Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID KRTAP5-4 387267 hgsc.bcm.edu 37 11 1643255 1643255 + Silent SNP G G A novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 VWCE 220001 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 11 61026257 61026257 + Missense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 RBM19 9904 hgsc.bcm.edu;ucsc.edu 37 12 114261040 114261040 + Missense_Mutation SNP G G T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 FOXO1 2308 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 13 41134356 41134356 + Nonsense_Mutation SNP A A T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 DDX24 57062 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 14 94524209 94524209 + Missense_Mutation SNP C C A novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 KIAA0430 9665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 16 15695994 15695994 + Missense_Mutation SNP C C A novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 PKD1L2 114780 hgsc.bcm.edu;bcgsc.ca 37 16 81213360 81213360 + Missense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 KCNJ18 100134444 hgsc.bcm.edu 37 17 21318691 21318692 + Frame_Shift_Del DEL GT GT - novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 GLP2R 9340 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 9763353 9763353 + Missense_Mutation SNP C C T rs145296340 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 DSCAM 1826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 21 42080523 42080523 + Missense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 NUDT9 53343 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 4 88379168 88379168 + Silent SNP T T C novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 TCERG1 10915 hgsc.bcm.edu 37 5 145838641 145838641 + Silent SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 CELF2 10659 hgsc.bcm.edu 37 10 11207550 11207550 + Missense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MAML2 84441 hgsc.bcm.edu 37 11 95825362 95825362 + Silent SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 H2AFZ 3015 broad.mit.edu;hgsc.bcm.edu;bcgsc.ca 37 4 100870503 100870503 + Missense_Mutation SNP G G T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 AHNAK 79026 broad.mit.edu 37 11 62294617 62294617 + Silent SNP C C T rs143003772 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 SMCO2 0 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 12 27654933 27654933 + Missense_Mutation SNP G G T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 TPTE2P3 220115 broad.mit.edu 37 13 53151292 53151293 + RNA DNP AG AG CA rs61957307 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 WHAMMP2 440253 broad.mit.edu 37 15 28991148 28991148 + RNA SNP G G C rs200178304 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 SLC24A1 9187 broad.mit.edu 37 15 65916547 65916547 + Silent SNP A A G novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 CSK 1445 broad.mit.edu 37 15 75093415 75093415 + Missense_Mutation SNP T T C novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 CLEC17A 388512 broad.mit.edu 37 19 14710546 14710548 + In_Frame_Del DEL CTA CTA - novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 CTA CTA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 BIRC6 57448 broad.mit.edu;mdanderson.org 37 2 32694461 32694461 + Splice_Site SNP A A G novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 CTNNA2 1496 broad.mit.edu;mdanderson.org 37 2 80816475 80816475 + Missense_Mutation SNP A A T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 CLTCL1 8218 broad.mit.edu;bcgsc.ca 37 22 19203748 19203748 + Missense_Mutation SNP A A G novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 SCARF2 91179 broad.mit.edu 37 22 20791941 20791943 + In_Frame_Del DEL AGC AGC - novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 AGC AGC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 PKDREJ 10343 broad.mit.edu 37 22 46653502 46653502 + Nonsense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 RBMS3 27303 broad.mit.edu;bcgsc.ca 37 3 29628650 29628650 + Missense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 RAD54L2 23132 broad.mit.edu 37 3 51690165 51690165 + Nonsense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 DGKQ 1609 broad.mit.edu 37 4 961063 961063 + Silent SNP G G A novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 UGT2B10 7365 broad.mit.edu 37 4 69870669 69870669 + Missense_Mutation SNP C C A novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 TRIM4 89122 broad.mit.edu 37 7 99514382 99514382 + Silent SNP G G A novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 KPTN 11133 broad.mit.edu 37 19 47987306 47987307 + Frame_Shift_Ins INS - - C novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 POM121C 100101267 broad.mit.edu 37 7 75055685 75055686 + Frame_Shift_Ins INS - - CC novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 DEFB132 400830 ucsc.edu 37 20 238438 238438 + Missense_Mutation SNP G G C rs79204234 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 DEFB132 400830 ucsc.edu 37 20 238441 238441 + Silent SNP T T C rs74636637 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 EXOC8 149371 ucsc.edu;bcgsc.ca 37 1 231473244 231473244 + Missense_Mutation SNP T T C novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 HEXIM1 10614 ucsc.edu 37 17 43226939 43226939 + Missense_Mutation SNP A A G novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 KCNK16 83795 ucsc.edu;bcgsc.ca 37 6 39290273 39290273 + Missense_Mutation SNP A A G novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MLL2 8085 