Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AKR7L 246181 hgsc.bcm.edu 37 1 19595194 19595194 + Missense_Mutation SNP A A G rs75616155 bycluster;byfrequency;by1000genomes TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de ATAD3C 219293 hgsc.bcm.edu 37 1 1403814 1403814 + Silent SNP C C T rs146537972 by1000genomes TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de ATP2C2 9914 hgsc.bcm.edu 37 16 84495698 84495698 + Silent SNP G G C novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de C10orf79 0 hgsc.bcm.edu;ucsc.edu 37 10 105893489 105893489 + Silent SNP T T C novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de C3orf72 401089 hgsc.bcm.edu 37 3 138669387 138669387 + Silent SNP C C T novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de CDK4 1019 hgsc.bcm.edu;ucsc.edu 37 12 58144726 58144726 + Missense_Mutation SNP G G C novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de CHRNA4 1137 hgsc.bcm.edu 37 20 61987735 61987735 + Silent SNP T T C novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de DMBX1 127343 hgsc.bcm.edu 37 1 46976717 46976717 + Silent SNP C C T rs12045245 bycluster;byfrequency;by1000genomes TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de EHD2 30846 hgsc.bcm.edu 37 19 48239721 48239721 + Silent SNP C C A rs141588825 alternate_allele TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de EIF4G1 1981 hgsc.bcm.edu 37 3 184041029 184041029 + Silent SNP G G T novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de GATA3 2625 hgsc.bcm.edu;ucsc.edu 37 10 8115905 8115905 + Silent SNP C C T novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de IL1RAPL2 26280 hgsc.bcm.edu;ucsc.edu 37 X 104961395 104961395 + Missense_Mutation SNP G G A novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de IWS1 55677 hgsc.bcm.edu 37 2 128262648 128262648 + Silent SNP T T C novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de JAK2 3717 hgsc.bcm.edu 37 9 5072549 5072549 + Missense_Mutation SNP G G T novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de KIF21A 55605 hgsc.bcm.edu 37 12 39695437 39695437 + Silent SNP C C A novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de LDB3 11155 hgsc.bcm.edu 37 10 88476148 88476148 + Silent SNP C C A novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de LOXHD1 125336 hgsc.bcm.edu 37 18 44104808 44104808 + Missense_Mutation SNP T T G novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de MAML1 9794 hgsc.bcm.edu 37 5 179201298 179201298 + Missense_Mutation SNP C C T rs61753466 bycluster;byfrequency;by1000genomes TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de MOCS1 4337 hgsc.bcm.edu 37 6 39895231 39895231 + Missense_Mutation SNP G G T novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de PHKA2 5256 hgsc.bcm.edu 37 X 18926100 18926100 + Missense_Mutation SNP C C T novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de PLEKHG4B 153478 hgsc.bcm.edu 37 5 155056 155056 + Missense_Mutation SNP C C A novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de PPARGC1A 10891 hgsc.bcm.edu;ucsc.edu 37 4 23886513 23886513 + Missense_Mutation SNP A A C novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de PTPRU 10076 hgsc.bcm.edu 37 1 29618536 29618536 + Missense_Mutation SNP G G T novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de SETD2 29072 hgsc.bcm.edu;ucsc.edu 37 3 47079155 47079155 + Splice_Site SNP C C G novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C C G C C Unknown Valid Somatic Phase_I WXS 454 SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de SLC13A2 9058 hgsc.bcm.edu 37 17 26817926 26817926 + Splice_Site SNP T T G novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de SLC35B2 347734 hgsc.bcm.edu 37 6 44223195 44223195 + Missense_Mutation SNP T T C novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de SPZ1 84654 hgsc.bcm.edu;ucsc.edu 37 5 79616716 79616716 + Missense_Mutation SNP G G C novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de TET1 80312 hgsc.bcm.edu 37 10 70450818 70450818 + Silent SNP A A G novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de TMC4 147798 hgsc.bcm.edu 37 19 54675643 54675643 + Missense_Mutation SNP G G A rs77215230 bycluster;byfrequency;by1000genomes TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de TRAPPC10 7109 hgsc.bcm.edu;ucsc.edu 37 21 45502925 45502925 + Silent SNP G G A novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de TRHR 7201 hgsc.bcm.edu 37 8 110100374 110100374 + Nonsense_Mutation SNP T T A novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de TRPM1 4308 hgsc.bcm.edu;ucsc.edu 37 15 31355418 31355418 + Silent SNP G G A novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de VENTX 27287 hgsc.bcm.edu 37 10 135053527 135053527 + Missense_Mutation SNP C C T rs150065198 byfrequency TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de VPS13D 55187 hgsc.bcm.edu;ucsc.edu 37 1 12403073 12403073 + Silent SNP C C T novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de ZNF365 22891 hgsc.bcm.edu;ucsc.edu 37 10 64159446 64159446 + Missense_Mutation SNP C C G novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de ZP1 22917 hgsc.bcm.edu 37 11 60637829 60637829 + Missense_Mutation SNP G G A novel TCGA-BP-4343-01A-02D-1366-10 TCGA-BP-4343-11A-01D-1366-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID 7195f58b-26ad-4015-af27-07f1c578b3ab 488a3842-7fc6-401c-b901-2cae0e89a9de