Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACVRL1 94 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52312803 52312803 + Silent SNP T T C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ADAM10 102 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 58904077 58904077 + Missense_Mutation SNP A A G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ALPK3 57538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 85405941 85405941 + Missense_Mutation SNP T T C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ARID1A 8289 hgsc.bcm.edu 37 1 27106455 27106455 + Silent SNP A A C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ARID1A 8289 hgsc.bcm.edu;ucsc.edu 37 1 27106460 27106460 + Frame_Shift_Del DEL G G - novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ASPM 259266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197091068 197091068 + Missense_Mutation SNP T T C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ASPM 259266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 197091070 197091070 + Missense_Mutation SNP A A G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae C4orf21 55345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 113510905 113510905 + Silent SNP A A G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae C4orf21 55345 hgsc.bcm.edu;ucsc.edu 37 4 113540563 113540564 + Frame_Shift_Ins INS - - A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201029896 201029896 + Missense_Mutation SNP T T G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae CBARA1 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 74326491 74326491 + Missense_Mutation SNP G G T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae CLCN6 1185 broad.mit.edu;hgsc.bcm.edu 37 1 11876724 11876724 + Missense_Mutation SNP T T C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae CLCN6 1185 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11876723 11876723 + Missense_Mutation SNP G G A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae CLEC11A 6320 broad.mit.edu;hgsc.bcm.edu 37 19 51228703 51228703 + Silent SNP C C T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae COL4A6 1288 broad.mit.edu;hgsc.bcm.edu 37 X 107681171 107681171 + Splice_Site SNP C C A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae COQ10A 93058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 56663289 56663289 + Missense_Mutation SNP T T C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae CYB5R3 1727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 43024287 43024287 + Missense_Mutation SNP C C A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae DNAJB4 11080 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78481811 78481811 + Silent SNP G G A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae EIF2AK4 440275 broad.mit.edu;hgsc.bcm.edu 37 15 40268968 40268968 + Silent SNP C C A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae FAT2 2196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 150905349 150905349 + Missense_Mutation SNP A A G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae FBXO18 84893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 5937075 5937075 + Missense_Mutation SNP G G T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae FOXRED1 55572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 126142904 126142904 + Missense_Mutation SNP G G T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae FOXRED1 55572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 126142905 126142905 + Nonsense_Mutation SNP T T A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae FTO 79068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 53878083 53878083 + Missense_Mutation SNP T T G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae GBF1 8729 broad.mit.edu;ucsc.edu 37 10 104121490 104121490 + Missense_Mutation SNP C G G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae GIMAP6 474344 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150325294 150325294 + Missense_Mutation SNP T T C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae GLTSCR1 29998 broad.mit.edu;hgsc.bcm.edu 37 19 48198183 48198183 + Missense_Mutation SNP C C A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae GOLGA5 9950 hgsc.bcm.edu;ucsc.edu 37 14 93299661 93299665 + Frame_Shift_Del DEL GATTA GATTA - novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 GATTA GATTA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae GPR12 2835 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 27333002 27333002 + Silent SNP C C T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae HAP1 9001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39884564 39884564 + Missense_Mutation SNP C C A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae HMCN1 83872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186113746 186113746 + Missense_Mutation SNP G G T rs149329415 alternate_allele TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae KLHL20 27252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 173703125 173703125 + Silent SNP A A T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae KLHL4 56062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 86890699 86890699 + Missense_Mutation SNP G G A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae KRT75 9119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52827998 52827998 + Missense_Mutation SNP G G A rs148964521 TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae LCAT 3931 hgsc.bcm.edu;ucsc.edu 37 16 67974104 67974117 + Frame_Shift_Del DEL GCCCACGCCGTAAA GCCCACGCCGTAAA - novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 GCCCACGCCGTAAA GCCCACGCCGTAAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae MAK 4117 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 10802230 10802230 + Silent SNP A A T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae MAP3K6 9064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 27690800 27690800 + Missense_Mutation SNP C C A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae MGAT5 4249 broad.mit.edu;hgsc.bcm.edu 37 2 135076310 135076310 + Missense_Mutation SNP G G C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae MSL3 10943 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 11781972 11781973 + Frame_Shift_Ins INS - - ATCC novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae MYH4 4622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10369589 10369589 + Splice_Site SNP C C T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae PCDHA9 9752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140229361 140229361 + Silent SNP G G A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae PLEKHG4 25894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67318935 67318935 + Missense_Mutation SNP C C T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae PPP2R1B 5519 hgsc.bcm.edu;ucsc.edu 37 11 111624250 111624251 + Frame_Shift_Del DEL TT TT - novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae PQLC3 130814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11312070 11312070 + Missense_Mutation SNP G G A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae PRR12 57479 hgsc.bcm.edu 37 19 50099021 50099021 + Missense_Mutation SNP G G A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae PSMC5 5705 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61908394 61908394 + Splice_Site SNP A A