Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
GGN	199720	hgsc.bcm.edu	37	19	38876581	38876583	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	72.0	11.0	68.0	0.0	0.152778	0	.	.	none	.	GGN	50	.	NM_152657	exon3	c.1320_1322del	p.440_441del	.	.	PASS	Atlas-Indel
TFDP2	7029	hgsc.bcm.edu	37	3	141688919	141688921	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	165.0	31.0	164.0	0.0	0.188	.	.	.	none	.	TFDP2	44	.	NM_001178139	exon9	c.727_729del	p.243_243del	.	.	PASS	Pindel,Atlas-Indel
GPR52	9293	hgsc.bcm.edu	37	1	174418186	174418209	+	In_Frame_Del	DEL	AACTGTGTAATATACAGCCTCTCC	AACTGTGTAATATACAGCCTCTCC	-	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	AACTGTGTAATATACAGCCTCTCC	AACTGTGTAATATACAGCCTCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	143.0	17.0	115.0	0.0	0.118881	0	.	.	none	.	GPR52	40	.	NM_005684	exon1	c.936_959del	p.312_320del	.	.	PASS	Atlas-Indel
UNC5B	219699	hgsc.bcm.edu	37	10	73050831	73050831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	50.0	15.0	66.0	0.0	0.3	0	.	.	none	UNC5B,NS,neuroblastoma,+1,2	UNC5B	123	2	NM_170744	exon9	c.G1259T	p.G420V	CTGGTGGTTTCCA	.	PASS	Atlas-SNP
GABRB3	2562	hgsc.bcm.edu	37	15	26806091	26806091	+	Silent	SNP	G	G	A	rs369761963		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	279.0	60.0	253.0	0.0	0.215054	0	.	.	weak	GABRB3_ENST00000541819,colon,carcinoma,-1,4	GABRB3	338	4	NM_021912	exon8	c.C1068T	p.S356S	GCTTTCGCTCTTT	.	PASS	Atlas-SNP
PAX7	5081	hgsc.bcm.edu	37	1	18962816	18962816	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	90.0	21.0	77.0	0.0	0.233333	0	.	.	none	.	PAX7	127	.	NM_002584	exon4	c.C537T	p.D179D	GGACGACGGCGAA	.	PASS	Atlas-SNP
TCTN1	79600	hgsc.bcm.edu	37	12	111082831	111082831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	49.0	12.0	49.0	0.0	0.244898	0	.	.	none	.	TCTN1	37	.	NM_001082537	exon12	c.G1391T	p.G464V	TGTGGGGCCAGGG	.	PASS	Atlas-SNP
ZNF80	7634	hgsc.bcm.edu	37	3	113955390	113955390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	71.0	15.0	51.0	0.0	0.211268	0	.	.	none	ZNF80,colon,carcinoma,+1,1	ZNF80	75	1	NM_007136	exon1	c.C532T	p.R178W	TGTGCCGGGTTAA	.	PASS	Atlas-SNP
SLCO1B7	338821	hgsc.bcm.edu	37	12	21201645	21201645	+	Splice_Site	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	143.0	34.0	145.0	0.0	0.237762	0	.	.	none	.	SLCO1B7	85	.	NM_001009562	exon8	c.995-1G>A	.	TTTCTAGGAGTCC	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228557697	228557697	+	Silent	SNP	C	C	T	rs200703788	bycluster;alternate_allele	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	73.0	17.0	56.0	0.0	0.232877	0	C|0.996;G|0.004	.	alt	.	OBSCN	2142	.	NM_001271223	exon102	c.C22893T	p.N7631N	CCTGAACGTCCTG	.	PASS	Atlas-SNP
P2RY6	5031	hgsc.bcm.edu	37	11	73008491	73008491	+	Missense_Mutation	SNP	C	C	T	rs139336490	alternate_allele	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	31.0	13.0	32.0	0.0	0.419355	0	C|1.000;A|0.000	.	alt	.	P2RY6	45	.	NM_176796	exon4	c.C928T	p.R310W	TTCCGCCGGCGAC	.	PASS	Atlas-SNP
WDTC1	23038	hgsc.bcm.edu	37	1	27608772	27608772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	44.0	17.0	43.0	0.0	0.386364	0	.	.	none	.	WDTC1	69	.	NM_015023	exon4	c.G175A	p.G59R	GAGAAAGGAGAGT	.	PASS	Atlas-SNP
RHOB	388	hgsc.bcm.edu	37	2	20647760	20647760	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	56.0	16.0	50.0	0.0	0.285714	0	.	.	none	.	RHOB	18	.	NM_004040	exon1	c.G534A	p.A178A	CGCCGCGCTGCAG	.	PASS	Atlas-SNP
TYRP1	7306	hgsc.bcm.edu	37	9	12694262	12694262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	41.0	11.0	63.0	0.0	0.268293	0	.	.	none	.	TYRP1	60	.	NM_000550	exon2	c.T266A	p.V89D	GGGAGGTCTGGCC	.	PASS	Atlas-SNP
TBX3	6926	hgsc.bcm.edu	37	12	115112370	115112370	+	Missense_Mutation	SNP	G	G	A	rs371891930		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	46.0	9.0	35.0	0.0	0.195652	0	.	.	weak	TBX3,NS,carcinoma,+1,1	TBX3	106	1	NM_016569	exon7	c.C1370T	p.P457L	CGAACCGGGCTCC	.	PASS	Atlas-SNP
ND4	0	hgsc.bcm.edu	37	MT	11991	11991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	16.0	7.0	24.0	0.0	0.4375	0	.	.	none	.	.	.	.	ENST00000361381	exon1	c.T1232C	p.F411S	ACATATTTACCAC	.	PASS	Atlas-SNP
HIST2H2BE	8349	hgsc.bcm.edu	37	1	149858047	149858047	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	159.0	35.0	100.0	0.0	0.220126	0	.	.	none	.	HIST2H2BE	33	.	NM_003528	exon1	c.G144A	p.Q48Q	GTGGACCTGCTTC	.	PASS	Atlas-SNP
ADARB2	105	hgsc.bcm.edu	37	10	1230952	1230952	+	Missense_Mutation	SNP	G	G	A	rs138785387	bycluster	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	73.0	24.0	47.0	0.0	0.328767	0	G|1.000;A|0.000	0.000	weak	.	ADARB2	95	.	NM_018702	exon9	c.C1892T	p.P631L	TTCCCCGGCTGGC	.	PASS	Atlas-SNP
ZNF841	284371	hgsc.bcm.edu	37	19	52569959	52569959	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	96.0	27.0	107.0	0.0	0.28125	0	.	.	none	.	ZNF841	183	.	NM_001136499	exon7	c.G1176C	p.Q392H	AACTGTCTGATGA	.	PASS	Atlas-SNP
ZNF273	10793	hgsc.bcm.edu	37	7	64388883	64388883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	65.0	13.0	61.0	0.0	0.2	0	.	.	none	.	ZNF273	45	.	NM_021148	exon4	c.A1177C	p.K393Q	AGACATAAGATAG	.	PASS	Atlas-SNP
HIST1H2AG	8969	hgsc.bcm.edu	37	6	27101120	27101120	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	156.0	36.0	129.0	0.0	0.230769	0	.	.	none	.	HIST1H2AG	37	.	NM_021064	exon1	c.C270T	p.N90N	CCGCAACGACGAG	.	PASS	Atlas-SNP
APBA2	321	hgsc.bcm.edu	37	15	29346718	29346718	+	Missense_Mutation	SNP	C	C	T	rs149847107	bycluster;by1000genomes	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	67.0	19.0	42.0	0.0	0.283582	0	C|1.000;T|0.000	0.000	strong	APBA2,caecum,carcinoma,-1,1	APBA2	132	1	NM_005503	exon3	c.C631T	p.R211C	CCCTACCGCCTGA	.	PASS	Atlas-SNP
