Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AGPAT5 55326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 6614716 6614716 + Missense_Mutation SNP C C T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 ARID2 196528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 46245701 46245701 + Silent SNP C C A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 ARL16 339231 hgsc.bcm.edu 37 17 79650800 79650800 + Frame_Shift_Del DEL C C - novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 BCL6 604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 187446848 187446848 + Missense_Mutation SNP T T C novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 CCHCR1 54535 broad.mit.edu;hgsc.bcm.edu 37 6 31122472 31122472 + Missense_Mutation SNP C C T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 CD6 923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60785461 60785461 + Missense_Mutation SNP G G A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 CNTN3 5067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 74474063 74474063 + Missense_Mutation SNP C C A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 CPS1 1373 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 211476961 211476961 + Missense_Mutation SNP G G A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 CTNNA2 1496 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 80136882 80136882 + Missense_Mutation SNP C C T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 DIP2C 22982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 430563 430563 + Missense_Mutation SNP A A G novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 EEF1D 1936 hgsc.bcm.edu;ucsc.edu 37 8 144672056 144672056 + Missense_Mutation SNP G G A rs138749465 TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 ELAC2 60528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 12920219 12920219 + Silent SNP G G A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 EMILIN1 11117 hgsc.bcm.edu;ucsc.edu 37 2 27308027 27308032 + Frame_Shift_Del DEL GGAGTG GGAGTG - novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 GGAGTG GGAGTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 FGFR3 2261 hgsc.bcm.edu 37 4 1807542 1807543 + Frame_Shift_Ins INS - - G novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 FUT11 170384 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75533416 75533416 + Missense_Mutation SNP G G C novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 GAS6 2621 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 114549554 114549554 + Missense_Mutation SNP T T G novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 IPO9 55705 broad.mit.edu;ucsc.edu 37 1 201845133 201845133 + Missense_Mutation SNP G T T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 KDM5C 8242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 53228204 53228204 + Missense_Mutation SNP T T G novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 KRT27 342574 broad.mit.edu;ucsc.edu 37 17 38933946 38933946 + Missense_Mutation SNP A T T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 KSR2 283455 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 118020150 118020150 + Missense_Mutation SNP G G C novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 LAMP3 27074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182871600 182871600 + Missense_Mutation SNP G G A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 MAGEE2 139599 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 75004670 75004670 + Missense_Mutation SNP C C A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 MINK1 50488 broad.mit.edu;hgsc.bcm.edu 37 17 4794820 4794820 + Missense_Mutation SNP G G A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 MLL4 9757 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36219945 36219945 + Missense_Mutation SNP C C T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 MLLT4 4301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 168297599 168297599 + Nonsense_Mutation SNP C C T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 MRPS21 54460 broad.mit.edu;hgsc.bcm.edu 37 1 150266811 150266811 + Missense_Mutation SNP G G A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9009312 9009312 + Missense_Mutation SNP G G A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9009313 9009313 + Missense_Mutation SNP A A T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 NCKAP5 344148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 133541011 133541011 + Missense_Mutation SNP C C A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 OR4M2 390538 broad.mit.edu;hgsc.bcm.edu 37 15 22369272 22369272 + Nonsense_Mutation SNP G G T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 PCDHA2 56146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140174870 140174870 + Silent SNP G G A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 PEPD 5184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 33902626 33902626 + Missense_Mutation SNP C C A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 PLA2G12A 81579 broad.mit.edu;hgsc.bcm.edu 37 4 110650931 110650931 + Missense_Mutation SNP A A G novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 POSTN 10631 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 38154095 38154095 + Missense_Mutation SNP C C A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 RAG2 5897 hgsc.bcm.edu 37 11 36614395 36614396 + Frame_Shift_Ins INS - - G novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 RPL31 6160 broad.mit.edu;hgsc.bcm.edu 37 2 101622534 101622534 + Missense_Mutation SNP G G C novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 SCD5 79966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83719638 83719638 + Missense_Mutation SNP T T G novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 SCRN3 79634 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 175289230 175289230 + Silent SNP G G A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 SLC13A2 9058 hgsc.bcm.edu 37 17 26822695 26822696 + Frame_Shift_Ins INS - - G novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 TMEM149 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36231433 36231433 + Missense_Mutation SNP C C T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 TRPC3 7222 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 122853762 122853762 + Silent SNP G G A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 VPS13D 55187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 12566928 12566928 + Silent SNP T T A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 VPS41 27072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 38803128 38803128 + Missense_Mutation SNP G G C novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 HCFC1 3054 broad.mit.edu 37 X 153236256 153236256 + Silent SNP C A A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 LSM11 134353 broad.mit.edu 37 5 157170976 157170976 + Missense_Mutation SNP G A A novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 MUC6 4588 broad.mit.edu 37 11 1017647 1017647 + Silent SNP G T T novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 SFRP1 6422 broad.mit.edu 37 8 41166638 41166640 + In_Frame_Del DEL GCT - - rs144518405 bycluster;by1000genomes TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 GCT GCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 VHL 7428 broad.mit.edu 37 3 10183715 10183716 + Frame_Shift_Del DEL GT - - novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 GT GT GT - GT GT Unknown Valid Somatic Phase_I WXS Illumina Miseq;PacBio Illumina GAIIx 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48 DST 667 broad.mit.edu 37 6 56373344 56373344 + Missense_Mutation SNP G C C novel TCGA-BP-5190-01A-01D-1429-08 TCGA-BP-5190-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 . . Illumina GAIIx 5491645b-552c-47a9-b081-e8e508d1df3d d2f881a8-f629-40a3-a179-3f8749a51d48