Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACADM 34 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 76205772 76205772 + Missense_Mutation SNP A A G novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b ACIN1 22985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 23549183 23549183 + Missense_Mutation SNP T T A rs112438189 alternate_allele TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b AGRN 375790 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 970662 970662 + Missense_Mutation SNP C C A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b AP4B1 10717 broad.mit.edu;ucsc.edu 37 1 114439000 114439000 + Missense_Mutation SNP C A A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b AZU1 566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 830861 830861 + Missense_Mutation SNP G G A rs145363133 TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b BPI 671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36946865 36946865 + Missense_Mutation SNP C C A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b C1orf65 164127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 223568377 223568377 + Silent SNP C C T novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b C3orf17 25871 broad.mit.edu;hgsc.bcm.edu 37 3 112732116 112732116 + RNA SNP T T C novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b CCDC59 29080 hgsc.bcm.edu;ucsc.edu 37 12 82752142 82752143 + Frame_Shift_Del DEL CT CT - novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b CLCC1 23155 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109482394 109482394 + Missense_Mutation SNP A A T novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b CUX1 1523 broad.mit.edu;hgsc.bcm.edu 37 7 101813771 101813771 + Missense_Mutation SNP C C A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b FTL 2512 broad.mit.edu;hgsc.bcm.edu 37 19 49468842 49468842 + Silent SNP G G A rs11553227 alternate_allele TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b GLDN 342035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51696755 51696755 + Missense_Mutation SNP C C A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b HPSE2 60495 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 100481428 100481428 + Silent SNP G G A rs142810016 alternate_allele TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b KRTAP10-3 386682 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 45978577 45978577 + Missense_Mutation SNP C C A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b LUC7L3 51747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48818534 48818534 + Missense_Mutation SNP T T G novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b NDE1 54820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15761201 15761201 + Missense_Mutation SNP G G A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b NDE1 54820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 15761202 15761202 + Missense_Mutation SNP C C G novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b NDUFAF3 25915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49059885 49059885 + Missense_Mutation SNP A A G novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b NIT2 56954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 100059917 100059917 + Missense_Mutation SNP G G T novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b NIT2 56954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 100059918 100059918 + Silent SNP C C T novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b OR2H2 7932 broad.mit.edu;hgsc.bcm.edu 37 6 29556320 29556320 + Missense_Mutation SNP C C T novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b PARP1 142 broad.mit.edu;ucsc.edu 37 1 226564845 226564845 + Silent SNP G C C novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52702612 52702612 + Nonsense_Mutation SNP T T A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b PLB1 151056 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 28752200 28752200 + Silent SNP C C A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b PSMF1 9491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 1144992 1144992 + Silent SNP C C T novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b RABEP1 9135 hgsc.bcm.edu 37 17 5268432 5268432 + Missense_Mutation SNP C C A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b SCAP 22937 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47455554 47455554 + Silent SNP T T A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b SETBP1 26040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 42531862 42531862 + Missense_Mutation SNP C C A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b SKIV2L2 23517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 54618206 54618206 + Silent SNP T T C novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b SPAG8 26206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35810979 35810979 + Missense_Mutation SNP G G A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b ST8SIA3 51046 broad.mit.edu;ucsc.edu 37 18 55020256 55020256 + Missense_Mutation SNP G T T novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b SUPV3L1 6832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70967647 70967647 + Silent SNP C C A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b SYT15 83849 broad.mit.edu;hgsc.bcm.edu 37 10 46968685 46968685 + Missense_Mutation SNP T T G novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b TCP11 6954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35086135 35086135 + Missense_Mutation SNP G G T novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b UBE2H 7328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129592346 129592346 + Missense_Mutation SNP T T A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b UBL4B 164153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110655193 110655193 + Missense_Mutation SNP T T A novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b WHSC1L1 54904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38173525 38173525 + Missense_Mutation SNP T T C novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b XPC 7508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 14188848 14188848 + Missense_Mutation SNP T T G novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b ZNF283 284349 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44352476 44352476 + Nonsense_Mutation SNP G G T novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b ACOT7 11332 broad.mit.edu 37 1 6387379 6387379 + Missense_Mutation SNP A G G novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b Unknown 0 broad.mit.edu 37 15 102292829 102292829 + Missense_Mutation SNP C G G novel TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b VHL 7428 broad.mit.edu 37 3 10183794 10183794 + Nonsense_Mutation SNP G A A rs119103277 alternate_allele TCGA-BP-4982-01A-01D-1462-08 TCGA-BP-4982-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454;Illumina Miseq;PacBio Illumina GAIIx 84591a73-bed0-4ad5-9acd-8f31acf27af0 7e643798-5764-43b3-bd79-a92f2c34415b