Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AGXT2L2 85007 hgsc.bcm.edu 37 5 177649405 177649406 + Frame_Shift_Ins INS - - G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d AIM1 202 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 107009363 107009363 + Silent SNP T T C novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d ARHGAP10 79658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148861016 148861016 + Missense_Mutation SNP T T A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d C12orf64 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 80650146 80650146 + Silent SNP A A C novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d C20orf185 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31657707 31657707 + Missense_Mutation SNP G G A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d C2orf69 205327 hgsc.bcm.edu;ucsc.edu 37 2 200790244 200790244 + Frame_Shift_Del DEL A A - novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d CDK5RAP2 55755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123292386 123292386 + Missense_Mutation SNP C C G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d CHD7 55636 broad.mit.edu;ucsc.edu 37 8 61768568 61768568 + Missense_Mutation SNP G A A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d DPPA3 359787 broad.mit.edu;hgsc.bcm.edu 37 12 7869602 7869602 + Missense_Mutation SNP G G A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 53662902 53662902 + Missense_Mutation SNP A A G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d FABP1 2168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 88425757 88425757 + Missense_Mutation SNP G G C novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d FASN 2194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80039936 80039936 + Missense_Mutation SNP T T G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d FLNA 2316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153594983 153594983 + Missense_Mutation SNP T T G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d FNDC3A 22862 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 49776041 49776041 + Missense_Mutation SNP A A T novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d GALNT10 55568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 153796478 153796478 + Silent SNP G G A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d GPN1 11321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27851883 27851883 + RNA SNP C C A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d GPR112 139378 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 135441605 135441605 + Frame_Shift_Del DEL A A - novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d GRIA2 2891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 158257620 158257620 + Missense_Mutation SNP C C G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d GTPBP2 54676 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43592645 43592645 + Missense_Mutation SNP A A T novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d H2AFY2 55506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 71868913 71868913 + Silent SNP G G A rs41277966 bycluster;byfrequency;by1000genomes TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d IL31RA 133396 broad.mit.edu;hgsc.bcm.edu 37 5 55203210 55203210 + Missense_Mutation SNP T T C novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d KIAA0564 0 hgsc.bcm.edu 37 13 42273315 42273324 + Frame_Shift_Del DEL GTCCACAAAG GTCCACAAAG - novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 GTCCACAAAG GTCCACAAAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d KLHDC10 23008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129761893 129761893 + Splice_Site SNP G G A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d LCP1 3936 hgsc.bcm.edu 37 13 46717458 46717459 + Frame_Shift_Ins INS - - G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d METTL4 64863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 2547514 2547514 + Nonsense_Mutation SNP G G C novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d MFHAS1 9258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8747924 8747924 + Missense_Mutation SNP A A G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d MUC5B 727897 hgsc.bcm.edu 37 11 1258286 1258286 + Silent SNP C C T rs77996005 bycluster;byfrequency;by1000genomes TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d NALCN 259232 broad.mit.edu;hgsc.bcm.edu 37 13 101720364 101720364 + Missense_Mutation SNP G G A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d NMNAT3 349565 hgsc.bcm.edu;ucsc.edu 37 3 139279902 139279902 + Frame_Shift_Del DEL T T - novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d P2RY14 9934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 150931635 150931635 + Missense_Mutation SNP A A G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d PLXDC2 84898 broad.mit.edu;hgsc.bcm.edu 37 10 20465933 20465933 + Missense_Mutation SNP C C G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d RINL 126432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39360226 39360226 + Missense_Mutation SNP C C G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d SCNN1B 6338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 23359975 23359975 + Missense_Mutation SNP G G A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d SEC61A1 29927 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 127785928 127785928 + Silent SNP C C T novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d SPIN3 169981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 57020792 57020794 + In_Frame_Del DEL GAG GAG - novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 GAG GAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d SYCP2L 221711 broad.mit.edu;ucsc.edu 37 6 10898272 10898272 + Missense_Mutation SNP G A A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d TYW1 55253 broad.mit.edu;hgsc.bcm.edu 37 7 66703498 66703498 + Missense_Mutation SNP G G T novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d UNC13A 23025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17760372 17760372 + Silent SNP G G A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183788 10183788 + Missense_Mutation SNP C C T novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS Illumina Miseq Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d WASL 8976 hgsc.bcm.edu 37 7 123332871 123332871 + Missense_Mutation SNP G G A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d CDC42BPB 9578 broad.mit.edu 37 14 103418834 103418834 + Splice_Site SNP C A A novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d FRG1B 284802 broad.mit.edu 37 20 29624070 29624070 + Missense_Mutation SNP G A A rs79198850 TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d HSPH1 10808 broad.mit.edu 37 13 31712675 31712675 + Missense_Mutation SNP C T T novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d LOC554202 0 broad.mit.edu 37 9 21455929 21455929 + RNA SNP G T T novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d PCGF6 84108 broad.mit.edu 37 10 105110747 105110747 + Missense_Mutation SNP G T T novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d SETD2 29072 broad.mit.edu 37 3 47161671 47161671 + Splice_Site SNP C G G novel TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d ZNF428 126299 broad.mit.edu 37 19 44112165 44112165 + Missense_Mutation SNP G T T rs151333697 alternate_allele TCGA-BP-5006-01A-01D-1462-08 TCGA-BP-5006-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 11fb962b-b4b8-46f4-bde4-3f87309e94f3 bab0bd83-abc3-4e81-a927-e65cf576777d