PCDHGA7	56108	hgsc.bcm.edu	37	5	140764414	140764414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	81.0	23.0	57.0	0.0	0.283951	0	.	.	none	PCDHGA7,NS,carcinoma,0,1	PCDHGA7	130	1	NM_032087	exon1	c.G1948A	p.G650S	GACCACGGTCAGC	.	PASS	Atlas-SNP
SEPT4	5414	hgsc.bcm.edu	37	17	56599357	56599357	+	Silent	SNP	G	G	A	rs144640338		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	135.0	36.0	126.0	0.0	0.266667	0	G|1.000;A|0.000	0.000	weak	.	SEPT4	48	.	NM_001256782	exon7	c.C813T	p.C271C	GTACAGGCAGCAG	.	PASS	Atlas-SNP
DDX25	29118	hgsc.bcm.edu	37	11	125774440	125774440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	71.0	38.0	37.0	0.0	0.535211	0	.	.	none	.	DDX25	65	.	NM_013264	exon1	c.G28A	p.A10T	GGCGACGCAGGGG	.	PASS	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	37	2	84921393	84921393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	103.0	35.0	101.0	0.0	0.339806	0	.	.	none	.	DNAH6	194	.	NM_001370	exon46	c.A7313G	p.Q2438R	TACGTCAAGAAAG	.	PASS	Atlas-SNP
FOXO1	2308	hgsc.bcm.edu	37	13	41239864	41239864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	32.0	14.0	31.0	0.0	0.4375	0	.	.	none	.	FOXO1	110	.	NM_002015	exon1	c.C486G	p.N162K	GGACAGGTTGCCC	.	PASS	Atlas-SNP
TMEM214	54867	hgsc.bcm.edu	37	2	27260571	27260571	+	Splice_Site	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	150.0	40.0	145.0	0.0	0.266667	0	.	.	none	.	TMEM214	41	.	NM_001083590	exon8	c.1017+1G>A	.	AAAGAGGTGAGGA	.	PASS	Atlas-SNP
ADAM21	8747	hgsc.bcm.edu	37	14	70926009	70926009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	234.0	66.0	205.0	0.0	0.282051	0	.	.	none	.	ADAM21	181	.	NM_003813	exon2	c.G1793A	p.R598K	ATTTAAGGATGAA	.	PASS	Atlas-SNP
OTUD4	54726	hgsc.bcm.edu	37	4	146059393	146059393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	140.0	45.0	152.0	0.0	0.321429	0	.	.	none	.	OTUD4	120	.	NM_001102653	exon21	c.A2339G	p.N780S	AATGGATTGGGTC	.	PASS	Atlas-SNP
CAMP	820	hgsc.bcm.edu	37	3	48265112	48265112	+	Silent	SNP	A	A	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	78.0	18.0	65.0	0.0	0.230769	0	.	.	none	.	CAMP	12	.	NM_004345	exon1	c.A120G	p.E40E	CAAGGAAGCTGTG	.	PASS	Atlas-SNP
TMEM62	80021	hgsc.bcm.edu	37	15	43476576	43476576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	239.0	66.0	216.0	0.0	0.276151	0	.	.	none	.	TMEM62	47	.	NM_024956	exon14	c.T1724C	p.V575A	TGCCTGTTCACCT	.	PASS	Atlas-SNP
HIST1H2BK	85236	hgsc.bcm.edu	37	6	27114200	27114200	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	137.0	49.0	135.0	0.0	0.357664	0	.	.	none	.	HIST1H2BK	68	.	NM_080593	exon1	c.G378A	p.K126K	AGTTTACTTAGCG	.	PASS	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	37	19	22156863	22156863	+	Missense_Mutation	SNP	C	C	A	rs202200782	bycluster	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	25.0	4.0	72.0	1.0	0.16	0.0138889	C|0.996;A|0.004	0.004	weak	ZNF208_ENST00000428290,NS,carcinoma,0,7	ZNF208	817	7	NM_007153	exon4	c.G973T	p.V325F	TTGAGACCTTACT	.	scavenged	Atlas-SNP
HIST1H1B	3009	hgsc.bcm.edu	37	6	27834916	27834916	+	Missense_Mutation	SNP	G	G	A	rs199758872	by1000genomes	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	136.0	40.0	108.0	0.0	0.294118	0	G|1.000;A|0.000	0.000	strong	.	HIST1H1B	54	.	NM_005322	exon1	c.C392T	p.A131V	TTCTTAGCTTTAG	.	PASS	Atlas-SNP
ST6GALNAC5	81849	hgsc.bcm.edu	37	1	77334232	77334232	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	210.0	50.0	203.0	0.0	0.238095	0	.	.	none	.	ST6GALNAC5	59	.	NM_030965	exon2	c.G66A	p.L22L	CAGCTTGTTGCTA	.	PASS	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	37	5	178549748	178549748	+	Silent	SNP	G	G	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	79.0	17.0	55.0	0.0	0.21519	0	.	.	none	.	ADAMTS2	190	.	NM_014244	exon20	c.C2985A	p.T995T	CTCCTGGGTGCCG	.	PASS	Atlas-SNP
DCAF12	25853	hgsc.bcm.edu	37	9	34125210	34125210	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	83.0	24.0	83.0	0.0	0.289157	0	.	.	none	.	DCAF12	37	.	NM_015397	exon2	c.C144T	p.Y48Y	CAAGTAGTATACT	.	PASS	Atlas-SNP
HEATR5A	25938	hgsc.bcm.edu	37	14	31819064	31819064	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	76.0	22.0	94.0	0.0	0.289474	0	.	.	none	.	HEATR5A	181	.	NM_015473	exon18	c.G2639A	p.W880X	CTAGCCCATGACT	.	PASS	Atlas-SNP
KHDRBS2	202559	hgsc.bcm.edu	37	6	62887168	62887168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	83.0	31.0	142.0	0.0	0.373494	0	.	.	none	KHDRBS2,NS,carcinoma,0,1	KHDRBS2	103	1	NM_152688	exon2	c.G141T	p.K47N	ATACTTCTTTTCT	.	PASS	Atlas-SNP
UBE2A	7319	hgsc.bcm.edu	37	X	118708862	118708862	+	Splice_Site	SNP	A	A	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	167.0	74.0	152.0	0.0	0.443114	0	.	.	none	.	UBE2A	43	.	NM_181762	exon2	c.45-2A>C	.	TCCCGAAGGTTGC	.	PASS	Atlas-SNP
LRRN3	54674	hgsc.bcm.edu	37	7	110764565	110764565	+	Silent	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	48.0	16.0	48.0	0.0	0.333333	0	.	.	none	.	LRRN3	132	.	NM_018334	exon2	c.T1737C	p.N579N	ATATAATCTTACT	.	PASS	Atlas-SNP
ABCD4	5826	hgsc.bcm.edu	37	14	74762572	74762572	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	72.0	21.0	61.0	0.0	0.291667	0	.	.	none	.	ABCD4	54	.	NM_005050	exon6	c.T653A	p.L218Q	CCCTCCAGCTTCT	.	PASS	Atlas-SNP
LRAT	9227	hgsc.bcm.edu	37	4	155665953	155665953	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	35.0	9.0	51.0	0.0	0.257143	0	.	.	none	.	LRAT	29	.	NM_004744	exon2	c.A475C	p.N159H	CTGTGGAACAACT	.	PASS	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	37	1	167096795	167096795	+	Silent	SNP	G	G	A	rs142434634	bycluster;byfrequency	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	81.0	15.0	72.0	0.0	0.185185	0	G|0.999;A|0.001	0.001	strong	DUSP27,right_upper_lobe,carcinoma,0,1	DUSP27	235	1	NM_001080426	exon5	c.G2427A	p.A809A	ACCCGCGGAAAGT	.	PASS	Atlas-SNP
