Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
KTN1	3895	hgsc.bcm.edu	37	14	56079010	56079010	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	145.0	19.0	188.0	0.0	0.131034	0	.	.	none	.	KTN1	147	.	NM_004986	exon2	c.C244T	p.R82X	GTACCTCGAGACT	.	PASS	Atlas-SNP
PKN2	5586	hgsc.bcm.edu	37	1	89271287	89271287	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	122.0	8.0	148.0	0.0	0.0655738	0	.	.	none	.	PKN2	109	.	NM_006256	exon11	c.C1609G	p.Q537E	AGCCCTCAAGCTC	.	PASS	Atlas-SNP
CDH3	1001	hgsc.bcm.edu	37	16	68712537	68712537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	35.0	6.0	56.0	0.0	0.171429	0	.	.	none	.	CDH3	68	.	NM_001793	exon5	c.G524A	p.R175Q	TGGACCGGGAGGA	.	PASS	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	37	5	71495880	71495880	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	50.0	5.0	61.0	0.0	0.1	0	.	.	none	.	MAP1B	243	.	NM_005909	exon5	c.A6698C	p.K2233T	TGGGCAAAGCTCT	.	PASS	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	37	9	73225579	73225579	+	Silent	SNP	G	G	T	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	99.0	9.0	112.0	0.0	0.0909091	0	.	.	none	TRPM3_ENST00000423814,NS,carcinoma,-2,3	TRPM3	700	3	NM_001007471	exon18	c.C2577A	p.G859G	TTTTCTGCCGAGG	.	PASS	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	37	11	33581343	33581343	+	Missense_Mutation	SNP	G	G	A	rs369439478		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	53.0	9.0	73.0	0.0	0.169811	0	.	.	weak	.	.	.	.	NM_012194	exon6	c.G3013A	p.V1005M	TACGTCGTGGGCA	.	PASS	Atlas-SNP
MYH7B	57644	hgsc.bcm.edu	37	20	33588659	33588659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	42.0	6.0	40.0	0.0	0.142857	0	.	.	none	MYH7B,NS,carcinoma,+1,1	MYH7B	145	1	NM_020884	exon40	c.G5393A	p.R1798Q	AGAGGCGGGAGGC	.	PASS	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	37	16	9916205	9916205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	127.0	7.0	177.0	0.0	0.0551181	0	.	.	none	.	GRIN2A	366	.	NM_000833	exon11	c.G2084A	p.R695Q	TTATTCCGAATGT	.	PASS	Atlas-SNP
CAMTA1	23261	hgsc.bcm.edu	37	1	7796527	7796527	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	92.0	9.0	96.0	0.0	0.0978261	0	.	.	none	.	CAMTA1	226	.	NM_015215	exon13	c.C3190G	p.R1064G	ACTTTCCGCGGAA	.	PASS	Atlas-SNP
RAB40A	142684	hgsc.bcm.edu	37	X	102755451	102755451	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	350.0	25.0	461.0	0.0	0.0714286	0	.	.	none	.	RAB40A	30	.	NM_080879	exon3	c.C234T	p.T78T	GAATATGGTACAA	.	PASS	Atlas-SNP
UBE2R2	54926	hgsc.bcm.edu	37	9	33900200	33900200	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	153.0	11.0	141.0	0.0	0.0718954	0	.	.	none	UBE2R2,NS,carcinoma,+1,1	UBE2R2	19	1	NM_017811	exon3	c.A293T	p.H98L	TTCTTCATCCGCC	.	PASS	Atlas-SNP
GAL3ST4	79690	hgsc.bcm.edu	37	7	99757593	99757593	+	Silent	SNP	G	G	C	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	63.0	6.0	76.0	0.0	0.0952381	0	.	.	none	.	GAL3ST4	59	.	NM_024637	exon4	c.C1419G	p.T473T	TGAGACGGTAGGG	.	PASS	Atlas-SNP
DLGAP3	58512	hgsc.bcm.edu	37	1	35370945	35370945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	63.0	8.0	88.0	0.0	0.126984	0	.	.	none	.	DLGAP3	107	.	NM_001080418	exon1	c.C40T	p.P14S	GGGCTGGGCGGGG	.	PASS	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	37	17	8455392	8455392	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	161.0	15.0	168.0	0.0	0.0931677	0	.	.	none	.	MYH10	148	.	NM_001256012	exon9	c.G891A	p.L297L	AGATAACAACTGG	.	PASS	Atlas-SNP
