Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID ANKS1B 56899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 12 100377920 100377920 + Silent SNP G G A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 TRIM11 81559 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 1 228582602 228582602 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 ADAMTS7 11173 broad.mit.edu;hgsc.bcm.edu 37 15 79060504 79060504 + Frame_Shift_Del DEL C C - novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 TBC1D24 57465 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 16 2547069 2547069 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 SRRM2 23524 hgsc.bcm.edu 37 16 2819139 2819139 + Silent SNP C C T rs142230842 byfrequency TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 HOXB4 3214 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 46654334 46654334 + Missense_Mutation SNP T T A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 SGCA 6442 hgsc.bcm.edu 37 17 48245013 48245013 + Silent SNP C C T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 DOT1L 84444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 19 2207667 2207667 + Silent SNP C C T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 KALRN 8997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 3 124201729 124201729 + Missense_Mutation SNP A A T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 EPHB1 2047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 3 134873005 134873005 + Missense_Mutation SNP G G A rs183234182 by1000genomes TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 CRIPAK 285464 hgsc.bcm.edu 37 4 1389130 1389130 + Silent SNP G G A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 ASPN 54829 hgsc.bcm.edu 37 9 95237030 95237030 + Missense_Mutation SNP A A C rs143279922 TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 USP9X 8239 broad.mit.edu;hgsc.bcm.edu 37 X 41088984 41088985 + Frame_Shift_Ins INS - - A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 EEF1B2 1933 hgsc.bcm.edu 37 2 207027464 207027464 + Missense_Mutation SNP C C T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 CNR1 1268 hgsc.bcm.edu 37 6 88853866 88853866 + Silent SNP C C T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 PNISR 25957 broad.mit.edu;hgsc.bcm.edu;bcgsc.ca 37 6 99852539 99852539 + Missense_Mutation SNP C C T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 MST1L 11223 broad.mit.edu 37 1 17085780 17085780 + Silent SNP G G A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 PDZK1IP1 10158 broad.mit.edu 37 1 47653017 47653017 + Silent SNP G G A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 USH2A 7399 broad.mit.edu 37 1 216219788 216219788 + Missense_Mutation SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 CSGALNACT2 55454 broad.mit.edu 37 10 43659419 43659419 + Missense_Mutation SNP G G T rs79064394 TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 GPAM 57678 broad.mit.edu 37 10 113933564 113933564 + Missense_Mutation SNP G G T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 ATE1 11101 broad.mit.edu;bcgsc.ca 37 10 123596309 123596309 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 TH 7054 broad.mit.edu 37 11 2186902 2186902 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 TRIM49B 283116 broad.mit.edu 37 11 49056667 49056667 + Frame_Shift_Del DEL C C - novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 RSF1 51773 broad.mit.edu 37 11 77409663 77409663 + Missense_Mutation SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 A2M 2 broad.mit.edu 37 12 9242558 9242558 + Silent SNP C C T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 FNDC3A 22862 broad.mit.edu 37 13 49719943 49719943 + Silent SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 MYH6 4624 broad.mit.edu 37 14 23871766 23871766 + Missense_Mutation SNP C C A rs200260629 alternate_allele TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 C14orf1 11161 broad.mit.edu 37 14 76118234 76118234 + Splice_Site SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 KIAA0430 9665 broad.mit.edu 37 16 15718883 15718883 + Missense_Mutation SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 TRAPPC8 22878 broad.mit.edu;ucsc.edu;mdanderson.org 37 18 29511428 29511428 + Silent SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 MIER2 54531 broad.mit.edu 37 19 327253 327253 + Missense_Mutation SNP G G T rs200916519 TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 LRP3 4037 broad.mit.edu 37 19 33697008 33697008 + Silent SNP C C T rs201999025 TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 NBEAL1 65065 broad.mit.edu 37 2 204055051 204055051 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 COL4A3 1285 broad.mit.edu 37 2 228112294 228112294 + Silent SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 COPS8 10920 broad.mit.edu 37 2 238004481 238004481 + Silent SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 GPCPD1 56261 broad.mit.edu 37 20 5548180 5548180 + Missense_Mutation SNP T T A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 AZI2 64343 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 28365568 28365568 + Missense_Mutation SNP C C T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 ZFP62 643836 broad.mit.edu 37 5 180276230 180276230 + Silent SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 EHMT2 10919 broad.mit.edu;bcgsc.ca 37 6 31848574 31848574 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 CPNE5 57699 broad.mit.edu;ucsc.edu 37 6 36759870 36759870 + Silent SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 KIAA1324L 222223 broad.mit.edu 37 7 86542297 86542297 + Missense_Mutation SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 SHROOM4 57477 broad.mit.edu 37 X 50376364 50376364 + Silent SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 PASD1 139135 broad.mit.edu 37 X 150791421 150791421 + Missense_Mutation SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 ATP2B3 492 broad.mit.edu 37 X 152823628 152823628 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 ENAH 55740 broad.mit.edu 37 1 225702514 225702515 + Frame_Shift_Ins INS - - G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 PPP2R1B 5519 broad.mit.edu 37 11 111637006 111637007 + Frame_Shift_Ins INS - - C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 URGCP 55665 broad.mit.edu 37 7 43917145 43917146 + Frame_Shift_Ins INS - - C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 DECR2 26063 ucsc.edu 37 16 461365 461365 + Silent SNP C C T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 DOCK2 1794 ucsc.edu 37 5 169504838 169504838 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 HRNR 388697 ucsc.edu 37 1 152186042 152186042 + Missense_Mutation SNP A A G rs12751022 byfrequency TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 IRX3 79191 ucsc.edu 37 16 54318841 54318841 + Missense_Mutation SNP C C A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 KIAA1462 57608 ucsc.edu 37 10 30317404 30317404 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 KIF19 124602 ucsc.edu 37 17 72339295 72339295 + Missense_Mutation SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 LCMT2 9836 ucsc.edu 37 15 43622621 43622621 + Missense_Mutation SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 SLC1A4 6509 ucsc.edu 37 2 65217143 65217143 + Silent SNP C C A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 SLC23A3 151295 ucsc.edu 37 2 220030023 220030023 + Silent SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 TMEM132A 54972 ucsc.edu 37 11 60701218 60701218 + Splice_Site SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 UNC5B 219699 ucsc.edu 37 10 73044593 73044593 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 ZC3HAV1 56829 ucsc.edu 37 7 138794049 138794049 + Missense_Mutation SNP A A G novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 CLEC18A 348174 mdanderson.org 37 16 69988260 69988260 + Silent SNP G G A rs74456876 TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 HLA-C 3107 mdanderson.org 37 6 31238009 31238009 + Silent SNP T T C rs1131014 byfrequency TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 ICAM5 7087 mdanderson.org 37 19 10407169 10407169 + Silent SNP G G C rs710845 byfrequency TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 KRTAP9-9 81870 mdanderson.org 37 17 39412093 39412093 + Silent SNP C C A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 MUC16 94025 mdanderson.org 37 19 8999479 8999479 + Missense_Mutation SNP G G T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 MUC6 4588 mdanderson.org 37 11 1017022 1017022 + Missense_Mutation SNP G G A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 MUC6 4588 mdanderson.org 37 11 1017543 1017543 + Missense_Mutation SNP G G A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 MUC6 4588 mdanderson.org 37 11 1017979 1017979 + Missense_Mutation SNP G G A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 OR5H1 26341 mdanderson.org 37 3 97851892 97851892 + Silent SNP G G A rs5009897 TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 PCDHA8 56140 mdanderson.org 37 5 140221195 140221195 + Missense_Mutation SNP G G C rs61730626 byfrequency TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 PRKRA 8575 mdanderson.org 37 2 179315757 179315757 + Missense_Mutation SNP T T G rs9406386 byfrequency TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 SLCO1C1 53919 mdanderson.org 37 12 20905250 20905250 + Missense_Mutation SNP C C T rs6487138 byfrequency TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 TAS2R30 259293 mdanderson.org 37 12 11286276 11286276 + Missense_Mutation SNP G G C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 UCHL1 7345 mdanderson.org 37 4 41259633 41259633 + Missense_Mutation SNP C C A rs5030732 TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 MUC6 4588 bcgsc.ca 37 11 1016628 1016628 + Missense_Mutation SNP G G A rs202039948 TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 MUC6 4588 bcgsc.ca 37 11 1016662 1016662 + Missense_Mutation SNP G G A rs201489806 TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 ADAMTS7 11173 bcgsc.ca 37 15 79060505 79060505 + Frame_Shift_Del DEL C C - novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 LYRM1 57149 bcgsc.ca 37 16 20926885 20926885 + Missense_Mutation SNP C C T novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 NFAT5 10725 bcgsc.ca 37 16 69724942 69724942 + Missense_Mutation SNP T T C novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 MPHOSPH10 10199 bcgsc.ca 37 2 71357850 71357850 + Missense_Mutation SNP G G A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 HLA-DQA1 3117 bcgsc.ca 37 6 32609173 32609173 + Missense_Mutation SNP C C G rs10093 bycluster;byfrequency;by1000genomes TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 USP9X 8239 bcgsc.ca 37 X 41088985 41088986 + Frame_Shift_Ins INS - - A novel TCGA-KL-8334-01A-11D-2310-10 TCGA-KL-8334-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091 94434272-4cbd-4b4d-bd98-44f18526dd69 dd7bfe59-20ee-4f8c-8a95-8eb1d0846091