Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ALDH16A1 126133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 49972161 49972161 + Missense_Mutation SNP T T A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ARFGEF2 10564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47605030 47605030 + Frame_Shift_Del DEL A A - novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ARFGEF2 10564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47605033 47605057 + Frame_Shift_Del DEL AAATAAAATGACGAAAGAGCAGTAT AAATAAAATGACGAAAGAGCAGTAT - novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 AAATAAAATGACGAAAGAGCAGTAT AAATAAAATGACGAAAGAGCAGTAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ARFGEF2 10564 broad.mit.edu;ucsc.edu 37 20 47605027 47605027 + Splice_Site DEL G - - novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ARFGEF2 10564 hgsc.bcm.edu 37 20 47605035 47605035 + Missense_Mutation SNP A A T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ARFGEF2 10564 hgsc.bcm.edu 37 20 47605057 47605057 + Nonsense_Mutation SNP T T A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 C10orf18 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5800947 5800947 + Missense_Mutation SNP A A T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 C14orf37 145407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58563699 58563699 + Missense_Mutation SNP T T C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 C5 727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123745015 123745015 + Missense_Mutation SNP G G A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 CD180 4064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66478939 66478939 + Missense_Mutation SNP G G T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 CYP4F2 8529 broad.mit.edu;hgsc.bcm.edu 37 19 15989682 15989682 + Missense_Mutation SNP G G A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 DMRT2 10655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 1056689 1056689 + Missense_Mutation SNP C C G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 DYSF 8291 broad.mit.edu;ucsc.edu 37 2 71738941 71738941 + Missense_Mutation SNP C G G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 EYS 346007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 65655781 65655781 + Missense_Mutation SNP A A C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 FREM1 158326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 14748599 14748599 + Missense_Mutation SNP G G T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 GPR15 2838 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 98251797 98251797 + Missense_Mutation SNP G G T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 GRIN2B 2904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 13761600 13761600 + Missense_Mutation SNP G G T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 IL28B 0 broad.mit.edu;hgsc.bcm.edu 37 19 39735134 39735134 + Missense_Mutation SNP C C T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 KLHL7 55975 broad.mit.edu;ucsc.edu 37 7 23207478 23207478 + Missense_Mutation SNP G A A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 LOXHD1 125336 broad.mit.edu;ucsc.edu 37 18 44098173 44098173 + Missense_Mutation SNP C T T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MICA 100507436 hgsc.bcm.edu 37 6 31380161 31380161 + Frame_Shift_Del DEL G G - rs147667828 by1000genomes TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MKI67IP 84365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 122488643 122488643 + Silent SNP G G A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MTUS2 23281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 30062042 30062042 + Missense_Mutation SNP A A T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9047434 9047434 + Silent SNP A A G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9074345 9074345 + Silent SNP T T C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 NAALADL1 10004 broad.mit.edu;hgsc.bcm.edu 37 11 64822097 64822097 + Silent SNP C C A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 NCF1 653361 broad.mit.edu;hgsc.bcm.edu 37 7 74191683 74191683 + Missense_Mutation SNP A A G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 OR10G7 390265 broad.mit.edu;hgsc.bcm.edu 37 11 123909632 123909632 + Missense_Mutation SNP A A T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 OR1S1 219959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57982325 57982325 + Missense_Mutation SNP C C A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 OR2AG1 144125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 6806389 6806389 + Missense_Mutation SNP A A G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 OR2T4 127074 broad.mit.edu;hgsc.bcm.edu 37 1 248525734 248525734 + Silent SNP T T C rs138844789 TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 OR4A5 81318 broad.mit.edu;hgsc.bcm.edu 37 11 51412339 51412339 + Silent SNP A A T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 PCDHA10 56139 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140236094 140236094 + Missense_Mutation SNP A A G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 PCDHGB7 56099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140798186 140798186 + Missense_Mutation SNP G G C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 PDE8A 5151 broad.mit.edu;hgsc.bcm.edu 37 15 85659326 85659326 + Missense_Mutation SNP A A T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 PLEC 5339 broad.mit.edu;hgsc.bcm.edu 37 8 144992443 144992443 + Missense_Mutation SNP G G T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 RAB6B 51560 broad.mit.edu;ucsc.edu 37 3 133558406 133558406 + Missense_Mutation SNP C G G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 RB1 5925 broad.mit.edu;hgsc.bcm.edu 37 13 49030485 49030485 + Missense_Mutation SNP G G A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 RPGRIP1 57096 broad.mit.edu;ucsc.edu 37 14 21793025 21793025 + Missense_Mutation SNP G T T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 SERPINA3 12 broad.mit.edu;hgsc.bcm.edu 37 14 95080851 95080851 + Missense_Mutation SNP C C A rs144060757 alternate_allele TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 SERPINB13 5275 