KCNN2	3781	hgsc.bcm.edu	37	5	113698763	113698763	+	Silent	SNP	C	C	T	rs368298090		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	49.0	9.0	29.0	0.0	0.183673	0	.	.	weak	.	KCNN2	144	.	NM_021614	exon1	c.C291T	p.G97G	CGGTGGCGGGAGC	.	PASS	Atlas-SNP
PTPN6	5777	hgsc.bcm.edu	37	12	7061261	7061261	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	77.0	26.0	77.0	0.0	0.337662	0	.	.	none	.	PTPN6	42	.	NM_080548	exon3	c.C253T	p.Q85X	CAGCAGCAGGGTG	.	PASS	Atlas-SNP
SPECC1	92521	hgsc.bcm.edu	37	17	20107645	20107645	+	Splice_Site	SNP	G	G	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	51.0	11.0	33.0	0.0	0.215686	0	.	.	none	.	SPECC1	100	.	NM_001243439	exon4	c.284-1G>T	.	CTTTAAGGGGCCT	.	PASS	Atlas-SNP
CABIN1	23523	hgsc.bcm.edu	37	22	24447360	24447360	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	92.0	26.0	93.0	0.0	0.282609	0	.	.	none	.	CABIN1	153	.	NM_001199281	exon8	c.C730T	p.R244X	GGGCTGCGAAAAA	.	PASS	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	37	17	10400708	10400708	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	134.0	35.0	124.0	0.0	0.261194	0	.	.	none	.	MYH1	403	.	NM_005963	exon32	c.A4427C	p.K1476T	GATTCCTTTTGAG	.	PASS	Atlas-SNP
C1orf101	257044	hgsc.bcm.edu	37	1	244769022	244769022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	135.0	33.0	133.0	0.0	0.244444	0	.	.	none	.	C1orf101	158	.	NM_173807	exon18	c.G2329A	p.D777N	GTTAAAGACGTTG	.	PASS	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	37	3	154139035	154139035	+	Silent	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	251.0	66.0	240.0	0.0	0.262948	0	.	.	none	.	GPR149	134	.	NM_001038705	exon3	c.A1416G	p.K472K	TGTGCATTTGTTG	.	PASS	Atlas-SNP
CDK11B	984	hgsc.bcm.edu	37	1	1647901	1647901	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	238.0	14.0	212.0	0.0	0.0588235	0	.	.	none	.	CDK11B	37	.	NM_033486	exon5	c.G372A	p.V124V	TTCTTTCACTCTA	.	PASS	Atlas-SNP
RNF40	9810	hgsc.bcm.edu	37	16	30778068	30778068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	30.0	9.0	32.0	0.0	0.3	0	.	.	none	.	RNF40	83	.	NM_014771	exon11	c.G1300A	p.E434K	AGCGACGAGCTGG	.	PASS	Atlas-SNP
QSER1	79832	hgsc.bcm.edu	37	11	32975559	32975559	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	78.0	19.0	87.0	0.0	0.24359	0	.	.	none	.	QSER1	153	.	NM_001076786	exon5	c.A3947T	p.K1316M	CCTCAAAGCCCAT	.	PASS	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	37	8	144997818	144997818	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	41.0	9.0	23.0	0.0	0.219512	0	.	.	none	.	PLEC	1144	.	NM_201380	exon31	c.G6690A	p.A2230A	CTCCTCCGCCTCC	.	PASS	Atlas-SNP
ANO3	63982	hgsc.bcm.edu	37	11	26664763	26664763	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	200.0	59.0	190.0	0.0	0.295	0	.	.	none	ANO3,right_upper_lobe,carcinoma,0,1	ANO3	145	1	NM_031418	exon23	c.G2310A	p.A770A	TGTTGCGGCTTTT	.	PASS	Atlas-SNP
WDR36	134430	hgsc.bcm.edu	37	5	110428002	110428002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	83.0	12.0	78.0	0.0	0.144578	0	.	.	none	.	WDR36	111	.	NM_139281	exon1	c.G16T	p.G6C	ACTGAGGGCAGTC	.	PASS	Atlas-SNP
MSLN	10232	hgsc.bcm.edu	37	16	815722	815722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	76.0	16.0	81.0	2.0	0.210526	0.0246914	.	.	none	MSLN_ENST00000446427,NS,carcinoma,0,2	MSLN	109	2	NM_005823	exon11	c.C827T	p.S276F	GCTCCTCTCGGGA	.	scavenged	Atlas-SNP
ULK4	54986	hgsc.bcm.edu	37	3	41954353	41954353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	88.0	24.0	72.0	0.0	0.272727	0	.	.	none	.	ULK4	150	.	NM_017886	exon9	c.A842G	p.K281R	GCTTTCTTCCAAA	.	PASS	Atlas-SNP
P2RX4	5025	hgsc.bcm.edu	37	12	121670290	121670290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	56.0	13.0	59.0	0.0	0.232143	0	.	.	none	.	P2RX4	27	.	NM_001256796	exon10	c.G1006A	p.D336N	CGCTTCGACATCA	.	PASS	Atlas-SNP
ABCA3	21	hgsc.bcm.edu	37	16	2374447	2374447	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	13.0	5.0	20.0	0.0	0.384615	0	.	.	none	ABCA3,NS,carcinoma,0,1	ABCA3	176	1	NM_001089	exon6	c.C405T	p.F135F	GTGCTCGAAGACC	.	PASS	Atlas-SNP
FOXB1	27023	hgsc.bcm.edu	37	15	60297267	60297267	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	42.0	9.0	35.0	0.0	0.214286	0	.	.	none	.	FOXB1	29	.	NM_012182	exon2	c.G105A	p.P35P	GCTGCCGCTGAGC	.	PASS	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	37	1	16256987	16256987	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	74.0	15.0	79.0	0.0	0.202703	0	.	.	none	.	SPEN	374	.	NM_015001	exon11	c.C4252T	p.R1418X	CGTGAGCGAGATG	.	PASS	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	37	1	12398337	12398337	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	74.0	22.0	69.0	0.0	0.297297	0	.	.	none	.	VPS13D	316	.	NM_015378	exon40	c.C8601T	p.N2867N	GACTAACCTAGAG	.	PASS	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	37	3	124165041	124165041	+	Missense_Mutation	SNP	G	G	A	rs375081975		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	59.0	10.0	61.0	0.0	0.169492	0	.	.	weak	.	KALRN	556	.	NM_003947	exon20	c.G3341A	p.R1114H	AGAATCGCGTGCT	.	PASS	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	37	3	89480468	89480468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	94.0	23.0	93.0	0.0	0.244681	0	.	.	none	EPHA3,colon,carcinoma,-1,5	EPHA3	501	5	NM_005233	exon13	c.C2305T	p.R769C	CTTTCGCGTGTCC	.	PASS	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	37	6	26157108	26157108	+	Missense_Mutation	SNP	G	G	A	rs201935674	by1000genomes	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	63.0	18.0	54.0	0.0	0.285714	0	G|0.999;A|0.001	0.001	strong	HIST1H1E,NS,lymphoid_neoplasm,-1,3	HIST1H1E	69	3	NM_005321	exon1	c.G490A	p.A164T	GCTGCAGCTGCTG	.	PASS	Atlas-SNP