ucsc.edu;mdanderson.org;bcgsc.ca 37 12 49436390 49436390 + Missense_Mutation SNP T T C novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 PDCD11 22984 ucsc.edu 37 10 105160258 105160258 + Silent SNP A A G novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 RNF181 51255 ucsc.edu 37 2 85823695 85823695 + Missense_Mutation SNP A A G novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 ANKRD20A5P 440482 mdanderson.org 37 18 14183680 14183680 + RNA SNP G G A rs75090388 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 CACNA1A 773 mdanderson.org 37 19 13319693 13319693 + Silent SNP A A G rs16051 bycluster;byfrequency;byhapmap;by1000genomes TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 COQ7 10229 mdanderson.org;bcgsc.ca 37 16 19085298 19085298 + Missense_Mutation SNP C C T rs11074359 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 CR1 1378 mdanderson.org 37 1 207787831 207787831 + Nonsense_Mutation SNP G G T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 EEF1D 1936 mdanderson.org 37 8 144671244 144671244 + Silent SNP C C A rs4874160 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 FRG1B 284802 mdanderson.org 37 20 29625905 29625905 + RNA SNP T T C novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 FRG1 2483 mdanderson.org 37 4 190874235 190874235 + Missense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 KLB 152831 mdanderson.org 37 4 39448542 39448542 + Silent SNP C C G rs7685429 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 KLF14 136259 mdanderson.org 37 7 130418525 130418525 + Silent SNP G G A rs76603546 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 KRTAP10-10 353333 mdanderson.org 37 21 46058034 46058034 + Missense_Mutation SNP G G A rs1785472 by2hit2allele TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 KRTAP4-11 653240 mdanderson.org 37 17 39274157 39274157 + Silent SNP G G A rs76095941 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 LIPE 3991 mdanderson.org 37 19 42905986 42905986 + Missense_Mutation SNP C C A novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MLL3 58508 mdanderson.org 37 7 151962290 151962290 + Missense_Mutation SNP C C G novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MUC21 394263 mdanderson.org 37 6 30955089 30955089 + Missense_Mutation SNP G G C rs79399059 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MUC21 394263 mdanderson.org 37 6 30955119 30955119 + Silent SNP A A T rs55918804 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MUC4 4585 mdanderson.org 37 3 195505787 195505787 + Missense_Mutation SNP C C T rs11915935 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MUC4 4585 mdanderson.org 37 3 195505844 195505844 + Missense_Mutation SNP T T A novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MUC4 4585 mdanderson.org 37 3 195505886 195505886 + Missense_Mutation SNP C C G novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MUC4 4585 mdanderson.org 37 3 195509832 195509832 + Silent SNP C C T rs199909366 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MUC4 4585 mdanderson.org 37 3 195509843 195509843 + Missense_Mutation SNP C C T rs200739317 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MUC4 4585 mdanderson.org 37 3 195512483 195512483 + Missense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MUC4 4585 mdanderson.org 37 3 195513780 195513780 + Silent SNP G G A novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 PIK3C3 5289 mdanderson.org;bcgsc.ca 37 18 39607490 39607490 + Missense_Mutation SNP G G T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 PRSS1 5644 mdanderson.org 37 7 142460779 142460779 + Missense_Mutation SNP G G T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 SIRPB1 10326 mdanderson.org 37 20 1592120 1592120 + Missense_Mutation SNP G G T rs1135201 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 SIRT6 51548 mdanderson.org 37 19 4174859 4174859 + Missense_Mutation SNP C C T rs74317014 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 TSEN54 283989 mdanderson.org 37 17 73518328 73518328 + Missense_Mutation SNP A A C rs77247739 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 TTC16 158248 mdanderson.org 37 9 130487157 130487157 + Missense_Mutation SNP T T G rs77630455 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 TUBB8 347688 mdanderson.org 37 10 94006 94006 + Missense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 ZNF658 26149 mdanderson.org 37 9 40775035 40775035 + Silent SNP C C T rs62561230 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 VWA5B1 127731 bcgsc.ca 37 1 20680718 20680718 + Missense_Mutation SNP G G A rs2072751 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 DZIP1 22873 bcgsc.ca 37 13 96293631 96293631 + Missense_Mutation SNP G G A rs9561921 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 CES5A 221223 bcgsc.ca 37 16 55883563 55883563 + Missense_Mutation SNP A A G novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 DNAH17 8632 bcgsc.ca 37 17 76455172 76455172 + Missense_Mutation SNP C C T novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 ANKRD30BL 554226 bcgsc.ca 37 2 132905706 132905706 + RNA SNP A A G rs142209162 TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 FAM182A 284800 bcgsc.ca 37 20 26061967 26061967 + RNA SNP G G T rs200610416 byfrequency TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 MRPS12 6183 bcgsc.ca 37 19 39423174 39423175 + Frame_Shift_Ins INS - - GGCTCAGCACTGGCCGCGA novel TCGA-KM-8440-01A-11D-2310-10 TCGA-KM-8440-10A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186 cdf313c8-59f9-41c6-9bd2-f47cb4287da5 f6d8bf61-9da3-4ce4-b6cc-e1391c0c0186