Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA12 26154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215818763 215818763 + Silent SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 ADAM10 102 broad.mit.edu;ucsc.edu 37 15 58938360 58938360 + Missense_Mutation SNP C T T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 ADAMTS20 80070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 43771275 43771275 + Missense_Mutation SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32673959 32673959 + Silent SNP C C A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 BMS1 9790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 43292488 43292488 + Missense_Mutation SNP C C T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 C11orf30 56946 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 76256949 76256949 + Missense_Mutation SNP C C G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 C6orf57 135154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 71289120 71289120 + Missense_Mutation SNP C C T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 CARD6 84674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 40852478 40852478 + Silent SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 CCNB2 9133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59409521 59409521 + Missense_Mutation SNP C C T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 CGNL1 84952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57816796 57816796 + Missense_Mutation SNP G G T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 CIAPIN1 57019 hgsc.bcm.edu 37 16 57468040 57468041 + Frame_Shift_Ins INS - - TACA novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 CSGALNACT1 55790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 19297429 19297429 + Nonsense_Mutation SNP C C A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113358405 113358405 + Silent SNP C C A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 16911671 16911671 + Missense_Mutation SNP C C G rs148491916 alternate_allele TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 DACT1 51339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59112841 59112841 + Silent SNP C C T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 DARS 1615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 136678172 136678172 + Splice_Site SNP T T C novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 DHRS4 10901 broad.mit.edu;hgsc.bcm.edu 37 14 24424292 24424292 + Silent SNP G G T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 DLAT 1737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111915861 111915861 + Splice_Site SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 DLAT 1737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111915865 111915865 + Missense_Mutation SNP C C G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 DSG3 1830 broad.mit.edu;ucsc.edu 37 18 29046612 29046612 + Missense_Mutation SNP G T T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 EIF2AK1 27102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 6094303 6094303 + Missense_Mutation SNP T T C novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 ERCC6 2074 hgsc.bcm.edu 37 10 50732231 50732231 + Silent SNP C C T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 ERCC6 2074 hgsc.bcm.edu;ucsc.edu 37 10 50732227 50732227 + Frame_Shift_Del DEL C C - novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 EXOSC9 5393 hgsc.bcm.edu;ucsc.edu 37 4 122731151 122731151 + Frame_Shift_Del DEL G G - novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 FSIP2 401024 broad.mit.edu;hgsc.bcm.edu 37 2 186669998 186669998 + Missense_Mutation SNP A A T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 G6PC 2538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41052960 41052960 + Missense_Mutation SNP T T A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 GIPC3 126326 broad.mit.edu;hgsc.bcm.edu 37 19 3586520 3586520 + Nonsense_Mutation SNP A A T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 GRIA1 2890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153077687 153077687 + Missense_Mutation SNP C C A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 HDAC9 9734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 18688092 18688092 + Missense_Mutation SNP G G T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186056587 186056587 + Missense_Mutation SNP T T G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T T G T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 HSD17B11 51170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 88303419 88303419 + Silent SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 IRS1 3667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 227660084 227660084 + Missense_Mutation SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 KCNJ15 3772 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 39671523 39671523 + Missense_Mutation SNP C C G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 LBX2 85474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74725150 74725150 + Silent SNP C C T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 LCLAT1 253558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 30785088 30785088 + Missense_Mutation SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 MYH13 8735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10225010 10225010 + Nonsense_Mutation SNP C C A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 NAV1 89796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201779747 201779747 + Missense_Mutation SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 NRAP 4892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 115356916 115356916 + Missense_Mutation SNP T T G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 OPHN1 4983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 67273543 67273543 + Silent SNP C C T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 PARP1 142 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 226551746 226551746 + Missense_Mutation SNP A A G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52637692 52637694 + In_Frame_Del DEL ATT ATT - novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 ATT ATT ATT - ATT ATT Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 PDE12 201626 hgsc.bcm.edu 37 3 57542940 57542940 + Silent SNP T T C novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 PDE12 201626 hgsc.bcm.edu;ucsc.edu 37 3 57542938 57542938 + Frame_Shift_Del DEL A A - novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 PPM1E 22843 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57058007 57058007 + Missense_Mutation SNP C C T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 RAB37 326624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72739479 72739479 + Missense_Mutation SNP G G T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160264133 160264133 + Missense_Mutation SNP G G C novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 RNASE11 122651 hgsc.bcm.edu;ucsc.edu 37 14 21052170 21052170 + Frame_Shift_Del DEL T T - novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 RND1 27289 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49251928 49251928 + Missense_Mutation SNP A A T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 SCYL2 55681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 100704845 100704845 + Silent SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 SDSL 113675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113865886 113865886 + Silent SNP T T A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 SH2B1 25970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 28878735 28878735 + Missense_Mutation SNP G G T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 SLC16A8 23539 broad.mit.edu;hgsc.bcm.edu 37 22 38476983 38476983 + Silent SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 TGM5 9333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43525807 43525807 + Missense_Mutation SNP C C G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 TRIM46 80128 hgsc.bcm.edu 37 1 155150596 155150597 + Frame_Shift_Ins INS - - G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 TYK2 7297 broad.mit.edu;hgsc.bcm.edu 37 19 10475698 10475698 + Silent SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 UBN1 29855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4924865 4924865 + Silent SNP G G A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 VWF 7450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6127762 6127762 + Missense_Mutation SNP T T C novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 XRN2 22803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 21336744 21336744 + Missense_Mutation SNP G G C novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 ZC3H3 23144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 144620458 144620458 + Missense_Mutation SNP T T G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 ZKSCAN1 7586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99631582 99631582 + Missense_Mutation SNP G G T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 ZNF215 7762 broad.mit.edu;ucsc.edu 37 11 6977426 6977426 + Silent SNP C A A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 ALPP 250 broad.mit.edu 37 2 233246013 233246013 + Nonsense_Mutation SNP C A A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 ANKRD20A3 441425 broad.mit.edu 37 9 67938633 67938633 + Missense_Mutation SNP G T T novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 GOLGA6L5 374650 broad.mit.edu 37 15 85055754 85055756 + RNA DEL CTC - - novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 CTC CTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 HCG4 54435 broad.mit.edu 37 6 29760353 29760373 + RNA DEL GCGGGCGCCGTGGATGGAGCA - - rs140982245 bycluster;by1000genomes TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 GCGGGCGCCGTGGATGGAGCA GCGGGCGCCGTGGATGGAGCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 KRTAP4-1 85285 broad.mit.edu 37 17 39340475 39340477 + Splice_Site DEL TGC - - rs5820392 bycluster;by1000genomes TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 TGC TGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 MMP28 79148 broad.mit.edu 37 17 34093633 34093633 + Silent SNP G A A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 PSMC1 5700 broad.mit.edu 37 14 90730104 90730104 + Silent SNP T G G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 SLC17A9 63910 broad.mit.edu 37 20 61594983 61594983 + Missense_Mutation SNP T A A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 SPDYE7P 441251 broad.mit.edu 37 7 72333538 72333538 + RNA SNP G A A rs146152373 by1000genomes TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 TFAP2C 7022 broad.mit.edu 37 20 55206674 55206674 + Missense_Mutation SNP C A A novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 TSEN54 283989 broad.mit.edu 37 17 73518055 73518055 + Missense_Mutation SNP T G G novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031 Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel TCGA-B0-5104-01A-01D-1421-08 TCGA-B0-5104-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c93a5a8-8c37-4295-b566-cb15edd464a4 d7121c44-3327-411d-a772-ce8d49e3c031