Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
TPRX1	284355	hgsc.bcm.edu	37	19	48305613	48305624	+	In_Frame_Del	DEL	TTGGGCCTGAGA	TTGGGCCTGAGA	-	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	TTGGGCCTGAGA	TTGGGCCTGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	32.0	11.0	32.0	0.0	0.34375	0	.	.	none	TPRX1,NS,carcinoma,0,1	TPRX1	46	1	NM_198479	exon2	c.645_656del	p.215_219del	.	.	PASS	Atlas-Indel
HIST1H2BG	8339	hgsc.bcm.edu	37	6	26216764	26216764	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	88.0	19.0	105.0	0.0	0.215909	0	.	.	none	.	HIST1H2BG	25	.	NM_003518	exon1	c.G108A	p.E36E	GTAGCTCTCCTTA	.	PASS	Atlas-SNP
HIST1H1D	3007	hgsc.bcm.edu	37	6	26234674	26234674	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	74.0	16.0	84.0	0.0	0.216216	0	.	.	none	.	HIST1H1D	40	.	NM_005320	exon1	c.C488G	p.A163G	GCGGTTGCTGGCT	.	PASS	Atlas-SNP
PLXDC2	84898	hgsc.bcm.edu	37	10	20436808	20436808	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	102.0	14.0	105.0	0.0	0.137255	0	.	.	none	.	PLXDC2	108	.	NM_032812	exon6	c.C760T	p.R254X	GATGGACGAATCA	.	PASS	Atlas-SNP
CNN2	1265	hgsc.bcm.edu	37	19	1037764	1037764	+	Silent	SNP	C	C	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	108.0	26.0	137.0	0.0	0.240741	0	.	.	none	.	CNN2	26	.	NM_004368	exon7	c.C795G	p.G265G	CCTGGGCCGGCAG	.	PASS	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	37	3	78795978	78795978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	108.0	14.0	97.0	0.0	0.12963	0	.	.	none	.	ROBO1	833	.	NM_002941	exon5	c.G572T	p.C191F	GGTTGGCATTCCA	.	PASS	Atlas-SNP
PPP2R5A	5525	hgsc.bcm.edu	37	1	212532087	212532087	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	318.0	47.0	269.0	0.0	0.147799	0	.	.	none	.	PPP2R5A	48	.	NM_006243	exon12	c.T1286G	p.L429R	GCAAGCTTTTCGA	.	PASS	Atlas-SNP
CNOT1	23019	hgsc.bcm.edu	37	16	58577327	58577327	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	188.0	8.0	215.0	2.0	0.0425532	0.00930233	.	.	none	CNOT1_ENST00000441024,caecum,carcinoma,0,1	CNOT1	359	1	NM_206999	exon31	c.T4618G	p.F1540V	AAAAAAAACACAC	.	scavenged	Atlas-SNP
NHSL1	57224	hgsc.bcm.edu	37	6	138751531	138751531	+	Silent	SNP	T	T	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	89.0	27.0	72.0	0.0	0.303371	0	.	.	none	.	NHSL1	99	.	NM_020464	exon5	c.A3963G	p.A1321A	CTCACCTGCTCCG	.	PASS	Atlas-SNP
INSR	3643	hgsc.bcm.edu	37	19	7174667	7174667	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	75.0	13.0	67.0	0.0	0.173333	0	.	.	none	.	INSR	265	.	NM_000208	exon4	c.G1050A	p.S350S	CGTCACCGAGTCG	.	PASS	Atlas-SNP
TMEM44	93109	hgsc.bcm.edu	37	3	194338424	194338424	+	Missense_Mutation	SNP	G	G	C	rs58679389	bycluster;byfrequency;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	4.0	4.0	0.0	0.0	1	.	C|0.130;G|0.870	0.130	strong	.	TMEM44	42	.	NM_001166305	exon6	c.C694G	p.R232G	GAGAACGTGAGGG	.	PASS	Atlas-SNP
CASR	846	hgsc.bcm.edu	37	3	122002948	122002948	+	Missense_Mutation	SNP	G	G	A	rs201670662	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	29.0	7.0	53.0	0.0	0.241379	0	.	.	weak	.	CASR	190	.	NM_001178065	exon7	c.G2177A	p.R726H	TCCACCGCAAGTG	.	PASS	Atlas-SNP
