Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AATK 9625 broad.mit.edu;hgsc.bcm.edu 37 17 79098648 79098648 + Missense_Mutation SNP C C T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ADAM21 8747 broad.mit.edu;hgsc.bcm.edu 37 14 70925009 70925009 + Missense_Mutation SNP A A T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d AFTPH 54812 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 64779884 64779884 + Missense_Mutation SNP G G C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ARID1A 8289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27099852 27099852 + Missense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ATR 545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142168328 142168328 + Frame_Shift_Del DEL T T - novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d BAT4 0 broad.mit.edu;ucsc.edu 37 6 31632107 31632107 + Missense_Mutation SNP T C C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d BCAR1 9564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 75276901 75276901 + Nonsense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d BCAR1 9564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 75276902 75276902 + Silent SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d BCORL1 63035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129148444 129148444 + Missense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d C13orf39 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103343225 103343226 + Frame_Shift_Ins INS - - A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d C1orf168 199920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 57258476 57258476 + Nonsense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d C3orf32 0 hgsc.bcm.edu 37 3 8675505 8675506 + Frame_Shift_Ins INS - - G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d C5orf13 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 111071196 111071196 + Nonsense_Mutation SNP G G T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d CA10 56934 broad.mit.edu;hgsc.bcm.edu 37 17 49726541 49726541 + Splice_Site SNP A A G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d CCNA1 8900 hgsc.bcm.edu 37 13 37012869 37012873 + Frame_Shift_Del DEL AGGTT AGGTT - novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 AGGTT AGGTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d CEP164 22897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117280582 117280582 + Missense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d CHPT1 56994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 102107933 102107933 + Silent SNP T T A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d CNBP 7555 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128890023 128890023 + Silent SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d COL5A2 1290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 189914113 189914113 + Missense_Mutation SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d CPSF1 29894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145623927 145623927 + Missense_Mutation SNP T T A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d DEPDC1(dist=1181286) 0 broad.mit.edu;hgsc.bcm.edu 37 1 70144085 70144085 + IGR SNP A A G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d DLEC1 9940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38163910 38163910 + Silent SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d DNAH17 8632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76482488 76482488 + Missense_Mutation SNP G G T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d EIF4E 1977 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99823113 99823113 + Missense_Mutation SNP A A T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d FAM166A 401565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140139965 140139965 + Missense_Mutation SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d FAM18B2 0 broad.mit.edu;hgsc.bcm.edu 37 17 15449215 15449215 + Missense_Mutation SNP T T A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d FLG 2312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152279938 152279938 + Missense_Mutation SNP C C G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d FLRT2 23768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 86089641 86089641 + Nonsense_Mutation SNP A A T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d GCNT3 9245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59910566 59910566 + Silent SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d GRIN3B 116444 broad.mit.edu;ucsc.edu 37 19 1004979 1004979 + Silent SNP C T T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d HERC1 8925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63915942 63915942 + Silent SNP G G T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d HLA-DPB1 3115 hgsc.bcm.edu 37 6 33054014 33054014 + Frame_Shift_Del DEL A A - rs142167543 bycluster;by1000genomes TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d HNRNPCL1 343069 broad.mit.edu;hgsc.bcm.edu 37 1 12907356 12907356 + Missense_Mutation SNP C C T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ILDR1 286676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 121724198 121724198 + Missense_Mutation SNP T T A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d IPO13 9670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44425962 44425962 + Silent SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ITGB4 3691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73745083 73745083 + Silent SNP C C T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ITIH5L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54785300 54785300 + Missense_Mutation SNP C C T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d KIAA0368 23392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 114134741 114134741 + Nonsense_Mutation SNP A A T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d KIAA1267 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 44127972 44127981 + Frame_Shift_Del DEL GTGAATTTCG GTGAATTTCG - novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 GTGAATTTCG GTGAATTTCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d LHX2 9355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 126783560 126783560 + Missense_Mutation SNP G G T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d MAST4 375449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66462356 66462356 + Missense_Mutation SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d MEI1 150365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42180387 42180387 + Silent SNP T T C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d MYOF 26509 broad.mit.edu;hgsc.bcm.edu 37 10 95093560 95093560 + Silent SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d NFE2L2 4780 broad.mit.edu;hgsc.bcm.edu 37 2 178097099 178097099 + Intron SNP A A G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d NPAS1 4861 broad.mit.edu;ucsc.edu 37 19 47539306 47539306 + Missense_Mutation SNP C A A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d NR1H3 10062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 47289515 47289515 + Missense_Mutation SNP A A C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d OIT3 170392 hgsc.bcm.edu 37 10 74684103 74684103 + Nonsense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d OR52N2 390077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5841740 5841740 + Silent SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d P2RY11 5032 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10225224 10225224 + Missense_Mutation SNP T T C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d P2RY13 53829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 151045862 151045862 + Missense_Mutation SNP G G T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d PCGF5 84333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93011143 