Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA12 26154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 215880269 215880269 + Missense_Mutation SNP T T C novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea ACTN4 81 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39216363 39216363 + Splice_Site SNP G G A novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea ALDOB 229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104187311 104187312 + Frame_Shift_Ins INS - - A novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea AMBRA1 55626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46567203 46567203 + Missense_Mutation SNP G G A novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea C14orf1 11161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 76118207 76118207 + Missense_Mutation SNP A A T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea COL5A2 1290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 189962055 189962055 + Missense_Mutation SNP C C T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea ELOVL5 60481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 53135507 53135507 + Missense_Mutation SNP T T C novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea FAM13A 10144 hgsc.bcm.edu;ucsc.edu 37 4 89912229 89912229 + Frame_Shift_Del DEL A A - novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea FOXD4L4 349334 hgsc.bcm.edu 37 9 70427685 70427685 + Frame_Shift_Del DEL G G - rs59364037 TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea GPR75 10936 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 54081819 54081819 + Missense_Mutation SNP G G C novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea IPP 3652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46212019 46212019 + Missense_Mutation SNP A A T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea KHDRBS2 202559 broad.mit.edu;ucsc.edu 37 6 62604655 62604655 + Missense_Mutation SNP G T T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea KIAA0284 0 hgsc.bcm.edu 37 14 105352885 105352890 + In_Frame_Del DEL GCAGGA GCAGGA - rs150426191 bycluster;by1000genomes TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 GCAGGA GCAGGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea KIAA0947 23379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 5462477 5462477 + Silent SNP G G T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea LATS2 26524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 21557681 21557681 + Nonsense_Mutation SNP C C A novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea LGALS14 56891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40199946 40199946 + Missense_Mutation SNP G G A novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea LIPE 3991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42910438 42910438 + Missense_Mutation SNP T T A novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea MCM3AP 8888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47663535 47663535 + Missense_Mutation SNP G G T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea MEFV 4210 broad.mit.edu;ucsc.edu 37 16 3293876 3293876 + Silent SNP G A A rs104895161 TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea MEP1B 4225 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 29788192 29788192 + Missense_Mutation SNP A A T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea MYO5B 4645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47438527 47438527 + Missense_Mutation SNP A A C novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea NPL 80896 hgsc.bcm.edu;ucsc.edu 37 1 182794926 182794926 + Frame_Shift_Del DEL A A - novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea OR10C1 442194 broad.mit.edu;hgsc.bcm.edu 37 6 29407843 29407843 + Silent SNP C C T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea OR2AG1 144125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6806283 6806283 + Missense_Mutation SNP C C A novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea PAPL 390928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39597629 39597629 + Missense_Mutation SNP C C T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643898 52643898 + Nonsense_Mutation SNP A A T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A A T A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea PEAK1 79834 hgsc.bcm.edu 37 15 77471485 77471485 + Missense_Mutation SNP A A C novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea PEAK1 79834 hgsc.bcm.edu;ucsc.edu 37 15 77471481 77471481 + Frame_Shift_Del DEL T T - novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea RNMT 8731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 13737037 13737037 + Missense_Mutation SNP G G T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea SFRS15 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 33067196 33067196 + Missense_Mutation SNP G G A novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea SMC5 23137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 72892386 72892386 + Nonsense_Mutation SNP C C T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea SYNJ2 8871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 158495714 158495714 + Missense_Mutation SNP G G T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191527 10191527 + Frame_Shift_Del DEL A A - novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea KRTAP4-11 653240 broad.mit.edu 37 17 39274291 39274291 + Missense_Mutation SNP T C C novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea MST1P2 11209 broad.mit.edu 37 1 16974224 16974224 + RNA SNP C G G rs61769737 TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea NAB2 4665 broad.mit.edu 37 12 57485457 57485457 + Silent SNP T C C novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea SPEN 23013 broad.mit.edu 37 1 16258574 16258574 + Missense_Mutation SNP A C C novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea Unknown 0 broad.mit.edu 37 10 30987274 30987274 + Missense_Mutation SNP C T T novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea Unknown 0 broad.mit.edu 37 14 36841025 36841025 + Missense_Mutation SNP G A A novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel TCGA-B0-5711-01A-11D-1669-08 TCGA-B0-5711-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cf09ae91-5523-494c-8f30-c26f6ba37624 bf8e0bcb-ce02-4b84-bd83-f34a5a14f4ea