Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
FLJ36000	0	genome.wustl.edu	37	17	21906421	21906421	+	RNA	SNP	C	C	G			TCGA-L5-A88Y-01A-11D-A351-09	TCGA-L5-A88Y-11A-11D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a7f776b7-6084-4cc7-9f51-d142e12da180	90570d8c-57d8-430a-bf1e-38b4365fc803	17	21906421	21906421	C	G	SNP	FLJ36000	ENST00000581223	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-744K17.9	Clone_based_vega_gene	ENSG00000266795	tier1	rs141759899	-	43	0	0.00	544	30	5.15
FUT5	0	genome.wustl.edu	37	19	5867696	5867696	+	Missense_Mutation	SNP	C	C	T			TCGA-L5-A88Y-01A-11D-A351-09	TCGA-L5-A88Y-11A-11D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a7f776b7-6084-4cc7-9f51-d142e12da180	90570d8c-57d8-430a-bf1e-38b4365fc803	19	5867696	5867696	C	T	SNP	FUT5	ENST00000252675	human	ensembl	74_37	-1	known	missense	c.41	p.R14H	0.030	NULL	pfam_Glyco_trans_10	-	no_errors	FUT5	HGNC	ENSG00000130383				8	0	0.00	77	7	8.33
PI4KAP1	0	genome.wustl.edu	37	22	20394526	20394526	+	RNA	SNP	C	C	T			TCGA-L5-A88Y-01A-11D-A351-09	TCGA-L5-A88Y-11A-11D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a7f776b7-6084-4cc7-9f51-d142e12da180	90570d8c-57d8-430a-bf1e-38b4365fc803	22	20394526	20394526	C	T	SNP	PI4KAP1	ENST00000416922	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PI4KAP1	HGNC	ENSG00000215513	tier1	rs201289136	-	56	0	0.00	302	40	11.66
SLC22A20	0	genome.wustl.edu	37	11	64981480	64981480	+	RNA	SNP	T	T	C			TCGA-L5-A88Y-01A-11D-A351-09	TCGA-L5-A88Y-11A-11D-A351-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a7f776b7-6084-4cc7-9f51-d142e12da180	90570d8c-57d8-430a-bf1e-38b4365fc803	11	64981480	64981480	T	C	SNP	SLC22A20	ENST00000525264	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.964	-	-	-	no_errors	SLC22A20	HGNC	ENSG00000197847				12	0	0.00	72	5	6.41
SOX9	0	genome.wustl.edu	37	17	70118950	70118950	+	Nonsense_Mutation	SNP	C	C	A			TCGA-L5-A88Y-01A-11D-A351-09	TCGA-L5-A88Y-11A-11D-A351-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a7f776b7-6084-4cc7-9f51-d142e12da180	90570d8c-57d8-430a-bf1e-38b4365fc803	17	70118950	70118950	C	A	SNP	SOX9	ENST00000245479	human	ensembl	74_37	+1	known	nonsense	c.522	p.Y174*	1.000	superfamily_HMG_box_dom,smart_HMG_box_dom	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX9	HGNC	ENSG00000125398	tier1	-	-	8	0	0.00	102	20	16.39