Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADCY9 115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4165079 4165079 + Missense_Mutation SNP T T C novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac AKR1B10 57016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134221461 134221461 + Missense_Mutation SNP C C G novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac ATE1 11101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 123503288 123503288 + Silent SNP C C T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac ATP7B 540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52511675 52511675 + Missense_Mutation SNP C C T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac BIRC6 57448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 32693017 32693017 + Missense_Mutation SNP T T G novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac C10orf107 219621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 63520664 63520664 + Missense_Mutation SNP C C T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac C11orf73 51501 broad.mit.edu;hgsc.bcm.edu 37 11 86048459 86048459 + Missense_Mutation SNP G G A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac C12orf74 338809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 93100735 93100735 + Missense_Mutation SNP T T G rs183080897 by1000genomes;alternate_allele TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac C13orf31 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 44458052 44458052 + Missense_Mutation SNP C C A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac C16orf3 750 hgsc.bcm.edu 37 16 90095596 90095596 + Missense_Mutation SNP A A G rs55742939 TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac C16orf3 750 hgsc.bcm.edu 37 16 90095597 90095597 + Missense_Mutation SNP T T C rs61118444 byfrequency TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac CAPN9 10753 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 230891141 230891141 + Missense_Mutation SNP A A G novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac CCDC129 223075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 31683360 31683360 + Silent SNP C C A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac CDH1 999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68862136 68862136 + Silent SNP C C T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac COBL 23242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 51261213 51261213 + Missense_Mutation SNP T T A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac COL5A2 1290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 189906379 189906379 + Missense_Mutation SNP T T C novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 17151661 17151661 + Missense_Mutation SNP A A T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac FBN2 2201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127714472 127714472 + Missense_Mutation SNP G G A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac FXYD5 53827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 35651641 35651641 + Missense_Mutation SNP C C A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac GALNT5 11227 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158115425 158115425 + Frame_Shift_Del DEL T T - novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac LHX6 26468 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 124975917 124975917 + Missense_Mutation SNP G G A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac MAMDC4 158056 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139748706 139748706 + Silent SNP C C T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac MBD4 8930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 129152917 129152917 + Missense_Mutation SNP A A G novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac MOB2 81532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 1491652 1491652 + Missense_Mutation SNP A A T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac OR3A1 4994 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3195183 3195183 + Missense_Mutation SNP G G A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac PARP11 57097 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 3939160 3939160 + Missense_Mutation SNP A A T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac RNF32 140545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 156450264 156450264 + Silent SNP C C T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac SDK2 54549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 71429905 71429905 + Silent SNP C C T rs142980422 by1000genomes TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac SEC63 11231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 108227661 108227661 + Missense_Mutation SNP G G A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac SERPINE2 5270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 224866441 224866441 + Silent SNP C C T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac SLC22A4 6583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131671519 131671519 + Missense_Mutation SNP T T A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac SLC7A3 84889 broad.mit.edu;hgsc.bcm.edu 37 X 70148386 70148386 + Silent SNP G G A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac SSH2 85464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27999019 27999019 + Missense_Mutation SNP T T G novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac TAS1R2 80834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19167003 19167003 + Missense_Mutation SNP G G A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac TEX11 56159 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 69825332 69825332 + Silent SNP C C A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac THBS1 7057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 39877708 39877708 + Missense_Mutation SNP T T C novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac TMEM165 55858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 56277929 56277929 + Missense_Mutation SNP T T C novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac TMX3 54495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 66367641 66367641 + Splice_Site SNP C C A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac TNC 3371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 117840239 117840239 + Missense_Mutation SNP T T A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191611 10191612 + Frame_Shift_Del DEL AC AC - novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 AC AC AC - AC AC Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac ZBTB41 360023 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197159944 197159944 + Missense_Mutation SNP G G T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac ZFYVE26 23503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68270971 68270971 + Missense_Mutation SNP G G T novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac ZNF782 158431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 99581317 99581317 + Missense_Mutation SNP T T C novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac AEBP1 165 broad.mit.edu 37 7 44147521 44147521 + Missense_Mutation SNP G A A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac MON2 23041 broad.mit.edu 37 12 62887719 62887719 + Missense_Mutation SNP T A A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac NCRNA00164 0 broad.mit.edu 37 2 132911119 132911119 + RNA SNP T A A novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac RANBP2 5903 broad.mit.edu 37 2 109382975 109382975 + Missense_Mutation SNP G C C novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac RXRB 6257 broad.mit.edu 37 6 33168094 33168094 + Frame_Shift_Del DEL C - - novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac Unknown 0 broad.mit.edu 37 15 29083900 29083900 + RNA SNP A G G novel TCGA-BP-4977-01A-01D-1462-08 TCGA-BP-4977-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 7c3bf7c1-07d9-4540-9a5e-614fd60b63ec 1a98cd70-7661-4e02-8d83-30b08d24ceac