Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACOT2 10965 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74036025 74036025 + Silent SNP C C G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad ADCY3 109 hgsc.bcm.edu 37 2 25061418 25061419 + Frame_Shift_Ins INS - - G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad ADCY5 111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 123005537 123005537 + Missense_Mutation SNP T T C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad AGTPBP1 23287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 88207597 88207597 + Missense_Mutation SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad AGXT 189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241808356 241808356 + Missense_Mutation SNP T T C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad ARHGAP17 55114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 24942263 24942263 + Missense_Mutation SNP G G T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad ATP1A2 477 broad.mit.edu;ucsc.edu 37 1 160093040 160093040 + Missense_Mutation SNP G T T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad C12orf51 0 broad.mit.edu;hgsc.bcm.edu 37 12 112673071 112673071 + Splice_Site SNP C C A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad C14orf148 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77880341 77880341 + Silent SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad C4orf14 0 hgsc.bcm.edu 37 4 57842813 57842813 + Silent SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CAMK1D 57118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12595350 12595350 + Silent SNP G G T rs56079552 alternate_allele TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CASKIN1 57524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2233883 2233883 + Silent SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CCDC8 83987 hgsc.bcm.edu 37 19 46914620 46914620 + Frame_Shift_Del DEL G G - novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CD4 920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6923323 6923323 + Missense_Mutation SNP A A T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CLCN3 1182 hgsc.bcm.edu;ucsc.edu 37 4 170618812 170618815 + Frame_Shift_Del DEL ATTC ATTC - novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 ATTC ATTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CS 1431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56668847 56668847 + Missense_Mutation SNP T T A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CTDNEP1 23399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7147938 7147938 + Silent SNP G G T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad DDX5 1655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62496043 62496043 + Missense_Mutation SNP A A G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad DEFB116 245930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 29891069 29891069 + Silent SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad DUOXA1 90527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45412823 45412823 + Missense_Mutation SNP C C A rs147223934 byfrequency;alternate_allele TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad DUOXA1 90527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45412824 45412824 + Missense_Mutation SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad ECE1 1889 broad.mit.edu;hgsc.bcm.edu 37 1 21616586 21616586 + Missense_Mutation SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad EIF2C4 192670 hgsc.bcm.edu;ucsc.edu 37 1 36290935 36290935 + Frame_Shift_Del DEL C C - novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad EPHB4 2050 hgsc.bcm.edu 37 7 100403283 100403284 + Frame_Shift_Ins INS - - C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad FKTN 2218 hgsc.bcm.edu;ucsc.edu 37 9 108377609 108377609 + Frame_Shift_Del DEL A A - novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad FXR2 9513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 7508978 7508978 + Silent SNP T T C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad GNB1 2782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 1749311 1749311 + Missense_Mutation SNP C C A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad GPR19 2842 broad.mit.edu;ucsc.edu 37 12 12815272 12815272 + Silent SNP G A A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad HEPHL1 341208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 93797666 93797666 + Missense_Mutation SNP C C A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad HRC 3270 hgsc.bcm.edu 37 19 49657177 49657178 + Frame_Shift_Ins INS - - G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad ITGA3 3675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48148238 48148238 + Missense_Mutation SNP G G T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad KLRC2 3822 hgsc.bcm.edu 37 12 10586422 10586422 + Frame_Shift_Del DEL T T - novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad LUZP1 7798 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 23418890 23418890 + Missense_Mutation SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad LYPD2 137797 broad.mit.edu;hgsc.bcm.edu 37 8 143832568 143832568 + Missense_Mutation SNP C C G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad MAGEC1 9947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 140993825 140993825 + Missense_Mutation SNP G G C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad MAML3 55534 hgsc.bcm.edu;ucsc.edu 37 4 140641167 140641167 + Frame_Shift_Del DEL A A - novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad MAP7D3 79649 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135314179 135314179 + Missense_Mutation SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad MARCH10 162333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 60802312 60802312 + Silent SNP C C A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad MCCC2 64087 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 70930789 70930789 + Missense_Mutation SNP C C G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad MCM3AP 8888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47692476 47692476 + Nonsense_Mutation SNP T T A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad MMP7 4316 hgsc.bcm.edu 37 11 102401379 102401380 + Frame_Shift_Ins INS - - G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad MN1 4330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 28192794 28192794 + Silent SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad MOCS3 27304 hgsc.bcm.edu 37 20 49575507 49575508 + Frame_Shift_Ins INS - - G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9076252 9076252 + Missense_Mutation SNP A A T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad NEGR1 