TRPM2	7226	hgsc.bcm.edu	37	21	45825049	45825049	+	Missense_Mutation	SNP	G	G	A	rs144022462	alternate_allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	55.0	12.0	62.0	0.0	0.218182	0	G|1.000;T|0.000	.	alt	.	TRPM2	196	.	NM_003307	exon17	c.G2563A	p.G855R	GAGTGCGGGCTGA	.	PASS	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	37	17	65955758	65955758	+	Silent	SNP	T	T	C	rs202116659	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	108.0	18.0	92.0	2.0	0.166667	0.0217391	.	.	weak	BPTF_ENST00000335221,rectum,carcinoma,0,2	BPTF	415	2	NM_182641	exon24	c.T8028C	p.A2676A	ACCAGCTCCTCCA	.	scavenged	Atlas-SNP
LRFN5	145581	hgsc.bcm.edu	37	14	42356300	42356300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	55.0	15.0	67.0	1.0	0.272727	0.0149254	.	.	none	LRFN5,NS,carcinoma,0,1	LRFN5	269	1	NM_152447	exon3	c.A472C	p.N158H	TATAATAATCTAG	.	scavenged	Atlas-SNP
FN1	2335	hgsc.bcm.edu	37	2	216257886	216257886	+	Silent	SNP	G	G	T	rs61732520	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	100.0	4.0	88.0	0.0	0.04	0	G|0.994;A|0.006	.	alt	.	FN1	521	.	NM_212482	exon25	c.C3837A	p.T1279T	TGAATCGGTTATA	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179605902	179605902	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	29.0	11.0	25.0	0.0	0.37931	0	.	.	none	.	TTN	18412	.	NM_001267550	exon48	c.T12058A	p.S4020T	AGGTGGACTCACC	.	PASS	Atlas-SNP
OR2L3	391192	hgsc.bcm.edu	37	1	248224739	248224739	+	Silent	SNP	A	A	G	rs77641372		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	60.0	4.0	115.0	1.0	0.0666667	0.00869565	.	.	weak	OR2L3,NS,carcinoma,0,2	OR2L3	97	2	NM_001004687	exon1	c.A756G	p.A252A	CTATGCACCTTTT	.	scavenged	Atlas-SNP
LRCOL1	100507055	hgsc.bcm.edu	37	12	133181399	133181399	+	Missense_Mutation	SNP	T	T	C	rs11146963	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	4.0	4.0	0.0	0.0	1	.	T|0.274;C|0.726	0.726	strong	.	.	.	.	NM_001195520	exon3	c.A124G	p.R42G	GTCTCCTGCATGG	.	PASS	Atlas-SNP
PLD1	5337	hgsc.bcm.edu	37	3	171455820	171455820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	172.0	27.0	130.0	1.0	0.156977	0.00769231	.	.	none	PLD1,NS,carcinoma,0,2	PLD1	134	2	NM_002662	exon2	c.C22T	p.R8W	TTACCCGTGGCTC	.	scavenged	Atlas-SNP
MAGEF1	64110	hgsc.bcm.edu	37	3	184429559	184429559	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	111.0	17.0	103.0	0.0	0.153153	0	.	.	none	.	MAGEF1	27	.	NM_022149	exon1	c.G51A	p.G17G	CTTCTCCCCCTCG	.	PASS	Atlas-SNP
CRYGN	155051	hgsc.bcm.edu	37	7	151135158	151135158	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	58.0	11.0	45.0	0.0	0.189655	0	.	.	none	.	CRYGN	15	.	NM_144727	exon2	c.A194C	p.E65A	CCGTGCTCCAAGA	.	PASS	Atlas-SNP
ND6	0	hgsc.bcm.edu	37	MT	14364	14364	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	7.0	7.0	0.0	0.0	1	.	.	.	none	.	.	.	.	ENST00000361681	exon1	c.C310T	p.L104L	CCCACAGCACCAA	.	PASS	Atlas-SNP
KLHL6	89857	hgsc.bcm.edu	37	3	183212058	183212058	+	Missense_Mutation	SNP	T	T	C	rs372112529	alternate_allele	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	78.0	19.0	69.0	0.0	0.24359	0	.	.	alt	.	KLHL6	100	.	NM_130446	exon5	c.A1159G	p.T387A	GCTGTGTTTCTTT	.	PASS	Atlas-SNP
