Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC9 10060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 22068794 22068794 + Silent SNP G G T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 ACTL8 81569 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 18149661 18149661 + Missense_Mutation SNP T T C novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 ADAM33 80332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3655259 3655259 + Silent SNP G G A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 ALDH2 217 broad.mit.edu;hgsc.bcm.edu 37 12 112221085 112221085 + Missense_Mutation SNP G G A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 ARSI 340075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149677720 149677720 + Frame_Shift_Del DEL C C - novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 ASNSD1 54529 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 190532647 190532647 + Missense_Mutation SNP T T A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 ATP13A5 344905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 193052840 193052840 + Missense_Mutation SNP G G C novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 B4GALNT3 283358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 657232 657232 + Silent SNP G G A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 BCAM 4059 broad.mit.edu;hgsc.bcm.edu 37 19 45324077 45324077 + Missense_Mutation SNP G G A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 BCLAF1 9774 hgsc.bcm.edu 37 6 136599885 136599885 + Missense_Mutation SNP C C A rs150873394 bycluster;byfrequency;by1000genomes TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 C5orf44 80006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64960063 64960063 + Missense_Mutation SNP G G A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 C5orf44 80006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 64960070 64960070 + Missense_Mutation SNP G G T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 CABIN1 23523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 24563174 24563174 + Missense_Mutation SNP C C A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 CD207 50489 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71060814 71060814 + Silent SNP G G C novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 CLEC4C 170482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7890118 7890118 + Missense_Mutation SNP A A T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 COL11A1 1301 broad.mit.edu;ucsc.edu 37 1 103404625 103404625 + Missense_Mutation SNP C T T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 DIP2C 22982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 375379 375379 + Silent SNP G G T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 FAM111B 374393 hgsc.bcm.edu 37 11 58892377 58892377 + Frame_Shift_Del DEL A A - novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 FAM5C 339479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 190067353 190067353 + Missense_Mutation SNP G G T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 FBN3 84467 hgsc.bcm.edu;ucsc.edu 37 19 8148162 8148162 + Silent SNP G G A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 FGFR4 2264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 176520705 176520705 + Missense_Mutation SNP G G T rs141384037 alternate_allele TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 FZD4 8322 hgsc.bcm.edu;ucsc.edu 37 11 86663464 86663464 + Missense_Mutation SNP T T C novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 GCN1L1 10985 broad.mit.edu;ucsc.edu 37 12 120574466 120574466 + Missense_Mutation SNP G A A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 IFI27L2 83982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94594972 94594972 + Missense_Mutation SNP C C A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 IL1F10 84639 hgsc.bcm.edu 37 2 113832829 113832829 + Missense_Mutation SNP C C A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 MEX3C 51320 hgsc.bcm.edu;ucsc.edu 37 18 48703023 48703023 + Frame_Shift_Del DEL C C - novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 NOL8 55035 hgsc.bcm.edu;ucsc.edu 37 9 95070141 95070141 + RNA SNP G G A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 OR52J3 119679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5068523 5068523 + Silent SNP A A T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52668817 52668817 + Nonsense_Mutation SNP C C A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 PCYOX1L 78991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 148742273 148742273 + Missense_Mutation SNP G G C novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 PDK3 5165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 24537120 24537120 + Missense_Mutation SNP A A C novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 PDS5B 23047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33275559 33275559 + Missense_Mutation SNP G G A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 PGK1 5230 broad.mit.edu;hgsc.bcm.edu 37 X 77373615 77373615 + Missense_Mutation SNP T T A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 PTPN14 5784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214549669 214549669 + Missense_Mutation SNP C C T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 ROS1 6098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 117647553 117647553 + Silent SNP C C T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47164613 47164613 + Nonsense_Mutation SNP C C A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 SETD6 79918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58550759 58550759 + Missense_Mutation SNP C C G novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 SGSM3 27352 hgsc.bcm.edu 37 22 40804077 40804078 + Frame_Shift_Ins INS - - G novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 STAT1 6772 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 191864399 191864399 + Missense_Mutation SNP T T G novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 SYVN1 84447 hgsc.bcm.edu 37 11 64897535 64897536 + Frame_Shift_Ins INS - - C novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 TAF5 6877 broad.mit.edu;hgsc.bcm.edu 37 10 105139365 105139365 + Missense_Mutation SNP G G C novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 TLN2 83660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 62978977 62978977 + Silent SNP A A G novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 ULBP2 80328 broad.mit.edu;hgsc.bcm.edu 37 6 150267506 150267506 + Splice_Site SNP A A G novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 VHL 7428 hgsc.bcm.edu 37 3 10183864 10183864 + Missense_Mutation SNP C C G novel TCGA-B0-5399-01A-01W-1528-10 TCGA-B0-5399-10A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS PacBio . . Illumina MiSeq 83a76d98-c12a-4fe5-b3a3-9d74a3ae5179 ccca4bdb-ecc3-478a-ab84-47822fc05435 XCL1 6375 broad.mit.edu;hgsc.bcm.edu 37 1 168550370 168550370 + Missense_Mutation SNP G G A novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 XCL1 6375 broad.mit.edu;hgsc.bcm.edu 37 1 168550371 168550371 + Missense_Mutation SNP G G C novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 ELFN1 392617 broad.mit.edu 37 7 1785687 1785688 + Frame_Shift_Del DEL GG - - novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 IGSF22 283284 broad.mit.edu 37 11 18738394 18738394 + Missense_Mutation SNP G T T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 KCNE1L 23630 broad.mit.edu 37 X 108868069 108868069 + Missense_Mutation SNP G T T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 LOC340094 340094 broad.mit.edu 37 5 5057795 5057795 + RNA DEL T - - novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 LOC647121 0 broad.mit.edu 37 1 121306707 121306707 + Silent SNP C T T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 SAMD5 389432 broad.mit.edu 37 6 147830411 147830411 + Frame_Shift_Del DEL C - - novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 SETD2 29072 broad.mit.edu 37 3 47127737 47127737 + Nonsense_Mutation SNP C T T novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 Unknown 0 broad.mit.edu 37 12 92119 92119 + Missense_Mutation SNP T C C novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 Unknown 0 broad.mit.edu 37 3 127199650 127199650 + RNA DEL G - - novel TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 Unknown 0 broad.mit.edu 37 9 66466004 66466005 + RNA INS - A A rs71272522 bycluster;byfrequency TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435 Unknown 0 broad.mit.edu 37 9 68414556 68414556 + RNA SNP G T T rs145693434 TCGA-B0-5399-01A-01D-1501-10 TCGA-B0-5399-10A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 0961a0cf-cc48-4648-899a-6bae189713be ccca4bdb-ecc3-478a-ab84-47822fc05435