93011144 + Frame_Shift_Del DEL TA TA - novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 TA TA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d PDE11A 50940 hgsc.bcm.edu 37 2 178576587 178576587 + Missense_Mutation SNP A A T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d PGK1 5230 broad.mit.edu;hgsc.bcm.edu 37 X 77380396 77380396 + Missense_Mutation SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d PGLYRP3 114771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153274993 153274993 + Missense_Mutation SNP A A G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A A G A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d POLR3H 171568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 41926704 41926704 + Frame_Shift_Del DEL G G - novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d PPFIA1 8500 broad.mit.edu;ucsc.edu 37 11 70184559 70184559 + Missense_Mutation SNP G A A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d PRMT7 54496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68386205 68386205 + Frame_Shift_Del DEL A A - novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d PTGDS 5730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139873535 139873535 + Missense_Mutation SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d PTK2 5747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141727751 141727751 + Missense_Mutation SNP T T A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d RAB3D 9545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11436252 11436252 + Missense_Mutation SNP A A T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d RCOR2 283248 broad.mit.edu;hgsc.bcm.edu 37 11 63679957 63679957 + Silent SNP C C T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d RGS19 10287 hgsc.bcm.edu 37 20 62707927 62707928 + Frame_Shift_Ins INS - - G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d RSPO4 343637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 948634 948634 + Missense_Mutation SNP C C G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SEC16A 9919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139369264 139369264 + Missense_Mutation SNP T T C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SIM1 6492 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 100841464 100841464 + Missense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SLC13A4 26266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 135370277 135370277 + Missense_Mutation SNP C C T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SLC33A1 9197 broad.mit.edu;hgsc.bcm.edu 37 3 155546088 155546088 + Nonsense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SLC7A8 23428 broad.mit.edu;hgsc.bcm.edu 37 14 23597394 23597394 + Silent SNP C C G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SLC9A4 389015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 103095413 103095413 + Silent SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SOLH 6650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 596909 596909 + Missense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SORL1 6653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 121437700 121437700 + Missense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SPIRE2 84501 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89929985 89929985 + Missense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SYT15 83849 hgsc.bcm.edu;ucsc.edu 37 10 46967610 46967611 + Frame_Shift_Ins INS - - C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d TCAP 8557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37821618 37821618 + Silent SNP T T A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d TMCO4 255104 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20009748 20009748 + Missense_Mutation SNP C C G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d TMEM132A 54972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60701064 60701064 + Silent SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d TNKS1BP1 85456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57077336 57077336 + Frame_Shift_Del DEL T T - novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d TPTE2 93492 broad.mit.edu;hgsc.bcm.edu 37 13 19999143 19999143 + Nonsense_Mutation SNP G G C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d TST 7263 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 37414210 37414210 + Missense_Mutation SNP G G C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d TTC22 55001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55251692 55251692 + Silent SNP T T C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179582323 179582323 + Silent SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d TTN 7273 hgsc.bcm.edu 37 2 179633434 179633435 + Frame_Shift_Ins INS - - C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d TXLNA 200081 hgsc.bcm.edu;ucsc.edu 37 1 32660776 32660776 + Missense_Mutation SNP C C T rs77692511 bycluster;byfrequency;by1000genomes TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d UHRF1BP1 54887 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 34789455 34789455 + Nonsense_Mutation SNP A A T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d WDR47 22911 broad.mit.edu;hgsc.bcm.edu 37 1 109554267 109554267 + Missense_Mutation SNP T T C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d WDR90 197335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 700616 700616 + Missense_Mutation SNP C C G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d XKR7 343702 broad.mit.edu;hgsc.bcm.edu 37 20 30556225 30556225 + Missense_Mutation SNP C C G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d XPO5 57510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43515440 43515440 + Silent SNP G G A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ZCCHC5 203430 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 77913051 77913051 + Missense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ZDHHC8 29801 hgsc.bcm.edu 37 22 20130989 20130990 + Frame_Shift_Ins INS - - G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ZNF714 148206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 21300402 21300402 + Missense_Mutation SNP C C A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ZNF749 388567 broad.mit.edu;hgsc.bcm.edu 37 19 57955937 57955937 + Missense_Mutation SNP A A G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d ATP8B5P 158381 broad.mit.edu 37 9 35449946 35449946 + RNA SNP G C C novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d FMN1 342184 broad.mit.edu 37 15 33358779 33358779 + Missense_Mutation SNP T G G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d GGN 199720 broad.mit.edu 37 19 38876474 38876474 + Silent SNP C T T rs183192050 by1000genomes TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d KIF19 124602 broad.mit.edu 37 17 72343936 72343936 + Silent SNP C T T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d MAGEB16 139604 broad.mit.edu 37 X 35821205 35821205 + Missense_Mutation SNP C A A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d OFD1 8481 broad.mit.edu 37 X 13776512 13776512 + Missense_Mutation SNP G T T novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d PBRM1 55193 broad.mit.edu 37 3 52649373 52649373 + Nonsense_Mutation SNP T A A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d PGAM1 5223 broad.mit.edu 37 10 99186086 99186086 + Missense_Mutation SNP C G G novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d SYTL4 94121 broad.mit.edu 37 X 99941139 99941139 + Missense_Mutation SNP G A A novel TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d Unknown 0 broad.mit.edu 37 15 82620366 82620366 + RNA SNP C T T rs75981106 TCGA-A3-3320-01A-01D-0966-08 TCGA-A3-3320-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5c4cc718-d7b5-453c-89d8-186ab0869e68 94726a4b-14cf-4592-b63c-22a8f994631d