Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACACA 31 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 35545400 35545400 + Missense_Mutation SNP G G T novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca ADAMTS9 56999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 64619448 64619448 + Missense_Mutation SNP G G T novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca ANKRA2 57763 broad.mit.edu;hgsc.bcm.edu 37 5 72849308 72849308 + Missense_Mutation SNP C C A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca AQP12B 653437 hgsc.bcm.edu 37 2 241621800 241621800 + Frame_Shift_Del DEL C C - novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca ATG4D 84971 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 10663721 10663721 + Missense_Mutation SNP C C A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201017771 201017771 + Silent SNP T T A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca CLPTM1 1209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45465320 45465320 + Missense_Mutation SNP G G A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca COL11A2 1302 hgsc.bcm.edu 37 6 33156155 33156155 + Frame_Shift_Del DEL T T - novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca CSNK1A1L 122011 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 37678647 37678647 + Silent SNP A A G novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca DACT1 51339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59113389 59113389 + Missense_Mutation SNP C C A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca EMG1 10436 hgsc.bcm.edu 37 12 7080210 7080211 + Frame_Shift_Ins INS - - G rs113953006 bycluster;by1000genomes TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca FCGBP 8857 broad.mit.edu;hgsc.bcm.edu 37 19 40420153 40420153 + Silent SNP G G C novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca FZD10 11211 broad.mit.edu;hgsc.bcm.edu 37 12 130648146 130648146 + Missense_Mutation SNP G G A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca GRID2 2895 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 94693413 94693413 + Missense_Mutation SNP A A T novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca IKBKAP 8518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 111659236 111659236 + Nonsense_Mutation SNP G G A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca INPP5B 3633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38343913 38343913 + Missense_Mutation SNP T T C novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca KDM4D 55693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94731985 94731985 + Silent SNP T T A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca MICALCL 84953 broad.mit.edu;ucsc.edu 37 11 12316166 12316166 + Silent SNP T G G novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca NMT2 9397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 15151770 15151770 + Missense_Mutation SNP A A T novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca NUP50 10762 broad.mit.edu;hgsc.bcm.edu 37 22 45574718 45574718 + Missense_Mutation SNP T T G novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52610643 52610643 + Missense_Mutation SNP G G T novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca PIWIL2 55124 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 22167480 22167480 + Missense_Mutation SNP G G A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca PLEKHH2 130271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43934682 43934682 + Missense_Mutation SNP G G A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca PRG4 23572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186278973 186278973 + Nonsense_Mutation SNP T T A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca RIN2 54453 hgsc.bcm.edu;ucsc.edu 37 20 19955468 19955468 + Missense_Mutation SNP G G T novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca SIX1 6495 hgsc.bcm.edu 37 14 61113204 61113204 + Missense_Mutation SNP C C T novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca SLC10A3 8273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153716013 153716013 + Missense_Mutation SNP C C G novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca SLC1A5 6510 broad.mit.edu;hgsc.bcm.edu 37 19 47285647 47285647 + Missense_Mutation SNP T T C novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca SPARCL1 8404 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 88394938 88394938 + Missense_Mutation SNP G G C novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca SSPO 23145 broad.mit.edu;hgsc.bcm.edu 37 7 149486417 149486417 + Missense_Mutation SNP C C G novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca ST14 6768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 130066577 130066577 + Missense_Mutation SNP T T A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca USP51 158880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 55513238 55513238 + Missense_Mutation SNP T T A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188320 10188324 + Frame_Shift_Del DEL GGTAC GGTAC - novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 GGTAC GGTAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca ZFP37 7539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 115818875 115818875 + Missense_Mutation SNP G G T novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca ZMYND8 23613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 45853096 45853096 + Missense_Mutation SNP T T C novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca FAM115C 285966 broad.mit.edu 37 7 143417404 143417405 + Frame_Shift_Del DEL CT - - novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca KRTAP4-9 100132386 broad.mit.edu 37 17 39261865 39261865 + Nonsense_Mutation SNP C A A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca MAFA 389692 broad.mit.edu 37 8 144511954 144511956 + In_Frame_Del DEL TGG - - rs141816879 bycluster;by1000genomes TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 TGG TGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca MST1P2 11209 broad.mit.edu 37 1 16974224 16974224 + RNA SNP C G G rs61769737 TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca MST1P9 0 broad.mit.edu 37 1 17086183 17086183 + Splice_Site SNP T G G rs61769735 TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel TCGA-BP-5186-01A-01D-1429-08 TCGA-BP-5186-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 02b98f85-07df-4fb2-b27e-efd368c84ec8 f874ff04-d379-4de4-9a87-c04c045a70ca