Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ARHGAP29 9411 broad.mit.edu;ucsc.edu 37 1 94649704 94649707 + Splice_Site DEL TACC - - novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 TACC TACC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 ATMIN 23300 hgsc.bcm.edu 37 16 81077767 81077774 + Frame_Shift_Del DEL TAAATCAA TAAATCAA - novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 TAAATCAA TAAATCAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 ATP10B 23120 broad.mit.edu;ucsc.edu 37 5 160061395 160061395 + Silent SNP G A A novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 BCORL1 63035 hgsc.bcm.edu 37 X 129189951 129189952 + Frame_Shift_Ins INS - - G novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 CDK11B 984 hgsc.bcm.edu 37 1 1571829 1571829 + Silent SNP A A G rs147836863 TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 CDK11B 984 hgsc.bcm.edu 37 1 1571841 1571841 + Missense_Mutation SNP A A C rs150949339 TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 COL8A2 1296 broad.mit.edu;hgsc.bcm.edu 37 1 36564618 36564618 + Missense_Mutation SNP C C A novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 CTNNB1 1499 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 41275110 41275110 + Missense_Mutation SNP A A G novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 CYFIP1 23191 hgsc.bcm.edu;ucsc.edu 37 15 22928433 22928434 + Frame_Shift_Del DEL AG AG - novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 DOCK2 1794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 169477270 169477270 + Missense_Mutation SNP T T A novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 FLNC 2318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 128484237 128484237 + Missense_Mutation SNP A A G novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89979836 89979836 + Missense_Mutation SNP G G C novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 HNRNPUL2 221092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62489317 62489317 + Missense_Mutation SNP G G T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 HSP90AB1 3326 hgsc.bcm.edu;ucsc.edu 37 6 44219502 44219503 + Frame_Shift_Ins INS - - C novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 KEAP1 9817 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10610395 10610395 + Silent SNP A A G novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 KIAA0556 23247 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27715251 27715251 + Missense_Mutation SNP G G T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 NBEA 26960 broad.mit.edu;hgsc.bcm.edu 37 13 36220480 36220480 + Missense_Mutation SNP C C T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 NCOR1 9611 hgsc.bcm.edu 37 17 16097825 16097825 + Missense_Mutation SNP T T G rs73281920 bycluster TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 NEDD9 4739 hgsc.bcm.edu;ucsc.edu 37 6 11185683 11185684 + Frame_Shift_Ins INS - - G novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 NINL 22981 hgsc.bcm.edu 37 20 25457050 25457055 + In_Frame_Del DEL CTCCCA CTCCCA - rs68078266 bycluster;by1000genomes TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 CTCCCA CTCCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 NPHP3 27031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 132418875 132418875 + Missense_Mutation SNP G G T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 NUP210L 91181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154042867 154042867 + Missense_Mutation SNP A A C novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 PABPC1 26986 hgsc.bcm.edu 37 8 101725327 101725327 + Silent SNP T T C rs62513927 TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643770 52643770 + Missense_Mutation SNP A A G novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 PCDHB15 56121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140625223 140625223 + Missense_Mutation SNP C C T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 PLXNB2 23654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50717397 50717397 + Missense_Mutation SNP G G A novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 PNLIP 5406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 118321017 118321017 + Missense_Mutation SNP T T A novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 PTPRJ 5795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 48166268 48166268 + Missense_Mutation SNP G G T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 RBPJ 3516 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 26426100 26426100 + Silent SNP C C T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 SEMA6D 80031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48053615 48053615 + Missense_Mutation SNP G G T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 SHB 6461 hgsc.bcm.edu 37 9 37974676 37974677 + Frame_Shift_Ins INS - - G novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 SLIT3 6586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 168098202 168098202 + Splice_Site SNP C C G novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 SPEG 10290 hgsc.bcm.edu 37 2 220331989 220331990 + Frame_Shift_Ins INS - - G novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 TINAG 27283 hgsc.bcm.edu;ucsc.edu 37 6 54173613 54173614 + Frame_Shift_Del DEL AG AG - novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 TNC 3371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 117825304 117825304 + Missense_Mutation SNP G G A novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 URB2 9816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 229773797 229773797 + Missense_Mutation SNP C C T rs141779194 TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 VHL 7428 hgsc.bcm.edu 37 3 10183744 10183744 + Silent SNP C C T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 ZNF223 7766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44570596 44570596 + Silent SNP G G A novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 C21orf99 0 broad.mit.edu 37 21 14437700 14437700 + RNA DEL A - - novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 CNNM3 26505 broad.mit.edu 37 2 97493923 97493923 + Missense_Mutation SNP C T T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 HAS1 3036 broad.mit.edu 37 19 52216712 52216712 + Missense_Mutation SNP G A A novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567 LOC341056 341056 broad.mit.edu 37 11 122888720 122888720 + RNA SNP C T T novel TCGA-BP-4973-01A-01D-1462-08 TCGA-BP-4973-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5db95dcc-97e3-42a5-87dd-75a09b9c164a 64a62b71-e48d-4e06-ab02-23f2b8a6c567