Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID BICD1 636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32490734 32490734 + Missense_Mutation SNP G G A novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 CACNA1F 778 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 49072841 49072841 + Splice_Site SNP C C T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 DAZAP1 26528 hgsc.bcm.edu 37 19 1432568 1432569 + Frame_Shift_Ins INS - - C novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 ETHE1 23474 hgsc.bcm.edu 37 19 44030464 44030465 + Frame_Shift_Ins INS - - G novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 FAM153A 285596 broad.mit.edu;hgsc.bcm.edu 37 5 177166139 177166139 + Splice_Site SNP C C A novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 FMR1 2332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 147014114 147014114 + Missense_Mutation SNP G G T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 GPR148 344561 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 131486857 131486857 + Missense_Mutation SNP C C T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 IL4R 3566 broad.mit.edu;hgsc.bcm.edu 37 16 27367167 27367167 + Missense_Mutation SNP G G A novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 MECP2 4204 broad.mit.edu;ucsc.edu 37 X 153296886 153296886 + Silent SNP G C C rs61748385 TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 MOCS3 27304 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 49576093 49576093 + Silent SNP C C T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 NCOA3 8202 hgsc.bcm.edu 37 20 46279866 46279866 + Silent SNP A A G rs28529067 bycluster;byfrequency;by1000genomes TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 OR13C8 138802 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 107332250 107332250 + Missense_Mutation SNP G G T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 OR2F2 135948 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 143633180 143633180 + Silent SNP G G A novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 OR51L1 119682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5020987 5020987 + Missense_Mutation SNP G G A novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 OR52E8 390079 broad.mit.edu;hgsc.bcm.edu 37 11 5878479 5878479 + Missense_Mutation SNP C C T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 PRDM2 7799 hgsc.bcm.edu 37 1 14105142 14105142 + Missense_Mutation SNP T T A rs151133690 byfrequency TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 SLC38A10 124565 hgsc.bcm.edu 37 17 79225074 79225075 + Frame_Shift_Ins INS - - T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 STAG1 10274 broad.mit.edu;ucsc.edu 37 3 136062774 136062774 + Nonsense_Mutation SNP G A A novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 SULT1A2 6799 broad.mit.edu;hgsc.bcm.edu 37 16 28607132 28607132 + Silent SNP G G A novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 TAAR5 9038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 132910004 132910004 + Silent SNP G G T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 TAF7L 54457 hgsc.bcm.edu 37 X 100531461 100531461 + Missense_Mutation SNP A A C novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 TRPC4AP 26133 broad.mit.edu;ucsc.edu 37 20 33596526 33596526 + Missense_Mutation SNP C G G novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188197 10188197 + Splice_Site SNP G G T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G G T G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 AHDC1 27245 broad.mit.edu 37 1 27874970 27874970 + Nonsense_Mutation SNP C T T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 AMN 81693 broad.mit.edu 37 14 103396005 103396005 + Frame_Shift_Del DEL G - - novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 MYO10 4651 broad.mit.edu 37 5 16675008 16675008 + Missense_Mutation SNP G T T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 NME2P1 283458 broad.mit.edu 37 12 120720306 120720306 + RNA SNP C T T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 RAB22A 57403 broad.mit.edu 37 20 56886167 56886167 + Missense_Mutation SNP C A A novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 TBC1D3P2 440452 broad.mit.edu 37 17 60347011 60347011 + Silent SNP A G G novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 TBC1D3P2 440452 broad.mit.edu 37 17 60347013 60347013 + Missense_Mutation SNP G A A novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 Unknown 0 broad.mit.edu 37 11 74034364 74034364 + RNA DEL A - - novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 Unknown 0 broad.mit.edu 37 X 155252868 155252868 + Silent SNP T A A rs1128420 TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 WNT5B 81029 broad.mit.edu 37 12 1755046 1755046 + Silent SNP C T T novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94 STAG2 10735 broad.mit.edu 37 X 123191777 123191777 + Missense_Mutation SNP C G G novel TCGA-B0-4700-01A-02D-1534-10 TCGA-B0-4700-11A-01D-1534-10 C C C G C C Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx 32cb433f-359c-44c3-b2df-d2a64df90175 19aa82fd-3e4f-4313-bd96-53da79284a94