Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID VAV3 10451 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 108303461 108303461 + Missense_Mutation SNP C C T rs139065569 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff METTL15 196074 broad.mit.edu;hgsc.bcm.edu 37 11 28232627 28232627 + Frame_Shift_Del DEL T T - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ATAD3C 219293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 1 1391260 1391260 + Silent SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SCT 6343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 11 626499 626499 + Missense_Mutation SNP G G T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff RASAL1 8437 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 12 113543595 113543595 + Missense_Mutation SNP G G A rs149732792 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff PDZRN4 29951 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 12 41967467 41967467 + Missense_Mutation SNP C C A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff KRT1 3848 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 12 53073958 53073958 + Missense_Mutation SNP C C G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff PABPN1 8106 hgsc.bcm.edu 37 14 23790864 23790864 + Silent SNP G G A rs188436762 by1000genomes TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ADCY4 196883 hgsc.bcm.edu;mdanderson.org 37 14 24788628 24788628 + Silent SNP G G T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SGK494 0 hgsc.bcm.edu;ucsc.edu 37 17 26941165 26941165 + Missense_Mutation SNP G G C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff RNF167 26001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 17 4845935 4845935 + Missense_Mutation SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff TP53 7157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 17 7577094 7577094 + Missense_Mutation SNP G G A rs28934574 bycluster TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff USP14 9097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 18 211193 211193 + Missense_Mutation SNP G G T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SERPINB8 5271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 18 61654433 61654433 + Missense_Mutation SNP C C A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff PVRL2 5819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 19 45368669 45368669 + Missense_Mutation SNP C C T rs111808500 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff NOVA2 4858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 19 46443970 46443970 + Silent SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ZNF845 91664 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 19 53856300 53856300 + Missense_Mutation SNP C C A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff KCNF1 3754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 2 11053758 11053758 + Silent SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff HES6 55502 hgsc.bcm.edu;ucsc.edu 37 2 239147555 239147555 + Silent SNP A A G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff PRSS45 377047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 3 46784475 46784475 + Missense_Mutation SNP G G T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff AMIGO3 386724 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 3 49755708 49755708 + Silent SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff PDZRN3 23024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 3 73657758 73657758 + Silent SNP C C G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff KCTD8 386617 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 44177218 44177218 + Missense_Mutation SNP T T G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff LOX 4015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 5 121413160 121413160 + Missense_Mutation SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff NEUROG1 4762 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 5 134871070 134871070 + Missense_Mutation SNP C C A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff CMYA5 202333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 5 79039710 79039710 + Missense_Mutation SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SLC18B1 116843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 6 133105219 133105219 + Missense_Mutation SNP C C G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ASB15 142685 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 7 123254584 123254584 + Missense_Mutation SNP G G C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FUBP3 8939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 9 133507382 133507382 + Missense_Mutation SNP A A G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SRGN 5552 broad.mit.edu;hgsc.bcm.edu;bcgsc.ca 37 10 70863802 70863802 + Missense_Mutation SNP T T C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff CDK11B 984 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 1 1647844 1647844 + Silent SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff CACNA1C 775 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 12 2794921 2794921 + Missense_Mutation SNP G G A rs71458011 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SCN10A 6336 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 3 38739683 38739683 + Silent SNP G G T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ROBO1 6091 hgsc.bcm.edu;ucsc.edu 37 3 78735005 78735005 + Silent SNP G G A rs80267939 by1000genomes TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff RBMXL1 494115 broad.mit.edu;mdanderson.org 37 1 89449440 89449440 + Missense_Mutation SNP G G T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff OR10J5 127385 broad.mit.edu 37 1 159504971 159504971 + Missense_Mutation SNP G G A rs149096656 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ANKRD2 26287 broad.mit.edu;mdanderson.org;bcgsc.ca 37 10 99342111 