OCA2	4948	hgsc.bcm.edu	37	15	28202854	28202854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	43.0	16.0	42.0	0.0	0.372093	0	.	.	none	.	OCA2	173	.	NM_000275	exon16	c.G1664A	p.R555H	GTCAGGCGCCAGA	.	PASS	Atlas-SNP
FAM47B	170062	hgsc.bcm.edu	37	X	34961271	34961271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	89.0	37.0	80.0	0.0	0.41573	0	.	.	none	.	FAM47B	209	.	NM_152631	exon1	c.C323T	p.S108L	AGCTCTCGCCAGT	.	PASS	Atlas-SNP
BPIFA1	51297	hgsc.bcm.edu	37	20	31825915	31825915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	48.0	14.0	41.0	0.0	0.291667	0	.	.	none	PLUNC,NS,carcinoma,-1,1	.	.	1	NM_016583	exon3	c.C215T	p.P72L	ACCTTCCGCTCCT	.	PASS	Atlas-SNP
SCN5A	6331	hgsc.bcm.edu	37	3	38620946	38620946	+	Missense_Mutation	SNP	G	G	A	rs1805125	bycluster;by1000genomes	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	66.0	19.0	54.0	0.0	0.287879	0	G|0.994;A|0.006	0.006	strong	SCN5A,brain,primitive_neuroectodermal_tumour-medulloblastoma,+1,1	SCN5A	634	1	NM_198056	exon18	c.C3269T	p.P1090L	GAATCCGGAGGGG	.	PASS	Atlas-SNP
GABRA1	2554	hgsc.bcm.edu	37	5	161317976	161317976	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	101.0	18.0	88.0	0.0	0.178218	0	.	.	none	.	GABRA1	132	.	NM_001127643	exon9	c.T776A	p.L259Q	CATACCTGCCATG	.	PASS	Atlas-SNP
KCNJ3	3760	hgsc.bcm.edu	37	2	155566166	155566166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	239.0	54.0	248.0	0.0	0.225941	0	.	.	none	KCNJ3,NS,carcinoma,0,2	KCNJ3	126	2	NM_001260509	exon2	c.G754A	p.D252N	GAACTGGATGTAG	.	PASS	Atlas-SNP
NCKAP5	344148	hgsc.bcm.edu	37	2	133636475	133636475	+	Silent	SNP	C	C	T	rs200896980	bycluster;by1000genomes	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	94.0	25.0	86.0	0.0	0.265957	0	C|1.000;T|0.000	0.000	strong	NCKAP5_ENST00000405974,colon,carcinoma,-1,2	NCKAP5	322	2	NM_207481	exon9	c.G594A	p.A198A	AGCCAACGCTGAA	.	PASS	Atlas-SNP
DSG1	1828	hgsc.bcm.edu	37	18	28926102	28926102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	71.0	12.0	83.0	0.0	0.169014	0	.	.	none	DSG1,bladder,carcinoma,-2,1	DSG1	176	1	NM_001942	exon14	c.A2041G	p.M681V	AATTCTATGAGGG	.	PASS	Atlas-SNP
KAT6A	7994	hgsc.bcm.edu	37	8	41834600	41834600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	221.0	64.0	169.0	0.0	0.289593	0	.	.	none	.	.	.	.	NM_001099412	exon8	c.T1289C	p.V430A	TCCACCACTTCCC	.	PASS	Atlas-SNP
KIAA1549L	25758	hgsc.bcm.edu	37	11	33667498	33667498	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	108.0	26.0	78.0	0.0	0.240741	0	.	.	none	.	.	.	.	NM_012194	exon16	c.G4785A	p.P1595P	CGCTCCGGGGACC	.	PASS	Atlas-SNP
OR4N2	390429	hgsc.bcm.edu	37	14	20295818	20295818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	163.0	39.0	154.0	0.0	0.239264	0	.	.	none	OR4N2,NS,carcinoma,-2,2	OR4N2	125	2	NM_001004723	exon1	c.G211A	p.A71T	CTGGATGCATCCT	.	PASS	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	37	1	152128876	152128876	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	280.0	51.0	259.0	1.0	0.182143	0.003861	.	.	none	RPTN,colon,carcinoma,0,1	RPTN	123	1	NM_001122965	exon3	c.A699C	p.K233N	AATTGGTTTTTCA	.	scavenged	Atlas-SNP
PC	5091	hgsc.bcm.edu	37	11	66636367	66636367	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	92.0	8.0	123.0	0.0	0.0869565	0	.	.	none	.	PC	116	.	NM_000920	exon9	c.G972C	p.E324D	GTTGACCTCGATG	.	PASS	Atlas-SNP
ACAD10	80724	hgsc.bcm.edu	37	12	112182836	112182836	+	Missense_Mutation	SNP	G	G	A	rs147958599		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	27.0	5.0	26.0	0.0	0.185185	0	G|1.000;A|0.000	0.000	weak	.	ACAD10	93	.	NM_001136538	exon14	c.G2197A	p.E733K	CTGATCGAAGACC	.	PASS	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950750	79950750	+	Silent	SNP	T	T	G	rs1047489	bycluster	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	16.0	16.0	0.0	0.0	1	.	.	.	weak	.	MSH3	129	.	NM_002439	exon1	c.T204G	p.A68A	CCCAGCTCCCGCC	.	PASS	Atlas-SNP
TAS2R16	50833	hgsc.bcm.edu	37	7	122634896	122634896	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	69.0	29.0	70.0	0.0	0.42029	0	.	.	none	.	TAS2R16	57	.	NM_016945	exon1	c.G793C	p.V265L	CATAGACAAAAGC	.	PASS	Atlas-SNP
EYA1	2138	hgsc.bcm.edu	37	8	72267114	72267114	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	90.0	23.0	78.0	0.0	0.255556	0	.	.	none	.	EYA1	108	.	NM_172059	exon2	c.G27A	p.P9P	GCTATGCGGGCTG	.	PASS	Atlas-SNP
DSG4	147409	hgsc.bcm.edu	37	18	28966774	28966774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	64.0	15.0	74.0	0.0	0.234375	0	.	.	none	.	DSG4	343	.	NM_001134453	exon3	c.A208G	p.I70V	AACCCCATTGCCA	.	PASS	Atlas-SNP
ADIPOR1	51094	hgsc.bcm.edu	37	1	202915676	202915676	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	109.0	17.0	74.0	0.0	0.155963	0	.	.	none	ADIPOR1,NS,carcinoma,0,1	ADIPOR1	32	1	NM_015999	exon4	c.C321T	p.N107N	ATAGTCGTTGTCC	.	PASS	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	37	6	26056471	26056471	+	Silent	SNP	C	C	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	119.0	36.0	120.0	0.0	0.302521	0	.	.	none	.	HIST1H1C	80	.	NM_005319	exon1	c.G186C	p.L62L	TTTTTTCAGAGCA	.	PASS	Atlas-SNP
NOL9	79707	hgsc.bcm.edu	37	1	6614339	6614339	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	131.0	37.0	117.0	0.0	0.282443	0	.	.	none	.	NOL9	49	.	NM_024654	exon1	c.C224G	p.A75G	CTCCGGGCCGCCG	.	PASS	Atlas-SNP