COL24A1	255631	hgsc.bcm.edu	37	1	86249233	86249233	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	156.0	35.0	123.0	0.0	0.224359	0	.	.	none	COL24A1,colon,carcinoma,0,1	COL24A1	202	1	NM_152890	exon51	c.A4230C	p.E1410D	ATCCCCTTCAGGA	.	PASS	Atlas-SNP
FCRL3	115352	hgsc.bcm.edu	37	1	157670256	157670256	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	160.0	39.0	127.0	0.0	0.24375	0	.	.	none	.	FCRL3	163	.	NM_052939	exon2	c.G24A	p.L8L	CAGGATCAGCAGC	.	PASS	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	37	9	123937296	123937296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	81.0	21.0	77.0	0.0	0.259259	0	.	.	none	.	CNTRL	161	.	NM_007018	exon41	c.G6748A	p.A2250T	TTTCAGGCCCAAC	.	PASS	Atlas-SNP
ATXN1	6310	hgsc.bcm.edu	37	6	16327891	16327891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	40.0	9.0	27.0	0.0	0.225	0	.	.	none	ATXN1,NS,carcinoma,0,1	ATXN1	117	1	NM_001128164	exon7	c.G651T	p.Q217H	CTGCTGCTGCTGC	.	PASS	Atlas-SNP
JUNB	3726	hgsc.bcm.edu	37	19	12902785	12902785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	69.0	20.0	88.0	0.0	0.289855	0	.	.	none	.	JUNB	14	.	NM_002229	exon1	c.G200A	p.S67N	GCGGCAGCTACTT	.	PASS	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	71.0	5.0	60.0	0.0	0.0704225	0	.	.	weak	PRKCSH,caecum,carcinoma,0,1	PRKCSH	55	1	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	PASS	Atlas-SNP
VWF	7450	hgsc.bcm.edu	37	12	6085324	6085324	+	Missense_Mutation	SNP	G	G	A	rs61751286	bycluster;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	68.0	16.0	99.0	1.0	0.235294	0.010101	G|1.000;A|0.000	0.000	strong	VWF,NS,lymphoid_neoplasm,+1,1	VWF	338	1	NM_000552	exon43	c.C7390T	p.R2464C	CCACGCGGAGGCC	.	scavenged	Atlas-SNP
EP300	2033	hgsc.bcm.edu	37	22	41572795	41572795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	93.0	25.0	69.0	0.0	0.268817	0	.	.	none	.	EP300	367	.	NM_001429	exon31	c.A5080G	p.T1694A	TGTATCACCTGCT	.	PASS	Atlas-SNP
TMEM44	93109	hgsc.bcm.edu	37	3	194338423	194338423	+	Missense_Mutation	SNP	C	C	T	rs12695036	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	4.0	4.0	0.0	0.0	1	.	C|0.567;T|0.433	0.433	strong	.	TMEM44	42	.	NM_001166305	exon6	c.G695A	p.R232H	GGAGAACGTGAGG	.	PASS	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	37	1	176671860	176671860	+	Silent	SNP	G	G	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	30.0	4.0	33.0	0.0	0.133333	0	.	.	none	.	PAPPA2	665	.	NM_020318	exon9	c.G3354C	p.G1118G	AGATGGGAAGGTG	.	PASS	Atlas-SNP
NFKBIE	4794	hgsc.bcm.edu	37	6	44227895	44227895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	45.0	17.0	42.0	0.0	0.377778	0	.	.	none	.	NFKBIE	31	.	NM_004556	exon5	c.T1322C	p.L441P	AGGTGCAGGGGTG	.	PASS	Atlas-SNP
PTPRK	5796	hgsc.bcm.edu	37	6	128505735	128505735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	127.0	10.0	137.0	0.0	0.0787402	0	.	.	none	PTPRK_ENST00000368213,mucosal,malignant_melanoma,-1,2	PTPRK	330	2	NM_001135648	exon7	c.G1004A	p.G335E	CAGGATCCTGATG	.	PASS	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	37	16	89347228	89347228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	82.0	24.0	62.0	0.0	0.292683	0	.	.	none	.	ANKRD11	195	.	NM_001256183	exon9	c.C5722T	p.P1908S	CCGGGGGAAGGGC	.	PASS	Atlas-SNP