PMFBP1	83449	hgsc.bcm.edu	37	16	72198813	72198813	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	33.0	6.0	45.0	0.0	0.181818	0	.	.	none	PMFBP1,NS,carcinoma,-1,2	PMFBP1	101	2	NM_031293	exon3	c.G15A	p.A5A	CTCCCCCGCCTAG	.	PASS	Atlas-SNP
NEK1	4750	hgsc.bcm.edu	37	4	170509869	170509869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	176.0	23.0	275.0	0.0	0.130682	0	.	.	none	.	NEK1	203	.	NM_001199399	exon8	c.G482A	p.R161Q	CAAGTTCGAGCCA	.	PASS	Atlas-SNP
TRIM22	10346	hgsc.bcm.edu	37	11	5730437	5730437	+	Silent	SNP	G	G	A	rs140700337	bycluster;by1000genomes	TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	116.0	11.0	132.0	0.0	0.0948276	0	G|0.993;A|0.007	0.007	strong	.	TRIM22	66	.	NM_006074	exon8	c.G1056A	p.S352S	CTCTTCGGGGAAA	.	PASS	Atlas-SNP
CNGB1	1258	hgsc.bcm.edu	37	16	57918303	57918303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	64.0	16.0	72.0	0.0	0.25	0	.	.	none	.	CNGB1	105	.	NM_001297	exon33	c.C3521T	p.T1174M	GGGTGCGTGTGCT	.	PASS	Atlas-SNP
TNKS1BP1	85456	hgsc.bcm.edu	37	11	57081004	57081004	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	50.0	13.0	35.0	0.0	0.26	0	.	.	none	.	TNKS1BP1	148	.	NM_033396	exon5	c.C1158T	p.T386T	GGGTGAGGTGGCA	.	PASS	Atlas-SNP
MESP2	145873	hgsc.bcm.edu	37	15	90320149	90320149	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	22.0	8.0	23.0	0.0	0.363636	0	.	.	none	.	MESP2	20	.	NM_001039958	exon1	c.G561A	p.G187G	GCAGGGGCAGGGG	.	PASS	Atlas-SNP
HHLA3	11147	hgsc.bcm.edu	37	1	70832174	70832174	+	Missense_Mutation	SNP	C	C	G	rs143161214	bycluster;by1000genomes;alternate_allele	TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	140.0	8.0	152.0	0.0	0.0571429	0	C|1.000;A|0.000	.	alt	.	HHLA3	11	.	NM_001036645	exon2	c.C305G	p.S102C	AGCATTCTTGGAT	.	PASS	Atlas-SNP
MED12	9968	hgsc.bcm.edu	37	X	70352367	70352367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	106.0	11.0	94.0	0.0	0.103774	0	.	.	none	.	MED12	984	.	NM_005120	exon31	c.G4394A	p.R1465H	AAGAACGTGATCG	.	PASS	Atlas-SNP
RPL37	6167	hgsc.bcm.edu	37	5	40832665	40832665	+	Missense_Mutation	SNP	G	G	A	rs368304251		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	145.0	8.0	193.0	0.0	0.0551724	0	.	.	weak	RPL37,NS,carcinoma,0,1	RPL37	7	1	NM_000997	exon4	c.C235T	p.R79C	CTTCACGGAATCC	.	PASS	Atlas-SNP
TRPM3	80036	hgsc.bcm.edu	37	9	73225580	73225580	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	100.0	9.0	114.0	0.0	0.09	0	.	.	none	TRPM3_ENST00000423814,NS,carcinoma,-1,3	TRPM3	700	3	NM_001007471	exon18	c.G2576C	p.G859A	TTTCTGCCGAGGG	.	PASS	Atlas-SNP
OTOGL	283310	hgsc.bcm.edu	37	12	80714313	80714313	+	Missense_Mutation	SNP	G	G	A	rs369089877		TCGA-GS-A9U4-01A-11D-A38X-10	TCGA-GS-A9U4-10A-01D-A38X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b7512d6-8e65-47d9-98ca-1fe4bd7c455f	22fb535e-5b36-4add-ba3f-997cb70efcff	93.0	9.0	127.0	0.0	0.0967742	0	.	.	weak	OTOGL_ENST00000458043,NS,carcinoma,+1,1	OTOGL	235	1	NM_173591	exon33	c.G3887A	p.R1296Q	TTCATCGGAGAGC	.	PASS	Atlas-SNP