ZNF135	7694	hgsc.bcm.edu	37	19	58574874	58574874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	73.0	13.0	71.0	0.0	0.178082	0	.	.	none	.	ZNF135	159	.	NM_007134	exon3	c.C257T	p.A86V	TGTGGGCGGTGGA	.	PASS	Atlas-SNP
DIXDC1	85458	hgsc.bcm.edu	37	11	111851576	111851576	+	Splice_Site	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	64.0	13.0	51.0	0.0	0.203125	0	.	.	none	.	DIXDC1	50	.	NM_001037954	exon6	c.769+2T>C	.	AACAGGTACTATC	.	PASS	Atlas-SNP
MCL1	4170	hgsc.bcm.edu	37	1	150551347	150551347	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	63.0	15.0	52.0	0.0	0.238095	0	.	.	none	MCL1,NS,carcinoma,0,1	MCL1	27	1	NM_182763	exon1	c.G660A	p.V220V	GCGCTGCACGCCA	.	PASS	Atlas-SNP
SLC17A6	57084	hgsc.bcm.edu	37	11	22364888	22364888	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	27.0	8.0	22.0	0.0	0.296296	0	.	.	none	.	SLC17A6	135	.	NM_020346	exon3	c.C435T	p.I145I	CTACATCGCGTCT	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	37	7	100682814	100682814	+	Missense_Mutation	SNP	A	A	G	rs201007776		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	76.0	5.0	55.0	2.0	0.0657895	0.0363636	A|0.999;G|0.001	0.001	weak	MUC17,NS,carcinoma,0,1	MUC17	804	1	NM_001040105	exon3	c.A8117G	p.N2706S	TGGCCAATTCTGA	.	scavenged	Atlas-SNP
C1orf64	149563	hgsc.bcm.edu	37	1	16332643	16332643	+	Silent	SNP	C	C	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	94.0	16.0	73.0	0.0	0.170213	0	.	.	none	.	C1orf64	16	.	NM_178840	exon2	c.C312G	p.A104A	CCTTGCCCAGGCC	.	PASS	Atlas-SNP
DST	667	hgsc.bcm.edu	37	6	56483209	56483209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	155.0	35.0	134.0	0.0	0.225806	0	.	.	none	.	DST	1427	.	NM_001723	exon23	c.G5623A	p.D1875N	TACAGTCTTTGGC	.	PASS	Atlas-SNP
ZFAT	57623	hgsc.bcm.edu	37	8	135612768	135612768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	159.0	33.0	139.0	0.0	0.207547	0	.	.	none	.	ZFAT	265	.	NM_020863	exon7	c.A2386G	p.I796V	GCAAGATGTTACT	.	PASS	Atlas-SNP
GMPR2	51292	hgsc.bcm.edu	37	14	24702483	24702483	+	Silent	SNP	G	G	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	57.0	19.0	53.0	0.0	0.333333	0	.	.	none	.	GMPR2	37	.	NM_016576	exon1	c.G78T	p.V26V	CGATGTGAAACTG	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240371409	240371409	+	Silent	SNP	G	G	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	49.0	4.0	23.0	2.0	0.0816327	0.0869565	.	.	none	FMN2,NS,neuroblastoma,0,1	FMN2	451	1	NM_020066	exon5	c.G3297T	p.P1099P	CCCTCCGCCCCCT	.	scavenged	Atlas-SNP
ZNF841	284371	hgsc.bcm.edu	37	19	52569180	52569180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	142.0	35.0	123.0	0.0	0.246479	0	.	.	none	.	ZNF841	183	.	NM_001136499	exon7	c.C1955T	p.P652L	TTATAAGGTTTCT	.	PASS	Atlas-SNP
SALL3	27164	hgsc.bcm.edu	37	18	76756928	76756928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	53.0	9.0	47.0	0.0	0.169811	0	.	.	none	SALL3,colon,carcinoma,0,1	SALL3	162	1	NM_171999	exon3	c.C3509T	p.A1170V	CCCCCGCGAGACG	.	scavenged	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9062349	9062349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	111.0	24.0	123.0	0.0	0.216216	0	.	.	none	.	MUC16	4315	.	NM_024690	exon3	c.A25097T	p.Q8366L	GAAGATTGTGATT	.	PASS	Atlas-SNP
FSCB	84075	hgsc.bcm.edu	37	14	44973798	44973798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	122.0	27.0	148.0	0.0	0.221311	0	.	.	none	FSCB,NS,carcinoma,0,1	FSCB	173	1	NM_032135	exon1	c.C2393T	p.S798F	GTATTAGACAAAT	.	PASS	Atlas-SNP
LPHN2	23266	hgsc.bcm.edu	37	1	82409302	82409302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	120.0	33.0	87.0	0.0	0.275	0	.	.	none	.	LPHN2	464	.	NM_012302	exon5	c.C1047A	p.N349K	ATTAAACCGAGGA	.	PASS	Atlas-SNP
RGS12	6002	hgsc.bcm.edu	37	4	3418713	3418713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	113.0	32.0	103.0	0.0	0.283186	0	.	.	none	RGS12,NS,carcinoma,-1,2	RGS12	128	2	NM_002926	exon8	c.C2501T	p.A834V	TCCTGGCGGAAGT	.	PASS	Atlas-SNP
MYH2	4620	hgsc.bcm.edu	37	17	10428151	10428151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	267.0	73.0	271.0	0.0	0.273408	0	.	.	none	.	MYH2	390	.	NM_017534	exon34	c.G4894A	p.E1632K	GGATTTCCATTTC	.	PASS	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	37	19	22157288	22157288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	94.0	28.0	135.0	0.0	0.297872	0	.	.	none	.	ZNF208	817	.	NM_007153	exon4	c.G548A	p.C183Y	AGCATGCAAAATG	.	PASS	Atlas-SNP
PCDHA11	56138	hgsc.bcm.edu	37	5	140251070	140251070	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	247.0	62.0	221.0	0.0	0.251012	0	.	.	none	.	PCDHA11	209	.	NM_018902	exon1	c.C2382T	p.H794H	AAATCACCCCGGA	.	PASS	Atlas-SNP
RGS8	85397	hgsc.bcm.edu	37	1	182638779	182638779	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	103.0	22.0	85.0	0.0	0.213592	0	.	.	none	.	RGS8	51	.	NM_001102450	exon3	c.G6A	p.A2A	TAAGGCCGCCATA	.	PASS	Atlas-SNP
LNX1	84708	hgsc.bcm.edu	37	4	54362377	54362377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	89.0	24.0	84.0	0.0	0.269663	0	.	.	none	.	LNX1	139	.	NM_001126328	exon6	c.G1163T	p.S388I	TCGGGGCTACTTT	.	PASS	Atlas-SNP
PCDHA2	56146	hgsc.bcm.edu	37	5	140175767	140175767	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	81.0	20.0	79.0	0.0	0.246914	0	.	.	none	.	PCDHA2	404	.	NM_031495	exon1	c.G1218A	p.S406S	CTACTCGTTGGTG	.	PASS	Atlas-SNP
MTA2	9219	hgsc.bcm.edu	37	11	62368098	62368098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	72.0	14.0	65.0	0.0	0.194444	0	.	.	none	MTA2,NS,carcinoma,0,1	MTA2	54	1	NM_004739	exon2	c.A92G	p.N31S	ACCTTGTTGAGCT	.	PASS	Atlas-SNP
