Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA13 154664 broad.mit.edu;ucsc.edu 37 7 48411895 48411895 + Missense_Mutation SNP G A A novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 ACAN 176 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89386810 89386810 + Missense_Mutation SNP G G A novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 ARL11 115761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 50204841 50204841 + Silent SNP C C T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443892 52443892 + Missense_Mutation SNP C C T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 CCDC88B 283234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64108611 64108611 + Missense_Mutation SNP C C T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 CHRD 8646 broad.mit.edu;ucsc.edu 37 3 184103856 184103856 + Missense_Mutation SNP T G G novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 CLASP1 23332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 122273322 122273322 + Missense_Mutation SNP A A G novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 DBH 1621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 136505100 136505100 + Missense_Mutation SNP G G A novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 ECSIT 51295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11618611 11618611 + Missense_Mutation SNP G G T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 ERCC1 2067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45923622 45923622 + Missense_Mutation SNP C C T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 FAM55B 0 broad.mit.edu;ucsc.edu 37 11 114569272 114569272 + Missense_Mutation SNP G A A novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 FAM55B 0 broad.mit.edu;ucsc.edu 37 11 114569274 114569274 + Missense_Mutation SNP A G G novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 FECH 2235 broad.mit.edu;ucsc.edu 37 18 55221616 55221616 + Missense_Mutation SNP G T T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 GRIK1 2897 broad.mit.edu;hgsc.bcm.edu 37 21 31023608 31023608 + Missense_Mutation SNP A A T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 KIAA0664 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2606746 2606746 + Missense_Mutation SNP A A T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 MGA 23269 hgsc.bcm.edu;ucsc.edu 37 15 41961876 41961876 + Frame_Shift_Del DEL G G - novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 NCDN 23154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36026446 36026446 + Missense_Mutation SNP G G C novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 NIPAL4 348938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 156899742 156899742 + Missense_Mutation SNP C C T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 NONO 4841 broad.mit.edu;hgsc.bcm.edu 37 X 70511743 70511743 + Missense_Mutation SNP T T G novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 PLAC4 191585 hgsc.bcm.edu 37 21 42551425 42551425 + Missense_Mutation SNP C C G rs5019195 TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SALL1 6299 hgsc.bcm.edu;ucsc.edu 37 16 51172715 51172716 + Frame_Shift_Ins INS - - A novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SEMA3A 10371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 83590955 83590955 + Missense_Mutation SNP C C T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SIDT2 51092 broad.mit.edu;hgsc.bcm.edu 37 11 117052642 117052642 + Missense_Mutation SNP C C A novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SLC26A11 284129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 78199688 78199688 + Missense_Mutation SNP A A G novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SLC45A1 50651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 8390936 8390936 + Silent SNP C C T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SMARCA2 6595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2056787 2056787 + Missense_Mutation SNP A A T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SOX5 6660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 23818384 23818384 + Missense_Mutation SNP C C T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SPEF2 79925 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 35771808 35771808 + Missense_Mutation SNP A A C novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SPINK5 11005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 147481422 147481422 + Missense_Mutation SNP C C A novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SPINK5 11005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 147481423 147481423 + Missense_Mutation SNP C C A novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 SYNJ1 8867 broad.mit.edu;ucsc.edu 37 21 34011316 34011316 + Nonsense_Mutation SNP G A A novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 TANC1 85461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 160035470 160035470 + Missense_Mutation SNP C C G novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 TSIX 9383 broad.mit.edu;hgsc.bcm.edu 37 X 73040547 73040547 + RNA SNP A A G novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179452123 179452123 + Missense_Mutation SNP T T C novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 CMIP 80790 broad.mit.edu 37 16 81712128 81712128 + Missense_Mutation SNP T C C novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 FAM86D 0 broad.mit.edu 37 3 75475719 75475719 + Silent SNP C G G novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 MFI2 4241 broad.mit.edu 37 3 196733606 196733606 + Silent SNP G T T novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8 PTPRM 5797 broad.mit.edu 37 18 8253332 8253332 + Missense_Mutation SNP G A A novel TCGA-BP-4962-01A-01D-1462-08 TCGA-BP-4962-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 3454a6fe-2547-4531-a0be-cb27c1879e72 bb91bd89-bf58-47f8-a5fc-e54adf4264f8