257194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 72748110 72748110 + Missense_Mutation SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad NLRP7 199713 broad.mit.edu;hgsc.bcm.edu 37 19 55450880 55450880 + Missense_Mutation SNP T T C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad NOX4 50507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 89075257 89075257 + Missense_Mutation SNP A A C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad NPPB 4879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11918438 11918438 + Missense_Mutation SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad OPRD1 4985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29189406 29189406 + Missense_Mutation SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad OPRM1 4988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 154412549 154412549 + Missense_Mutation SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad PAK7 57144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 9520140 9520140 + Missense_Mutation SNP A A T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad PANK2 80025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 3899360 3899360 + Missense_Mutation SNP A A C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643348 52643348 + Nonsense_Mutation SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad PCDH10 57575 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 134071517 134071517 + Nonsense_Mutation SNP C C A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad PDHA2 5161 hgsc.bcm.edu 37 4 96761930 96761949 + Frame_Shift_Del DEL CTTTATGGAAATTACCTTGT CTTTATGGAAATTACCTTGT - novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 CTTTATGGAAATTACCTTGT CTTTATGGAAATTACCTTGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad PRPF3 9129 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150310685 150310685 + Missense_Mutation SNP C C G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad PRUNE2 158471 hgsc.bcm.edu 37 9 79324135 79324136 + In_Frame_Ins INS - - TGACTGTTGCAG rs11267622 bycluster;by1000genomes TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad RANBP2 5903 broad.mit.edu;hgsc.bcm.edu 37 2 109365421 109365421 + Missense_Mutation SNP A A C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad RBMXL2 27288 hgsc.bcm.edu 37 11 7110548 7110548 + Missense_Mutation SNP C C T rs11041170 bycluster;byfrequency;by1000genomes TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad RIOK3 8780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 21059323 21059323 + Missense_Mutation SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad RPAP1 26015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41813028 41813028 + Missense_Mutation SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad SAMD9 54809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92731889 92731889 + Silent SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad SFXN1 94081 hgsc.bcm.edu;ucsc.edu 37 5 174940584 174940584 + Missense_Mutation SNP C C T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad SLFN5 162394 broad.mit.edu;hgsc.bcm.edu 37 17 33585670 33585670 + Splice_Site SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad SMC2 10592 broad.mit.edu;hgsc.bcm.edu 37 9 106877025 106877025 + Missense_Mutation SNP T T C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad SMOX 54498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 4164251 4164251 + Missense_Mutation SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad SYK 6850 broad.mit.edu;ucsc.edu 37 9 93624627 93624627 + Splice_Site SNP G A A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad SYNCRIP 10492 broad.mit.edu;hgsc.bcm.edu 37 6 86324828 86324828 + Silent SNP A A G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad TET3 200424 hgsc.bcm.edu;ucsc.edu 37 2 74328262 74328263 + Frame_Shift_Ins INS - - A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad THAP11 57215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67877045 67877045 + Silent SNP T T C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad TOX3 27324 hgsc.bcm.edu 37 16 52478206 52478206 + Silent SNP C C T rs3743796 bycluster;byfrequency;by1000genomes TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad TOX3 27324 hgsc.bcm.edu 37 16 52478215 52478215 + Silent SNP C C T rs3743797 bycluster;byfrequency;by1000genomes TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad WDR63 126820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 85546974 85546974 + Missense_Mutation SNP G G A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad ZFP112 7771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44833609 44833609 + Missense_Mutation SNP A A G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad ZNF532 55205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 56587466 56587466 + Silent SNP T T C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad ZNF672 79894 broad.mit.edu;hgsc.bcm.edu 37 1 249142695 249142695 + Missense_Mutation SNP C C A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad ANO10 55129 broad.mit.edu 37 3 43474215 43474215 + Missense_Mutation SNP G A A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad C8orf73 0 broad.mit.edu 37 8 144654816 144654816 + Silent SNP T C C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CDC14A 8556 broad.mit.edu 37 1 100964716 100964716 + Silent SNP A T T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CHD9 80205 broad.mit.edu 37 16 53308192 53308192 + Missense_Mutation SNP G A A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G G G G G Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CIT 11113 broad.mit.edu 37 12 120151395 120151395 + Missense_Mutation SNP C A A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CNGB3 54714 broad.mit.edu 37 8 87588236 87588236 + Missense_Mutation SNP T A A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad CYP4Z2P 163720 broad.mit.edu 37 1 47333687 47333687 + RNA SNP G T T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad KCNB1 3745 broad.mit.edu 37 20 47989844 47989844 + Silent SNP A C C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad LHX1 3975 broad.mit.edu 37 17 35299577 35299577 + Silent SNP C T T novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad LOC284232 0 broad.mit.edu 37 13 19435836 19435836 + RNA SNP A C C novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad LRFN3 79414 broad.mit.edu 37 19 36435683 36435683 + Nonsense_Mutation SNP C A A novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad RYR3 6263 broad.mit.edu 37 15 34113725 34113725 + Silent SNP T G G novel TCGA-BP-4993-01A-02D-1421-08 TCGA-BP-4993-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 34315bea-6ef2-42ec-b17e-c73eed40647f e592ee8d-8949-4639-a397-3035c7ab07ad