Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID ATAD3B 83858 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 1 1425803 1425803 + Missense_Mutation SNP C C T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c ZBTB40 9923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 1 22839532 22839532 + Silent SNP C C T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c SPATA5L1 79029 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 15 45707899 45707899 + Missense_Mutation SNP C C A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c ZNF609 23060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 15 64966530 64966530 + Missense_Mutation SNP G G A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c ZFHX3 463 hgsc.bcm.edu 37 16 72991713 72991715 + In_Frame_Del DEL CCA CCA - novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 CCA CCA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c CACNA1G 8913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 17 48653145 48653145 + Missense_Mutation SNP G G A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c TP53 7157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 17 7577114 7577114 + Missense_Mutation SNP C C T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c TMEM150B 284417 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 19 55824239 55824239 + Silent SNP C C T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c C19orf70 125988 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 19 5679701 5679701 + Missense_Mutation SNP C C A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c RNF103 7844 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 2 86831681 86831681 + Missense_Mutation SNP T T A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c DHX36 170506 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 3 154033067 154033067 + Missense_Mutation SNP T T A rs138481688 alternate_allele TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c NDUFB5 4711 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 3 179336311 179336311 + Splice_Site SNP T T C novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c MAGI1 9223 hgsc.bcm.edu 37 3 65425594 65425594 + Silent SNP C C T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c ANKRD17 26057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 4 73959889 73959889 + Missense_Mutation SNP C C A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c CXCL5 6374 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 4 74863781 74863781 + Missense_Mutation SNP G G T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c SEMA3C 10512 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 7 80458056 80458056 + Nonsense_Mutation SNP G G A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c ZNF789 285989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 7 99084964 99084964 + Silent SNP G G A rs148718204 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c GPSM1 26086 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 9 139231484 139231484 + Missense_Mutation SNP C C T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c AFF2 2334 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 X 147924508 147924508 + Missense_Mutation SNP C C T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c PIK3C2B 5287 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 1 204415184 204415184 + Missense_Mutation SNP C C T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c MIER3 166968 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 5 56229122 56229122 + Missense_Mutation SNP T T G novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c OR2B2 81697 hgsc.bcm.edu 37 6 27879249 27879249 + Silent SNP G G A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c OR8H2 390151 broad.mit.edu;mdanderson.org 37 11 55872537 55872537 + Missense_Mutation SNP A A G rs61746549 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c TAF1D 79101 broad.mit.edu 37 11 93471453 93471453 + Frame_Shift_Del DEL T T - novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c CASC5 57082 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 15 40944268 40944268 + Missense_Mutation SNP C C T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c CTU2 348180 broad.mit.edu 37 16 88781785 88781785 + Splice_Site DEL A A - novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c RNMT 8731 broad.mit.edu 37 18 13746253 13746253 + Frame_Shift_Del DEL A A - novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c RABL3 285282 broad.mit.edu 37 3 120417415 120417415 + Missense_Mutation SNP T T C novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c MUC4 4585 broad.mit.edu;mdanderson.org 37 3 195509308 195509308 + Missense_Mutation SNP G G A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c VCAN 1462 broad.mit.edu;ucsc.edu;mdanderson.org 37 5 82841438 82841438 + Silent SNP G G T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c OLFML2A 169611 broad.mit.edu 37 9 127572090 127572090 + Missense_Mutation SNP G G A rs201784600 TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c FBXW10 10517 ucsc.edu 37 17 18682505 18682505 + Missense_Mutation SNP T T C rs117160613 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c GPR146 115330 ucsc.edu 37 7 1097895 1097895 + Silent SNP A A G rs61910751 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c GREB1 9687 ucsc.edu 37 2 11775503 11775503 + Missense_Mutation SNP G G T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c PEBP1 5037 ucsc.edu 37 12 118574067 118574067 + Missense_Mutation SNP A A G novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c PIKFYVE 200576 ucsc.edu;bcgsc.ca 37 2 209198216 209198216 + Missense_Mutation SNP A A G novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c TRABD 80305 ucsc.edu 37 22 50636349 50636349 + Missense_Mutation SNP T T C novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c ANKRD30BL 554226 mdanderson.org 37 2 132919099 132919099 + RNA SNP C C T rs199974298 TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c DNAH14 127602 mdanderson.org;bcgsc.ca 37 1 225534219 225534219 + Missense_Mutation SNP T T C rs7527925 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c HLA-B 3106 mdanderson.org 37 6 31324046 31324046 + Missense_Mutation SNP C C T rs148450964 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c HLA-DRB5 3127 mdanderson.org 37 6 32497975 32497975 + Silent SNP A A G rs114195860 byfrequency;by1000genomes TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c MN1 4330 mdanderson.org 37 22 28194900 28194900 + Silent SNP T T C novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c MUC4 4585 mdanderson.org 37 3 195510758 195510758 + Missense_Mutation SNP C C T rs200554304 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c OR13G1 441933 mdanderson.org;bcgsc.ca 37 1 247835950 247835950 + Missense_Mutation SNP T T C rs1151640 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c UBTF 7343 mdanderson.org 37 17 42287519 42287519 + Silent SNP C C T rs2071167 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c LEPR 3953 bcgsc.ca 37 1 66058516 66058516 + Missense_Mutation SNP C C T novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c RPAP2 79871 bcgsc.ca 37 1 92799023 92799023 + Missense_Mutation SNP A A G novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c TCHH 7062 bcgsc.ca 37 1 152084663 152084663 + Missense_Mutation SNP C C G rs201434724 TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c TCHH 7062 bcgsc.ca 37 1 152084677 152084677 + Missense_Mutation SNP A A T rs199649490 TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c ZNF624 57547 bcgsc.ca 37 17 16527795 16527795 + Missense_Mutation SNP C C A rs8065506 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c FUT3 2525 bcgsc.ca 37 19 5843877 5843877 + Missense_Mutation SNP G G A rs28381969 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c OTOF 9381 bcgsc.ca 37 2 26698856 26698856 + Missense_Mutation SNP A A G novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c PECR 55825 bcgsc.ca 37 2 216923679 216923679 + Missense_Mutation SNP C C T rs1429148 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c EDEM2 55741 bcgsc.ca 37 20 33711701 33711701 + Missense_Mutation SNP A A G novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c MUC4 4585 bcgsc.ca 37 3 195511334 195511334 + Missense_Mutation SNP T T C novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c MUC4 4585 bcgsc.ca 37 3 195511925 195511925 + Missense_Mutation SNP A A G rs78031084 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c CNPY3 10695 bcgsc.ca 37 6 42906384 42906384 + Missense_Mutation SNP G G T rs9471969 byfrequency TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c CSMD3 114788 bcgsc.ca 37 8 113516067 113516067 + Missense_Mutation SNP G G A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c CYTB 0 bcgsc.ca 37 MT 15216 15216 + Missense_Mutation SNP G G A novel TCGA-KL-8338-01A-11D-2310-10 TCGA-KL-8338-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c e9966607-f842-41ec-8d4a-dff22bec65f6 511dfe93-0a8e-4ff1-8724-6f87ec952e5c