G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae PTEN 5728 broad.mit.edu;hgsc.bcm.edu 37 10 89720677 89720677 + Missense_Mutation SNP T T G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T T G T T Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae PYCARD 29108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31213020 31213020 + Missense_Mutation SNP C C G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae RASA1 5921 hgsc.bcm.edu;ucsc.edu 37 5 86627234 86627238 + Frame_Shift_Del DEL TTATC TTATC - novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 TTATC TTATC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae RILP 83547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1549792 1549792 + Missense_Mutation SNP A A T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae RPL30 6156 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 99054891 99054891 + Missense_Mutation SNP G G C rs9879 alternate_allele TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SDK1 221935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 4014046 4014046 + Silent SNP G G A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SHH 6469 broad.mit.edu;hgsc.bcm.edu 37 7 155596300 155596300 + Missense_Mutation SNP T T C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SHOC2 8036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112764372 112764372 + Silent SNP A A G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SKA3 221150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 21742170 21742170 + Missense_Mutation SNP C C T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SLC22A12 116085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64368297 64368297 + Missense_Mutation SNP G G T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SLC34A3 142680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140126522 140126522 + Splice_Site SNP A A T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SLC39A6 25800 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 33706569 33706569 + Missense_Mutation SNP A A C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SMS 6611 broad.mit.edu;hgsc.bcm.edu 37 X 22002497 22002497 + Missense_Mutation SNP G G T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SQRDL 58472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45962137 45962137 + Silent SNP A A G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SRRM2 23524 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 2809634 2809634 + Missense_Mutation SNP G G T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae SSBP4 170463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18543023 18543023 + Missense_Mutation SNP A A G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae STAB2 55576 broad.mit.edu;hgsc.bcm.edu 37 12 104126850 104126850 + Missense_Mutation SNP G G A rs147807697 by1000genomes;alternate_allele TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae TBXAS1 6916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 139529248 139529248 + Missense_Mutation SNP T T C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae TCEAL4 79921 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 102841696 102841696 + Missense_Mutation SNP A A T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae TMEM2 23670 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 74305109 74305109 + Silent SNP C C T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae TOM1L1 10040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 53027421 53027421 + Missense_Mutation SNP A A G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae TPSD1 23430 hgsc.bcm.edu 37 16 1306971 1306971 + Missense_Mutation SNP A A G rs72775466 bycluster;by1000genomes TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae TPSD1 23430 hgsc.bcm.edu 37 16 1306973 1306973 + Missense_Mutation SNP A A G rs79313952 TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae TRIP13 9319 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 916051 916051 + Missense_Mutation SNP G G C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae UBN1 29855 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4920562 4920562 + Missense_Mutation SNP G G T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae VWA3B 200403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 98914472 98914472 + Missense_Mutation SNP C C A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae WBSCR17 64409 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 70886059 70886059 + Missense_Mutation SNP G G T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae WNK1 65125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 993869 993869 + Missense_Mutation SNP C C G rs143361850 alternate_allele TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZEB1 6935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 31810616 31810616 + Missense_Mutation SNP G G A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZFP91 80829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 58377371 58377371 + Missense_Mutation SNP A A G novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZNF276 92822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89789584 89789584 + Silent SNP G G A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZNF280C 55609 hgsc.bcm.edu;ucsc.edu 37 X 129354384 129354384 + Frame_Shift_Del DEL T T - novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZNF318 24149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43305844 43305844 + Silent SNP C C T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZNF3 7551 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99669413 99669413 + Missense_Mutation SNP C C T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZNF513 130557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27601531 27601531 + Missense_Mutation SNP G G A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZNF609 23060 hgsc.bcm.edu;ucsc.edu 37 15 64967277 64967280 + Frame_Shift_Del DEL GAAA GAAA - novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 GAAA GAAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZNF653 115950 broad.mit.edu;hgsc.bcm.edu 37 19 11597661 11597661 + Missense_Mutation SNP C C A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZNF687 57592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151263418 151263418 + Silent SNP C C A novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae ZNF780A 284323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 40582092 40582092 + Missense_Mutation SNP T T C novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae VHL 7428 hgsc.bcm.edu 37 3 10183840 10183844 + Frame_Shift_Del DEL TGGCA TGGCA - novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 TGGCA TGGCA TGGCA - TGGCA TGGCA Unknown Valid Somatic Phase_I WXS PGM . . Illumina HiSeq 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae PSG1 5669 broad.mit.edu 37 19 43348720 43348720 + Missense_Mutation SNP C T T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae TNRC18 84629 broad.mit.edu 37 7 5352561 5352563 + In_Frame_Del DEL GAG - - novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 GAG GAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae PTEN 5728 broad.mit.edu 37 10 89720741 89720741 + Nonsense_Mutation SNP C T T novel TCGA-BP-5199-01A-01D-1429-08 TCGA-BP-5199-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx 135f3b77-1474-40d8-87a1-15939136e8cd 59dfbb69-0053-4341-9383-650705585dae