ST8SIA6	338596	hgsc.bcm.edu	37	10	17363320	17363320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	70.0	17.0	63.0	0.0	0.242857	0	.	.	none	.	ST8SIA6	85	.	NM_001004470	exon8	c.G754A	p.A252T	ATAGGGCTTTTTT	.	PASS	Atlas-SNP
FGD4	121512	hgsc.bcm.edu	37	12	32734984	32734984	+	Silent	SNP	A	A	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	114.0	28.0	113.0	0.0	0.245614	0	.	.	none	.	FGD4	86	.	NM_139241	exon4	c.A183G	p.T61T	AACCACACCTCAA	.	PASS	Atlas-SNP
STAT3	6774	hgsc.bcm.edu	37	17	40475068	40475068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	70.0	19.0	74.0	0.0	0.271429	0	.	.	none	STAT3,lymph_node,lymphoid_neoplasm,0,4	STAT3	268	4	NM_003150	exon20	c.C1842G	p.S614R	TTCTTTGCTGCTT	.	PASS	Atlas-SNP
VWDE	221806	hgsc.bcm.edu	37	7	12381703	12381703	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	54.0	8.0	64.0	0.0	0.148148	0	.	.	none	.	VWDE	123	.	NM_001135924	exon23	c.G4252T	p.G1418X	TGGGTCCATACCA	.	PASS	Atlas-SNP
HLA-B	3106	hgsc.bcm.edu	37	6	31324576	31324576	+	Nonsense_Mutation	SNP	G	G	A	rs151341159	bycluster	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	75.0	18.0	84.0	0.0	0.24	0	.	.	weak	.	HLA-B	54	.	NM_005514	exon2	c.C232T	p.Q78X	CCTCCTGCTCTAT	.	PASS	Atlas-SNP
CFH	3075	hgsc.bcm.edu	37	1	196716285	196716285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	576.0	99.0	409.0	0.0	0.171875	0	.	.	none	.	CFH	251	.	NM_000186	exon22	c.G3538A	p.A1180T	AACATAGCATTAA	.	PASS	Atlas-SNP
MAGEL2	54551	hgsc.bcm.edu	37	15	23890158	23890158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	85.0	14.0	92.0	0.0	0.164706	0	.	.	none	.	MAGEL2	108	.	NM_019066	exon1	c.C2732A	p.P911Q	GGCCTTGGGCCCT	.	PASS	Atlas-SNP
LCE1A	353131	hgsc.bcm.edu	37	1	152800123	152800123	+	Missense_Mutation	SNP	G	G	A	rs141081392	bycluster;byfrequency	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	162.0	34.0	142.0	0.0	0.209877	0	A|0.000;G|0.999;T|0.000	0.000	strong	.	LCE1A	23	.	NM_178348	exon1	c.G175A	p.G59S	GGGGGCGGCTGCA	.	PASS	Atlas-SNP
MB21D2	151963	hgsc.bcm.edu	37	3	192516412	192516412	+	Silent	SNP	G	G	A	rs138837641	bycluster;by1000genomes	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	59.0	21.0	62.0	0.0	0.355932	0	G|1.000;A|0.000	0.000	strong	MB21D2,NS,carcinoma,0,1	MB21D2	75	1	NM_178496	exon2	c.C1239T	p.T413T	AATGGCGGTGCGC	.	PASS	Atlas-SNP
EPHA6	285220	hgsc.bcm.edu	37	3	97466293	97466293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	123.0	19.0	99.0	0.0	0.154472	0	.	.	none	.	EPHA6	439	.	NM_001080448	exon17	c.C3155T	p.P1052L	AAGTTCCGGAATA	.	PASS	Atlas-SNP
GHR	2690	hgsc.bcm.edu	37	5	42689036	42689036	+	Nonsense_Mutation	SNP	C	C	T	rs121909358		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	134.0	31.0	129.0	0.0	0.231343	0	.	.	weak	.	GHR	94	.	NM_001242399	exon4	c.C202T	p.R68X	CCTGAGCGAGAGA	.	PASS	Atlas-SNP
CTDSP2	10106	hgsc.bcm.edu	37	12	58217705	58217705	+	Missense_Mutation	SNP	T	T	C	rs78662830	bycluster;alternate_allele	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	29.0	8.0	23.0	0.0	0.275862	0	.	.	alt	.	CTDSP2	25	.	NM_005730	exon7	c.A672G	p.I224M	GTGGAATATGTAA	.	PASS	Atlas-SNP
TSSC1	7260	hgsc.bcm.edu	37	2	3261073	3261073	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	60.0	13.0	90.0	0.0	0.216667	0	.	.	none	.	TSSC1	39	.	NM_003310	exon4	c.C413G	p.A138G	TACCAGGCCATGT	.	PASS	Atlas-SNP
UAP1	6675	hgsc.bcm.edu	37	1	162549371	162549371	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	38.0	10.0	23.0	0.0	0.263158	0	.	.	none	.	UAP1	47	.	NM_003115	exon4	c.G639A	p.K213K	AGAGAAGAACAAA	.	PASS	Atlas-SNP
EFHC1	114327	hgsc.bcm.edu	37	6	52288818	52288818	+	Silent	SNP	G	G	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	58.0	13.0	47.0	0.0	0.224138	0	.	.	none	EFHC1,right_lower_lobe,carcinoma,0,1	EFHC1	68	1	NM_018100	exon2	c.G138C	p.G46G	AGTTGGGATAGGC	.	PASS	Atlas-SNP
DISC1	27185	hgsc.bcm.edu	37	1	231931010	231931010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	102.0	24.0	77.0	0.0	0.235294	0	.	.	none	.	DISC1	207	.	NM_001164537	exon8	c.C1753A	p.L585I	AAATCCCTCAACT	.	PASS	Atlas-SNP
SEMA3E	9723	hgsc.bcm.edu	37	7	83036446	83036446	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	54.0	14.0	48.0	0.0	0.259259	0	.	.	none	.	SEMA3E	125	.	NM_012431	exon7	c.C780T	p.H260H	AATTGCGTGAGCA	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138372	37138372	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	44.0	10.0	58.0	0.0	0.227273	0	.	.	none	.	PIM1	71	.	NM_001243186	exon1	c.C294T	p.N98N	AATCAACTCGCTT	.	PASS	Atlas-SNP
CRTAM	56253	hgsc.bcm.edu	37	11	122726409	122726409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	116.0	20.0	66.0	0.0	0.172414	0	.	.	none	.	CRTAM	50	.	NM_019604	exon5	c.C497T	p.T166M	GTGGAACGCTCCA	.	PASS	Atlas-SNP
CBLN2	147381	hgsc.bcm.edu	37	18	70205920	70205920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	96.0	33.0	83.0	0.0	0.34375	0	.	.	none	.	CBLN2	41	.	NM_182511	exon4	c.G445A	p.V149M	TGACCACGTGGAA	.	PASS	Atlas-SNP
FAM120B	84498	hgsc.bcm.edu	37	6	170704591	170704591	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	61.0	20.0	46.0	0.0	0.327869	0	.	.	none	.	FAM120B	108	.	NM_032448	exon9	c.G2616A	p.Q872Q	AAGACAGGGCTCC	.	PASS	Atlas-SNP
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493827	77493827	+	Silent	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	27.0	5.0	25.0	0.0	0.185185	0	.	.	none	.	IRF2BPL	40	.	NM_024496	exon1	c.A309G	p.Q103Q	TTGCTGTTGCGCG	.	PASS	Atlas-SNP
NBPF10	100132406	hgsc.bcm.edu	37	1	145293535	145293535	+	Missense_Mutation	SNP	C	C	G	rs55936365		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	86.0	7.0	62.0	0.0	0.0813954	0	.	.	weak	NBPF10,NS,carcinoma,0,2	NBPF10	221	2	NM_001039703	exon1	c.C130G	p.L44V	TGTTTTCTAACTC	.	scavenged	Atlas-SNP
