0,1	PPM1E	97	1	NM_014906	exon1	c.G96A	p.E32E	GCCGGAGCCGGAA	.	scavenged	Atlas-SNP
PPM1E	22843	hgsc.bcm.edu	37	17	56833490	56833490	+	Silent	SNP	G	G	A	rs59676153		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	203.0	31.0	231.0	1.0	0.152709	0.004329	.	.	weak	PPM1E,colon,carcinoma,0,1	PPM1E	97	1	NM_014906	exon1	c.G132A	p.E44E	ACCCGAGTCCGAG	.	scavenged	Atlas-SNP
NRXN1	9378	hgsc.bcm.edu	37	2	50765586	50765586	+	Missense_Mutation	SNP	C	C	T	rs202137841	alternate_allele	TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	110.0	12.0	171.0	0.0	0.109091	0	.	.	alt	.	NRXN1	1118	.	NM_001135659	exon11	c.G2068A	p.D690N	GGCCATCGATGAA	.	PASS	Atlas-SNP
TCTN1	79600	hgsc.bcm.edu	37	12	111066588	111066588	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	57.0	5.0	76.0	0.0	0.0877193	0	.	.	none	.	TCTN1	37	.	NM_024549	exon4	c.C489T	p.S163S	ATTATCCTTTATT	.	PASS	Atlas-SNP
TMEM30A	55754	hgsc.bcm.edu	37	6	75969072	75969072	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	271.0	15.0	392.0	0.0	0.0553506	0	.	.	none	TMEM30A,caecum,carcinoma,0,2	TMEM30A	40	2	NM_018247	exon5	c.C676T	p.R226X	TAAATCGTTCTTC	.	PASS	Atlas-SNP
ZNF699	374879	hgsc.bcm.edu	37	19	9407194	9407194	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	69.0	6.0	88.0	0.0	0.0869565	0	.	.	none	.	ZNF699	67	.	NM_198535	exon5	c.G886T	p.E296X	TGTGTTCTGTGAG	.	PASS	Atlas-SNP
SLMO1	10650	hgsc.bcm.edu	37	18	12420448	12420448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	68.0	6.0	63.0	0.0	0.0882353	0	.	.	none	.	SLMO1	11	.	NM_001142405	exon2	c.C157T	p.R53C	AGCTTGCGCCTGC	.	PASS	Atlas-SNP
PCDHA4	56144	hgsc.bcm.edu	37	5	140186810	140186810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D5-01A-11D-A31X-10	TCGA-GR-A4D5-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	90533f5d-0761-4b4a-a1ee-91e10e9ba2c4	433ab22f-7d7f-4e86-86f3-0ab50681046c	80.0	6.0	111.0	0.0	0.075	0	.	.	none	.	PCDHA4	419	.	NM_031500	exon1	c.G38A	p.R13H	CCCGGCGTCTGCT	.	PASS	Atlas-SNP