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 61255920 61255920 + Missense_Mutation SNP G G A rs139825462 TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 SLC12A9 56996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100463346 100463346 + Missense_Mutation SNP A A C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 SMARCAL1 50485 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 217285020 217285020 + Splice_Site SNP A A T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 SPEM1 374768 broad.mit.edu;ucsc.edu 37 17 7324820 7324820 + Missense_Mutation SNP C T T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 SRBD1 55133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 45620107 45620107 + Missense_Mutation SNP G G T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 STAR 6770 broad.mit.edu;hgsc.bcm.edu 37 8 38001871 38001871 + Missense_Mutation SNP G G T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 SYNE1 23345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 152809562 152809562 + Missense_Mutation SNP A A G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 TBC1D2 55357 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 100963824 100963824 + Silent SNP C C T rs145936813 byfrequency TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 TEKT5 146279 broad.mit.edu;ucsc.edu 37 16 10788637 10788637 + Missense_Mutation SNP T C C rs145065368 TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 TIMM17B 10245 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48751506 48751506 + Missense_Mutation SNP T T C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 TNR 7143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 175323627 175323627 + Silent SNP A A T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7577498 7577498 + Splice_Site SNP C C A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ULK3 25989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75134629 75134629 + Missense_Mutation SNP C C G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 VPRBP 9730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51455599 51455599 + Silent SNP A A C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 WNK4 65266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40945664 40945664 + Missense_Mutation SNP C C T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ZNF141 7700 broad.mit.edu;hgsc.bcm.edu 37 4 367075 367075 + Silent SNP C C T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ZNF845 91664 broad.mit.edu;ucsc.edu 37 19 53856702 53856702 + Missense_Mutation SNP G A A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ZNF99 7652 broad.mit.edu;hgsc.bcm.edu 37 19 22940439 22940439 + Missense_Mutation SNP C C G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 EP400 57634 broad.mit.edu 37 12 132547141 132547141 + Silent SNP G A A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 FAM110C 642273 broad.mit.edu 37 2 45667 45667 + Missense_Mutation SNP C T T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 FAM131C 348487 broad.mit.edu 37 1 16361919 16361919 + Silent SNP G A A rs148785270 by1000genomes TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 LOC220429 0 broad.mit.edu 37 13 50466815 50466815 + Missense_Mutation SNP C T T rs56215346 byfrequency;by1000genomes TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 LOC285074 285074 broad.mit.edu 37 2 87261325 87261325 + Missense_Mutation SNP T C C rs3187359 TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 LRRC56 115399 broad.mit.edu 37 11 551241 551241 + Silent SNP G C C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MLL4 9757 broad.mit.edu 37 19 36211503 36211503 + Silent SNP A C C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MLLT3 4300 broad.mit.edu 37 9 20414379 20414379 + Silent SNP G A A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MUC4 4585 broad.mit.edu 37 3 195506315 195506315 + Missense_Mutation SNP T C C rs62282465 byfrequency TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MUC4 4585 broad.mit.edu 37 3 195509563 195509563 + Missense_Mutation SNP A T T rs28605870 TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MUC4 4585 broad.mit.edu 37 3 195509939 195509939 + Missense_Mutation SNP G T T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MUC4 4585 broad.mit.edu 37 3 195509941 195509941 + Missense_Mutation SNP A C C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MUC4 4585 broad.mit.edu 37 3 195510133 195510133 + Missense_Mutation SNP T C C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MUC4 4585 broad.mit.edu 37 3 195510146 195510146 + Missense_Mutation SNP G C C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MUC4 4585 broad.mit.edu 37 3 195512214 195512214 + Silent SNP G C C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 OR8H1 219469 broad.mit.edu 37 11 56057618 56057618 + Silent SNP T C C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 PKHD1 5314 broad.mit.edu 37 6 51915062 51915062 + Silent SNP T G G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 RGS6 9628 broad.mit.edu 37 14 72976891 72976891 + Missense_Mutation SNP G T T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 TRIM66 9866 broad.mit.edu 37 11 8662083 8662083 + Silent SNP T G G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 TRRAP 8295 broad.mit.edu 37 7 98574329 98574329 + Missense_Mutation SNP T G G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 UNC13A 23025 broad.mit.edu 37 19 17799246 17799247 + Frame_Shift_Ins INS - G G novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 UNC13D 201294 broad.mit.edu 37 17 73830529 73830529 + Silent SNP C T T novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 Unknown 0 broad.mit.edu 37 18 109336 109336 + RNA SNP G T T rs36192673 TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ZNF845 91664 broad.mit.edu 37 19 53856730 53856730 + Silent SNP G A A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 ZNF845 91664 broad.mit.edu 37 19 53856761 53856761 + Missense_Mutation SNP T C C novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124 MLL3 58508 broad.mit.edu 37 7 151970836 151970836 + Silent SNP G A A novel TCGA-BP-4770-01A-01D-1501-10 TCGA-BP-4770-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx aecbc5db-f75a-42d0-a84d-aa0369b08eec acf4697e-e118-46c4-827a-76e2e4ab0124