SOCS1	8651	hgsc.bcm.edu	37	16	11349190	11349190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	27.0	12.0	23.0	0.0	0.444444	0	.	.	none	.	SOCS1	84	.	NM_003745	exon2	c.C146T	p.A49V	CCGGGGGCCGGGG	.	PASS	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879	bycluster	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	57.0	5.0	49.0	1.0	0.0877193	0.0204082	.	.	weak	PRKCSH,caecum,carcinoma,0,1	PRKCSH	55	1	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	scavenged	Atlas-SNP
TCF3	6929	hgsc.bcm.edu	37	19	1650209	1650209	+	Silent	SNP	G	G	A	rs373351484	alternate_allele	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	37.0	11.0	22.0	0.0	0.297297	0	.	.	alt	.	TCF3	72	.	NM_003200	exon2	c.C39T	p.D13D	CTCCTTGTCTGTG	.	PASS	Atlas-SNP
TGM7	116179	hgsc.bcm.edu	37	15	43577071	43577071	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	95.0	38.0	84.0	0.0	0.4	0	.	.	none	.	TGM7	86	.	NM_052955	exon7	c.C945T	p.I315I	CGTATCGATGGTC	.	PASS	Atlas-SNP
AURKB	9212	hgsc.bcm.edu	37	17	8108608	8108608	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	65.0	20.0	52.0	0.0	0.307692	0	.	.	none	.	AURKB	47	.	NM_004217	exon8	c.T787A	p.C263S	CATAGCAAAGCAC	.	PASS	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	37	6	26156985	26156985	+	Missense_Mutation	SNP	G	G	C	rs199659170	by1000genomes;alternate_allele	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	88.0	24.0	67.0	0.0	0.272727	0	G|1.000;A|0.000	.	alt	.	HIST1H1E	69	.	NM_005321	exon1	c.G367C	p.A123P	AAAAAGGCAGGCG	.	PASS	Atlas-SNP
HIST1H1D	3007	hgsc.bcm.edu	37	6	26234976	26234976	+	Silent	SNP	C	C	T	rs150400552	alternate_allele	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	179.0	53.0	161.0	0.0	0.296089	0	C|1.000;A|0.000	.	alt	.	HIST1H1D	40	.	NM_005320	exon1	c.G186A	p.A62A	CTTAAGCGCGGCC	.	PASS	Atlas-SNP
TMEM102	284114	hgsc.bcm.edu	37	17	7339603	7339603	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	36.0	8.0	29.0	0.0	0.222222	0	.	.	none	.	TMEM102	11	.	NM_178518	exon3	c.G305C	p.G102A	ATCTGGGGCATGC	.	PASS	Atlas-SNP
ARID5B	84159	hgsc.bcm.edu	37	10	63661942	63661942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	133.0	30.0	155.0	0.0	0.225564	0	.	.	none	.	ARID5B	125	.	NM_032199	exon2	c.C46T	p.H16Y	GGCTTGCACGGAC	.	PASS	Atlas-SNP
MUC21	394263	hgsc.bcm.edu	37	6	30954618	30954618	+	Silent	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	37.0	5.0	23.0	2.0	0.135135	0.0869565	.	.	none	MUC21,rectum,carcinoma,0,2	MUC21	98	2	NM_001010909	exon2	c.T666C	p.A222A	TGGGGCTGGCACA	.	scavenged	Atlas-SNP
PTPN6	5777	hgsc.bcm.edu	37	12	7067131	7067131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	42.0	20.0	39.0	0.0	0.47619	0	.	.	none	.	PTPN6	42	.	NM_080548	exon11	c.A1262G	p.D421G	GGCCCGACCATGG	.	PASS	Atlas-SNP
DNMT3L	29947	hgsc.bcm.edu	37	21	45680710	45680710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	133.0	31.0	131.0	0.0	0.233083	0	.	.	none	.	DNMT3L	33	.	NM_013369	exon3	c.A119G	p.Y40C	ACTTCATATGCAA	.	PASS	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	37	12	20522508	20522508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	63.0	17.0	58.0	0.0	0.269841	0	.	.	none	.	PDE3A	184	.	NM_000921	exon1	c.C290T	p.A97V	CGGCGGCGGCGGA	.	PASS	Atlas-SNP
JAG1	182	hgsc.bcm.edu	37	20	10633195	10633195	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	66.0	16.0	88.0	0.0	0.242424	0	.	.	none	JAG1_ENST00000254958,colon,carcinoma,0,2	JAG1	213	2	NM_000214	exon6	c.G807A	p.P269P	GCATCCCGGGTGT	.	PASS	Atlas-SNP
UGT2B7	7364	hgsc.bcm.edu	37	4	69962771	69962771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	205.0	48.0	165.0	0.0	0.234146	0	.	.	none	.	UGT2B7	79	.	NM_001074	exon1	c.A533G	p.Y178C	CTGGCTACACTTT	.	PASS	Atlas-SNP
PGR	5241	hgsc.bcm.edu	37	11	100999588	100999588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	49.0	15.0	56.0	0.0	0.306122	0	.	.	none	.	PGR	115	.	NM_000926	exon1	c.G214A	p.E72K	TCTTTTCGTCGGA	.	PASS	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	37	6	90466006	90466006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	129.0	34.0	126.0	0.0	0.263566	0	.	.	none	MDN1,NS,carcinoma,0,1	MDN1	478	1	NM_014611	exon20	c.G2806A	p.G936R	TGATTCCTTGCAC	.	PASS	Atlas-SNP
PTCHD4	442213	hgsc.bcm.edu	37	6	47976501	47976501	+	Missense_Mutation	SNP	C	C	T	rs143420847	bycluster;by1000genomes	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	116.0	34.0	90.0	0.0	0.293103	0	C|1.000;T|0.000	0.000	strong	.	.	.	.	NM_001013732	exon2	c.G776A	p.R259H	TTACTGCGCAAGC	.	PASS	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	37	1	201182456	201182456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	135.0	25.0	88.0	0.0	0.185185	0	.	.	none	.	IGFN1	220	.	NM_001164586	exon12	c.C8435T	p.P2812L	GGAGGCCTGGCTC	.	PASS	Atlas-SNP
FDPS	2224	hgsc.bcm.edu	37	1	155288031	155288031	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	73.0	20.0	36.0	0.0	0.273973	0	.	.	none	FDPS,right_lower_lobe,carcinoma,0,1	FDPS	41	1	NM_001135821	exon6	c.C633T	p.L211L	GAAGCTCTATTGC	.	PASS	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	37	2	238249705	238249705	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	105.0	39.0	80.0	0.0	0.371429	0	.	.	none	.	COL6A3	608	.	NM_004369	exon38	c.C7854T	p.I2618I	CATGTCGATGTCC	.	PASS	Atlas-SNP
PTEN	5728	hgsc.bcm.edu	37	10	89720852	89720852	+	Nonsense_Mutation	SNP	C	C	T	rs121909231	bycluster	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	160.0	28.0	157.0	0.0	0.175	0	.	.	weak	PTEN,colon,carcinoma,-1,27	PTEN	3652	27	NM_000314	exon8	c.C1003T	p.R335X	GCCAACCGATACT	.	PASS	Atlas-SNP
