Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABL1 25 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133760875 133760875 + Silent SNP C C T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 ALAS1 211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52236547 52236547 + Missense_Mutation SNP T T C novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 ANO9 338440 broad.mit.edu;ucsc.edu 37 11 430378 430378 + Missense_Mutation SNP G T T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 AZI1 22994 broad.mit.edu;ucsc.edu 37 17 79180636 79180636 + Missense_Mutation SNP A T T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 BRCA1 672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41197795 41197795 + Missense_Mutation SNP G G A novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 C3 718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6681963 6681963 + Missense_Mutation SNP A A G novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 C6orf62 81688 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24714642 24714642 + Missense_Mutation SNP C C T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 CASC1 55259 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 25264775 25264775 + Silent SNP A A T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 CENPJ 55835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25466970 25466970 + Missense_Mutation SNP A A T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 COL6A2 1292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47542435 47542435 + Missense_Mutation SNP G G A novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 CTRC 11330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 15771156 15771156 + Silent SNP C C T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 IRF2BP2 359948 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 234743247 234743247 + Missense_Mutation SNP C C A novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 KNG1 3827 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186459690 186459690 + Missense_Mutation SNP G G A novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 LRP11 84918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 150174138 150174138 + Splice_Site SNP C C A novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 NKAIN3 286183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 63492147 63492147 + Missense_Mutation SNP C C G novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 NPHP1 4867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 110919218 110919218 + Missense_Mutation SNP C C T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 OSBP 5007 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 59361486 59361486 + Missense_Mutation SNP T T G novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 PARP12 64761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 139724549 139724549 + Silent SNP G G C novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 PECI 0 broad.mit.edu;hgsc.bcm.edu 37 6 4125471 4125471 + RNA SNP G G T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 PGPEP1 54858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18466813 18466813 + Missense_Mutation SNP A A G novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 PHF3 23469 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 64416765 64416765 + Missense_Mutation SNP A A G novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 PHF8 23133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 54048718 54048718 + Silent SNP T T C novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 PPP1R3A 5506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 113559039 113559039 + Nonsense_Mutation SNP C C A novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 REM1 28954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 30064360 30064360 + Missense_Mutation SNP T T G novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 RPLP0 6175 broad.mit.edu;hgsc.bcm.edu 37 12 120636946 120636946 + Missense_Mutation SNP A A C novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 RREB1 6239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7230362 7230362 + Missense_Mutation SNP A A T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 SLC12A6 9990 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 34544539 34544539 + Missense_Mutation SNP C C T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 SLC4A10 57282 broad.mit.edu;hgsc.bcm.edu 37 2 162730485 162730485 + Missense_Mutation SNP A A C novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 SNX17 9784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27598749 27598749 + Missense_Mutation SNP C C T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 SNX5 27131 broad.mit.edu;ucsc.edu 37 20 17930825 17930825 + Missense_Mutation SNP C T T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 SRRM2 23524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2817282 2817282 + Silent SNP A A T rs111703345 alternate_allele TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 TDRD6 221400 broad.mit.edu;ucsc.edu 37 6 46657418 46657418 + Missense_Mutation SNP G T T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179598118 179598118 + Nonsense_Mutation SNP A A T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188315 10188315 + Missense_Mutation SNP T T C novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 WNT10A 80326 hgsc.bcm.edu 37 2 219746998 219746998 + Missense_Mutation SNP C C T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 EID1 23741 broad.mit.edu 37 15 49170496 49170496 + Silent SNP C A A novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 HEXDC 284004 broad.mit.edu 37 17 80400154 80400154 + Missense_Mutation SNP A C C novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 KIAA0754 643314 broad.mit.edu 37 1 39879328 39879328 + Missense_Mutation SNP G A A novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 LOC347376 0 broad.mit.edu 37 X 50648692 50648692 + Silent SNP C T T novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 NBEAL2 23218 broad.mit.edu 37 3 47043759 47043759 + Missense_Mutation SNP G A A novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 PODXL 5420 broad.mit.edu 37 7 131241030 131241035 + In_Frame_Del DEL GGCGAC - - rs11277659 TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 GGCGAC GGCGAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 POM121L9P 29774 broad.mit.edu 37 22 24659734 24659734 + RNA SNP T C C novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9 Unknown 0 broad.mit.edu 37 1 700532 700532 + RNA DEL T - - novel TCGA-BP-4998-01A-01D-1462-08 TCGA-BP-4998-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e646f930-967b-43a3-bd70-184e5c38efe5 10e99e0b-b3d0-4fbe-ab04-a579616e45a9