99342111 + Nonsense_Mutation SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff LUZP2 338645 broad.mit.edu 37 11 24936024 24936024 + Frame_Shift_Del DEL A A - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff CCDC73 493860 broad.mit.edu 37 11 32637520 32637520 + Frame_Shift_Del DEL T T - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff MED21 9412 broad.mit.edu;mdanderson.org;bcgsc.ca 37 12 27179446 27179446 + Missense_Mutation SNP C C A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff DIAPH3 81624 broad.mit.edu;mdanderson.org;bcgsc.ca 37 13 60240728 60240728 + Missense_Mutation SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff CD276 80381 broad.mit.edu;mdanderson.org 37 15 73996604 73996604 + Missense_Mutation SNP G G A rs150186392 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff IL32 9235 broad.mit.edu 37 16 3119142 3119142 + Missense_Mutation SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff KIAA0753 9851 broad.mit.edu;ucsc.edu;mdanderson.org 37 17 6515464 6515464 + Silent SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff LINC00674 100499466 broad.mit.edu 37 17 66122126 66122126 + RNA DEL T T - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff APCDD1 147495 broad.mit.edu;mdanderson.org 37 18 10485688 10485688 + Missense_Mutation SNP A A G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff HS6ST1 9394 broad.mit.edu;mdanderson.org 37 2 129025737 129025737 + Missense_Mutation SNP T T A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff RUFY4 285180 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 2 218940146 218940146 + Missense_Mutation SNP G G C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff NIPSNAP1 8508 broad.mit.edu;mdanderson.org;bcgsc.ca 37 22 29956774 29956774 + Missense_Mutation SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff EOMES 8320 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 27763289 27763289 + Missense_Mutation SNP T T C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FAM194A 131831 broad.mit.edu 37 3 150421548 150421548 + Silent SNP T T C rs146394127 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff KCTD8 386617 broad.mit.edu 37 4 44177044 44177044 + Frame_Shift_Del DEL T T - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff CLOCK 9575 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 4 56319289 56319289 + Nonsense_Mutation SNP C C A rs1056478 alternate_allele TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FSTL5 56884 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 4 162697068 162697068 + Missense_Mutation SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FSTL4 23105 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 5 132534972 132534972 + Missense_Mutation SNP C C A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff DIAPH1 1729 broad.mit.edu 37 5 140907261 140907261 + Frame_Shift_Del DEL G G - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff HIST1H2BO 8348 broad.mit.edu;mdanderson.org;bcgsc.ca 37 6 27861260 27861260 + Missense_Mutation SNP C C G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff WBSCR17 64409 broad.mit.edu 37 7 70880909 70880909 + Missense_Mutation SNP C C A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ARHGEF5 7984 broad.mit.edu 37 7 144062428 144062428 + Frame_Shift_Del DEL T T - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff MTMR9 66036 broad.mit.edu 37 8 11162509 11162509 + Frame_Shift_Del DEL A A - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff CPNE3 8895 broad.mit.edu 37 8 87558847 87558847 + Frame_Shift_Del DEL A A - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff KCNQ3 3786 broad.mit.edu;ucsc.edu;mdanderson.org 37 8 133141626 133141626 + Silent SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff PHF20L1 51105 broad.mit.edu;mdanderson.org 37 8 133851655 133851655 + Missense_Mutation SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff COL22A1 169044 broad.mit.edu;ucsc.edu;mdanderson.org 37 8 139674282 139674282 + Silent SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff DOCK8 81704 broad.mit.edu 37 9 405015 405015 + Frame_Shift_Del DEL T T - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff GNA14 9630 broad.mit.edu 37 9 80049325 80049325 + Silent SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SPATA31D3 389762 broad.mit.edu;mdanderson.org 37 9 84562780 84562780 + Missense_Mutation SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff HEMGN 55363 broad.mit.edu;mdanderson.org 37 9 100693400 100693400 + Missense_Mutation SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff MUC5B 727897 broad.mit.edu 37 11 1264078 1264079 + Frame_Shift_Ins INS - - C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff GTPBP5 26164 broad.mit.edu 37 20 60774224 60774225 + Frame_Shift_Ins INS - - C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff PLXND1 23129 broad.mit.edu 37 3 129290413 129290414 + Frame_Shift_Ins INS - - C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FAM46A 55603 ucsc.edu 37 6 82461832 82461832 + Silent SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FUT11 170384 ucsc.edu;bcgsc.ca 37 10 75532602 75532602 + Missense_Mutation SNP T T C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff GDPD3 79153 ucsc.edu;bcgsc.ca 37 16 30122776 30122776 + Missense_Mutation SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff HSPG2 3339 ucsc.edu 37 1 22211304 22211304 + Missense_Mutation SNP A A G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff OR2T27 403239 ucsc.edu 37 1 248813292 248813292 + Silent SNP T T C rs71199329 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff PNPLA7 375775 ucsc.edu;mdanderson.org;bcgsc.ca 37 9 140409846 140409846 + Missense_Mutation SNP G G C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff TM9SF3 56889 ucsc.edu 37 10 98307653 98307653 + Silent SNP T T C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff WDR72 256764 ucsc.edu;mdanderson.org;bcgsc.ca 