Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACCN1 0 hgsc.bcm.edu;ucsc.edu 37 17 31438954 31438961 + Frame_Shift_Del DEL CAGGTACT CAGGTACT - novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 CAGGTACT CAGGTACT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 ALG10 84920 broad.mit.edu;hgsc.bcm.edu 37 12 34178892 34178892 + Missense_Mutation SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 ALLC 55821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 3727474 3727474 + Missense_Mutation SNP T T C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 AQP7 364 hgsc.bcm.edu 37 9 33386465 33386465 + Missense_Mutation SNP A A G rs74668961 TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 ASPSCR1 79058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79954308 79954308 + Missense_Mutation SNP G G T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 ATP7B 540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52539139 52539139 + Missense_Mutation SNP G G T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 B3GAT2 135152 broad.mit.edu;ucsc.edu 37 6 71571408 71571408 + Missense_Mutation SNP G C C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 BHLHB9 80823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 102004677 102004677 + Missense_Mutation SNP G G T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32911477 32911477 + Silent SNP A A T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 C18orf19 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 13681730 13681730 + Missense_Mutation SNP T T C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 CC2D1B 200014 hgsc.bcm.edu 37 1 52824974 52824975 + Frame_Shift_Ins INS - - G novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 CCDC47 57003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61841511 61841511 + Missense_Mutation SNP G G C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 CHD7 55636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 61769234 61769234 + Silent SNP T T C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 CLRN3 119467 hgsc.bcm.edu;ucsc.edu 37 10 129682022 129682023 + Frame_Shift_Ins INS - - TGCG novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 CLSTN3 9746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7301668 7301668 + Missense_Mutation SNP C C A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 CNTNAP2 26047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 146829512 146829512 + Missense_Mutation SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 CUL3 8452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225368421 225368421 + Missense_Mutation SNP G G C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 DDX46 9879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134126242 134126242 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 DNAJC2 27000 broad.mit.edu;hgsc.bcm.edu 37 7 102982243 102982243 + Missense_Mutation SNP T T C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 DOCK8 81704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 340260 340260 + Missense_Mutation SNP C C A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 DOCK8 81704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 340261 340261 + Missense_Mutation SNP C C A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 DONSON 29980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 34956957 34956957 + Missense_Mutation SNP C C T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 DUOX1 53905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45454451 45454451 + Missense_Mutation SNP A A T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 EDDM3B 64184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21238699 21238699 + Silent SNP C C T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 EIF2AK2 5610 hgsc.bcm.edu;ucsc.edu 37 2 37368712 37368712 + Frame_Shift_Del DEL C C - novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 EMR3 84658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 14740973 14740973 + Missense_Mutation SNP T T A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 EPHB1 2047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 134967305 134967305 + Missense_Mutation SNP A A T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 EPN2 22905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 19186717 19186717 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 EXTL3 2137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28575522 28575522 + Missense_Mutation SNP A A C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 FBN1 2200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48779393 48779393 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 FBXW8 26259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117448166 117448166 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 FBXW8 26259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117448167 117448167 + Missense_Mutation SNP A A C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 GLI2 2736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 121747767 121747767 + Missense_Mutation SNP C C T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 GPATCH8 23131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42477630 42477630 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 GPR65 8477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 88477438 88477438 + Missense_Mutation SNP T T G novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 HEATR2 54919 broad.mit.edu;ucsc.edu 37 7 780466 780466 + Missense_Mutation SNP C T T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 KIAA1267 0 hgsc.bcm.edu;ucsc.edu 37 17 44144984 44144984 + Frame_Shift_Del DEL C C - novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 KRT36 8689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39643672 39643672 + Missense_Mutation SNP C C A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 LEPR 3953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 66067338 66067338 + Missense_Mutation SNP C C T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 LPCAT3 10162 hgsc.bcm.edu;ucsc.edu 37 12 7090193 7090193 + Missense_Mutation SNP A A C rs1984564 bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 LRRK1 79705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 101597210 101597210 + Silent SNP A A T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 MAPRE3 22924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27245101 27245101 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 MARS2 92935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 198571443 198571443 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 MBOAT1 154141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 20144501 20144501 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 MFHAS1 9258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8748228 8748228 + Silent SNP G G T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 MMEL1 79258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 2541226 2541226 + Missense_Mutation SNP C C