HIST1H2BG	8339	hgsc.bcm.edu	37	6	26216827	26216827	+	Silent	SNP	G	G	A	rs143774290		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	74.0	16.0	96.0	0.0	0.216216	0	G|1.000;A|0.000	0.000	weak	.	HIST1H2BG	25	.	NM_003518	exon1	c.C45T	p.S15S	CTTCTTGGAACCC	.	PASS	Atlas-SNP
BIRC7	79444	hgsc.bcm.edu	37	20	61870941	61870941	+	Missense_Mutation	SNP	G	G	A	rs142521563		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	32.0	11.0	30.0	0.0	0.34375	0	G|1.000;A|0.000	0.000	weak	BIRC7,colon,carcinoma,0,1	BIRC7	25	1	NM_139317	exon6	c.G881A	p.R294H	GCGTGCGCACCTT	.	PASS	Atlas-SNP
ZKSCAN1	7586	hgsc.bcm.edu	37	7	99631550	99631550	+	Silent	SNP	G	G	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	91.0	4.0	70.0	0.0	0.043956	0	.	.	none	.	ZKSCAN1	59	.	NM_003439	exon6	c.G1422T	p.S474S	GAGCTCGGACCTC	.	PASS	Atlas-SNP
KDM2B	84678	hgsc.bcm.edu	37	12	121891060	121891060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	44.0	11.0	66.0	0.0	0.25	0	.	.	none	.	KDM2B	218	.	NM_032590	exon13	c.C1822T	p.R608W	GGCGCCGCCGAGC	.	PASS	Atlas-SNP
RARB	5915	hgsc.bcm.edu	37	3	25611289	25611289	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	82.0	20.0	102.0	1.0	0.243902	0.00980392	.	.	none	RARB_ENST00000404969,rectum,carcinoma,+1,2	RARB	123	2	NM_000965	exon4	c.G489A	p.S163S	GACTTCGAAGCAA	.	scavenged	Atlas-SNP
OR4D6	219983	hgsc.bcm.edu	37	11	59225155	59225155	+	Missense_Mutation	SNP	C	C	T	rs376910045		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	55.0	9.0	64.0	0.0	0.163636	0	.	.	weak	OR4D6,colon,carcinoma,-1,1	OR4D6	65	1	NM_001004708	exon1	c.C722T	p.T241M	CGTGCACGTCCCA	.	PASS	Atlas-SNP
C16orf93	90835	hgsc.bcm.edu	37	16	30770512	30770512	+	Silent	SNP	T	T	C	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	51.0	12.0	38.0	0.0	0.235294	0	.	.	none	.	C16orf93	33	.	NM_001014979	exon7	c.A714G	p.P238P	ACTCTCTGGCCAC	.	PASS	Atlas-SNP
MYO18B	84700	hgsc.bcm.edu	37	22	26242205	26242205	+	Silent	SNP	C	C	T	rs375428629		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	48.0	11.0	48.0	0.0	0.229167	0	.	.	weak	.	MYO18B	322	.	NM_032608	exon19	c.C3507T	p.A1169A	CCTTGCCGCGGTG	.	PASS	Atlas-SNP
PODN	127435	hgsc.bcm.edu	37	1	53544260	53544260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	84.0	24.0	81.0	0.0	0.285714	0	.	.	none	.	PODN	86	.	NM_153703	exon8	c.C1222T	p.R408W	CTCAAGCGGTTGC	.	PASS	Atlas-SNP
SYNRG	11276	hgsc.bcm.edu	37	17	35913676	35913676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	73.0	7.0	88.0	0.0	0.0958904	0	.	.	none	.	SYNRG	101	.	NM_007247	exon14	c.G2149A	p.E717K	CTTCCTCTTTAAG	.	PASS	Atlas-SNP
CERS6	253782	hgsc.bcm.edu	37	2	169417787	169417787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D6-01A-11D-A31X-10	TCGA-GR-A4D6-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a58bec0-67a8-4529-80d8-1042dfd8164a	5efebdb0-cfc1-42ae-be1d-e124289877a5	73.0	20.0	96.0	0.0	0.273973	0	.	.	none	LASS6,colon,carcinoma,+1,1	.	.	1	NM_001256126	exon3	c.G362A	p.R121H	AAAGACGCAATCA	.	PASS	Atlas-SNP