ZNF451	26036	hgsc.bcm.edu	37	6	56966784	56966784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	45.0	13.0	36.0	0.0	0.288889	0	.	.	none	.	ZNF451	181	.	NM_001257273	exon4	c.C1570G	p.H524D	AAAGCACATTATC	.	PASS	Atlas-SNP
TTC30B	150737	hgsc.bcm.edu	37	2	178415820	178415820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	291.0	76.0	239.0	0.0	0.261168	0	.	.	none	.	TTC30B	44	.	NM_152517	exon1	c.G1672A	p.G558R	AATTTCCTTTGGC	.	PASS	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	37	1	240635709	240635709	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	172.0	32.0	151.0	0.0	0.186047	0	.	.	none	.	FMN2	451	.	NM_020066	exon17	c.G5098T	p.G1700X	AAGAAAGGAAAAT	.	PASS	Atlas-SNP
MAN2C1	4123	hgsc.bcm.edu	37	15	75660458	75660458	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	61.0	16.0	51.0	0.0	0.262295	0	.	.	none	.	MAN2C1	76	.	NM_001256494	exon2	c.G183A	p.Q61Q	GTCCCGCTGGACT	.	PASS	Atlas-SNP
PCDHA9	9752	hgsc.bcm.edu	37	5	140229661	140229661	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	74.0	24.0	76.0	0.0	0.324324	0	.	.	none	.	PCDHA9	373	.	NM_031857	exon1	c.G1581C	p.E527D	CGAGGAGCTGGAG	.	PASS	Atlas-SNP
FMO2	2327	hgsc.bcm.edu	37	1	171174750	171174750	+	Missense_Mutation	SNP	G	G	A	rs187393653	bycluster;by1000genomes;alternate_allele	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	57.0	11.0	51.0	0.0	0.192982	0	G|1.000;T|0.000	.	alt	FMO2,NS,carcinoma,0,2	FMO2	66	2	NM_001460	exon7	c.G1160A	p.R387H	AAGCTCGTTGGGT	.	PASS	Atlas-SNP
SLC5A5	6528	hgsc.bcm.edu	37	19	17984984	17984984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	62.0	16.0	76.0	0.0	0.258065	0	.	.	none	.	SLC5A5	67	.	NM_000453	exon2	c.G395T	p.C132F	GGCTCTGCGGGAC	.	PASS	Atlas-SNP
SMPDL3B	27293	hgsc.bcm.edu	37	1	28282207	28282207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	68.0	16.0	67.0	0.0	0.235294	0	.	.	none	.	SMPDL3B	54	.	NM_001009568	exon6	c.G703A	p.G235S	ATTGTCGGCCACG	.	PASS	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	37	1	39908411	39908411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	113.0	30.0	112.0	0.0	0.265487	0	.	.	none	.	MACF1	909	.	NM_012090	exon75	c.A12953G	p.H4318R	TGGCTCATCAAGC	.	PASS	Atlas-SNP
TPD52L2	7165	hgsc.bcm.edu	37	20	62521256	62521256	+	Missense_Mutation	SNP	G	G	A	rs143876889		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	32.0	11.0	55.0	0.0	0.34375	0	G|1.000;A|0.000	0.000	weak	.	TPD52L2	20	.	NM_001243895	exon6	c.G530A	p.R177Q	CTCAGCGGGGAGT	.	PASS	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	37	2	210680092	210680092	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	97.0	17.0	92.0	0.0	0.175258	0	.	.	none	.	UNC80	280	.	NM_182587	exon9	c.C1312T	p.L438L	TCAGACCTGGGCA	.	PASS	Atlas-SNP
TH	7054	hgsc.bcm.edu	37	11	2189155	2189155	+	Silent	SNP	C	C	T	rs376615793		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	95.0	48.0	92.0	0.0	0.505263	0	.	.	weak	TH,colon,carcinoma,-1,1	TH	43	1	NM_199292	exon6	c.G678A	p.S226S	CTGGTCCGAGAAG	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230278	23230278	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	108.0	30.0	136.0	0.0	0.277778	0	.	.	none	IGLL5,NS,lymphoid_neoplasm,0,1	IGLL5	26	1	NM_001178126	exon1	c.G45A	p.E15E	TGAGGAGCTGGGC	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203276387	203276387	+	Silent	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	57.0	8.0	47.0	0.0	0.140351	0	.	.	none	.	BTG2	16	.	NM_006763	exon2	c.C298T	p.L100L	AGCGAGCTGACCC	.	PASS	Atlas-SNP
DNAH17	8632	hgsc.bcm.edu	37	17	76450728	76450728	+	Silent	SNP	G	G	A	rs148972892	bycluster;by1000genomes	TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	64.0	19.0	42.0	0.0	0.296875	0	G|1.000;A|0.000	0.000	strong	.	DNAH17	347	.	NM_173628	exon64	c.C10230T	p.D3410D	GGCCACGTCCGCG	.	PASS	Atlas-SNP
OR5AP2	338675	hgsc.bcm.edu	37	11	56409003	56409003	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	127.0	21.0	116.0	0.0	0.165354	0	.	.	none	OR5AP2,NS,carcinoma,+2,1	OR5AP2	69	1	NM_001002925	exon1	c.A913C	p.K305Q	GGGCCTTTTTTAC	.	PASS	Atlas-SNP
C1orf114	57821	hgsc.bcm.edu	37	1	169391492	169391492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	441.0	87.0	357.0	0.0	0.197279	0	.	.	none	.	C1orf114	67	.	NM_021179	exon3	c.G177A	p.M59I	GTGCTCCATTACT	.	PASS	Atlas-SNP
PAQR9	344838	hgsc.bcm.edu	37	3	142681479	142681479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	79.0	25.0	58.0	0.0	0.316456	0	.	.	none	.	PAQR9	57	.	NM_198504	exon1	c.G700T	p.D234Y	ACCAGTCGGTACG	.	PASS	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	37	12	25398262	25398262	+	Missense_Mutation	SNP	C	C	A	rs121913538		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	173.0	41.0	179.0	0.0	0.236994	0	.	.	weak	KRAS_ENST00000256078,colon,carcinoma,0,22	KRAS	30930	22	NM_004985	exon2	c.G57T	p.L19F	TATCGTCAAGGCA	.	PASS	Atlas-SNP
PPP1R3A	5506	hgsc.bcm.edu	37	7	113517882	113517882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	81.0	20.0	92.0	0.0	0.246914	0	.	.	none	PPP1R3A,caecum,carcinoma,+1,1	PPP1R3A	317	1	NM_002711	exon4	c.G3265A	p.V1089I	GGTAGACAGTTAT	.	PASS	Atlas-SNP
DIP2B	57609	hgsc.bcm.edu	37	12	51126265	51126265	+	Silent	SNP	G	G	A	novel		TCGA-VB-A8QN-01A-11D-A382-10	TCGA-VB-A8QN-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9f0d2750-df3a-4483-a914-016ced90bcfb	3bb2b474-51e0-48eb-b243-4ddd53fb1cda	46.0	6.0	57.0	0.0	0.130435	0	.	.	none	.	DIP2B	167	.	NM_173602	exon32	c.G3927A	p.P1309P	GTCCCCGCGGGCT	.	PASS	Atlas-SNP