T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 MPZL1 9019 broad.mit.edu;hgsc.bcm.edu 37 1 167734877 167734877 + Missense_Mutation SNP A A C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 MS4A12 54860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60265040 60265040 + Missense_Mutation SNP C C A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 MYL7 58498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 44179950 44179950 + Missense_Mutation SNP G G C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 NLK 51701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 26449740 26449740 + Silent SNP T T C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 NUMB 8650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 73746101 73746101 + Silent SNP A A G novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 OR8G5 219865 hgsc.bcm.edu 37 11 124134972 124134973 + Frame_Shift_Ins INS - - T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 PAK1 5058 hgsc.bcm.edu 37 11 77103527 77103528 + Frame_Shift_Ins INS - - G novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82583794 82583794 + Missense_Mutation SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 PIGQ 9091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 633428 633428 + Missense_Mutation SNP G G T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 PIP4K2A 5305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 22896899 22896899 + Missense_Mutation SNP C C T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 PLS3 5358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 114880823 114880823 + Silent SNP G G C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 PLXNA4 91584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 131895713 131895713 + Missense_Mutation SNP G G T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 PRPF19 27339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60658695 60658695 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 RBM16 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 155154022 155154022 + Missense_Mutation SNP G G T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 RPRD2 23248 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150432593 150432593 + Missense_Mutation SNP C C T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 RTN4RL1 146760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1840903 1840903 + Silent SNP G G T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39026031 39026031 + Missense_Mutation SNP A A G novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SGK223 157285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8185726 8185726 + Missense_Mutation SNP C C T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SIM2 6493 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 38084845 38084845 + Missense_Mutation SNP T T A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SLAMF7 57823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160718025 160718025 + Missense_Mutation SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SLC25A44 9673 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156169881 156169881 + Silent SNP C C A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SLC35A5 55032 hgsc.bcm.edu;ucsc.edu 37 3 112299395 112299396 + Frame_Shift_Ins INS - - A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SLC39A1 27173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153932643 153932643 + Silent SNP C C T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SLC39A3 29985 hgsc.bcm.edu;ucsc.edu 37 19 2737131 2737131 + Frame_Shift_Del DEL T T - novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11129632 11129632 + Splice_Site SNP G G A rs113895708 alternate_allele TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SMARCAL1 50485 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 217280065 217280065 + Missense_Mutation SNP G G C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SMEK2 57223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 55825590 55825590 + Missense_Mutation SNP T T A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 SPZ1 84654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79616823 79616823 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 STYK1 55359 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10772767 10772767 + Silent SNP G G C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 TNRC6C 57690 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76046332 76046332 + Missense_Mutation SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 TP63 8626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 189604291 189604291 + Silent SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 TRPM2 7226 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 45859019 45859019 + Missense_Mutation SNP T T A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 UNC13C 440279 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 54626051 54626051 + Missense_Mutation SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 USP34 9736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61566797 61566797 + Silent SNP A A G novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 VAV1 7409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6853050 6853050 + Silent SNP C C T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191507 10191507 + Frame_Shift_Del DEL G G - novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 VHL 7428 hgsc.bcm.edu 37 3 10191509 10191509 + Missense_Mutation SNP A A T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 WHSC1L1 54904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38135924 38135924 + Missense_Mutation SNP T T G novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 XRCC4 7518 hgsc.bcm.edu;ucsc.edu 37 5 82491622 82491623 + Frame_Shift_Ins INS - - A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 ZNF250 58500 hgsc.bcm.edu;ucsc.edu 37 8 146107815 146107816 + Frame_Shift_Ins INS - - T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 ZXDC 79364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 126160625 126160625 + Nonsense_Mutation SNP G G A novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 ANKRD36 375248 broad.mit.edu 37 2 97864367 97864367 + Frame_Shift_Del DEL A - - novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 AP3D1 8943 broad.mit.edu 37 19 2115366 2115366 + Missense_Mutation SNP C T T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 MPST 4357 broad.mit.edu 37 22 37420445 37420445 + Frame_Shift_Del DEL C - - novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 PRG4 23572 broad.mit.edu 37 1 186276051 186276051 + Silent SNP C T T novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 PRG4 23572 broad.mit.edu 37 1 186276052 186276052 + Missense_Mutation SNP A C C novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9 UBXN11 91544 broad.mit.edu 37 1 26623424 26623424 + Missense_Mutation SNP C G G novel TCGA-BP-4963-01A-01D-1462-08 TCGA-BP-4963-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 154bfa5d-0d9a-40c6-a2a5-bde1054702c3 b04cb512-8edf-466c-af10-9a2fba9bc4a9