37 15 53908269 53908269 + Missense_Mutation SNP C C A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ADAM21 8747 mdanderson.org 37 14 70924294 70924294 + Silent SNP C C T rs61738695 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff CD1A 909 mdanderson.org 37 1 158226667 158226667 + Silent SNP C C T rs1042388 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff COL6A5 256076 mdanderson.org 37 3 130113788 130113788 + Silent SNP A A G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff DDX11 1663 mdanderson.org 37 12 31244665 31244665 + Missense_Mutation SNP C C T rs71447578 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FAM83D 81610 mdanderson.org 37 20 37555116 37555116 + Missense_Mutation SNP G G C rs3752290 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FCGBP 8857 mdanderson.org 37 19 40376927 40376927 + Missense_Mutation SNP G G A rs146581881 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FKBP4 2288 mdanderson.org;bcgsc.ca 37 12 2907983 2907983 + Missense_Mutation SNP A A G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FMNL1 752 mdanderson.org 37 17 43319770 43319770 + Silent SNP C C T rs1801353 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff FUT3 2525 mdanderson.org 37 19 5843877 5843877 + Missense_Mutation SNP G G A rs28381969 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff GNAQ 2776 mdanderson.org 37 9 80537095 80537095 + Nonsense_Mutation SNP G G T rs200106152 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff GNB2 2783 mdanderson.org 37 7 100276355 100276355 + Silent SNP C C T rs17850902 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff GOLGA8EP 390535 mdanderson.org 37 15 23441131 23441131 + RNA SNP C C A rs75452183 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff HS6ST1 9394 mdanderson.org 37 2 129025758 129025758 + Missense_Mutation SNP C C A rs142919429 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff HTRA3 94031 mdanderson.org 37 4 8294059 8294059 + Silent SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff KRTAP5-5 439915 mdanderson.org 37 11 1651412 1651412 + Silent SNP G G C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff LILRA2 11027 mdanderson.org 37 19 55086949 55086949 + Silent SNP A A G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff MUC4 4585 mdanderson.org 37 3 195506387 195506387 + Missense_Mutation SNP G G T rs201542091 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff MUC4 4585 mdanderson.org 37 3 195508057 195508057 + Missense_Mutation SNP G G A rs199527570 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff MUC4 4585 mdanderson.org 37 3 195509080 195509080 + Missense_Mutation SNP G G C rs200289412 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff MUC4 4585 mdanderson.org 37 3 195509606 195509606 + Missense_Mutation SNP C C T rs200244334 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff MUC4 4585 mdanderson.org 37 3 195511238 195511238 + Missense_Mutation SNP C C T rs3103956 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff MUC4 4585 mdanderson.org 37 3 195511910 195511910 + Missense_Mutation SNP C C T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff NR3C1 2908 mdanderson.org 37 5 142779662 142779662 + Missense_Mutation SNP A A G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff OPN4 94233 mdanderson.org;bcgsc.ca 37 10 88423471 88423471 + Missense_Mutation SNP G G T novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff OR5M1 390168 mdanderson.org 37 11 56380811 56380811 + Silent SNP T T C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff OR8H2 390151 mdanderson.org 37 11 55872876 55872876 + Missense_Mutation SNP C C T rs2512961 byfrequency TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SDHA 6389 mdanderson.org 37 5 236642 236642 + Missense_Mutation SNP G G A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SIGLEC5 8778 mdanderson.org 37 19 52132741 52132741 + Silent SNP G G A rs4802834 bycluster;byfrequency;by2hit2allele TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SPCS1 28972 mdanderson.org 37 3 52741725 52741725 + Missense_Mutation SNP T T C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff TCERG1 10915 mdanderson.org 37 5 145838659 145838659 + Silent SNP C C T rs111965890 byfrequency;by1000genomes TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ZNF208 7757 mdanderson.org 37 19 22156850 22156850 + Missense_Mutation SNP A A G rs199858837 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ZNF208 7757 mdanderson.org 37 19 22156855 22156855 + Silent SNP G G A rs200969060 TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ZNF329 79673 mdanderson.org;bcgsc.ca 37 19 58639916 58639916 + Nonsense_Mutation SNP C C A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ZNF845 91664 mdanderson.org 37 19 53856761 53856761 + Missense_Mutation SNP T T C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff TEDDM1 127670 bcgsc.ca 37 1 182368966 182368966 + Missense_Mutation SNP A A G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff METTL15 196074 bcgsc.ca 37 11 28232628 28232628 + Frame_Shift_Del DEL T T - novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff AASDHPPT 60496 bcgsc.ca 37 11 105950206 105950206 + Missense_Mutation SNP A A G novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff HYLS1 219844 bcgsc.ca 37 11 125770068 125770068 + Missense_Mutation SNP G G C novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff ZMYM5 9205 bcgsc.ca 37 13 20426145 20426145 + Missense_Mutation SNP T T A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff SI 6476 bcgsc.ca 37 3 164776870 164776870 + Missense_Mutation SNP C C A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff GNAQ 2776 bcgsc.ca 37 9 80537112 80537112 + Missense_Mutation SNP T T A novel TCGA-KL-8339-01A-11D-2310-10 TCGA-KL-8339-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff 88432832-7a50-48df-90d5-3a5b7e1f5595 cbaafe8b-1636-4107-aa92-de83895cabff