Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ARHGAP9 64333 broad.mit.edu;hgsc.bcm.edu 37 12 57871324 57871324 + Missense_Mutation SNP G G T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52442512 52442512 + Missense_Mutation SNP T T C novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T T C T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 C16orf88 400506 broad.mit.edu;ucsc.edu 37 16 19718398 19718398 + Missense_Mutation SNP A G G novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 C17orf57 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 45452174 45452174 + Missense_Mutation SNP C C G novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 C2orf71 388939 hgsc.bcm.edu 37 2 29287926 29287927 + In_Frame_Ins INS - - GCT novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 C2orf83 56918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 228497787 228497787 + Silent SNP G G A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 C6orf70 55780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 170179296 170179296 + Silent SNP T T A rs79095717 alternate_allele TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 CELF3 11189 broad.mit.edu;hgsc.bcm.edu 37 1 151681728 151681728 + Missense_Mutation SNP G G A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 CHEK2 11200 broad.mit.edu;hgsc.bcm.edu 37 22 29091840 29091840 + Missense_Mutation SNP T T C rs74751600 TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 CLK4 57396 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 178050273 178050273 + Missense_Mutation SNP A A G novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 CXCR2 3579 broad.mit.edu;ucsc.edu 37 2 218999551 218999551 + Silent SNP C T T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 ENC1 8507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 73931537 73931537 + Missense_Mutation SNP C C G novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 EPPK1 83481 hgsc.bcm.edu 37 8 144940506 144940506 + Missense_Mutation SNP C C T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 GRID1 2894 broad.mit.edu;ucsc.edu 37 10 87628903 87628903 + Missense_Mutation SNP T G G novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 HGC6.3 100128124 hgsc.bcm.edu 37 6 168377220 168377220 + Missense_Mutation SNP T T A rs79173693 by1000genomes;alternate_allele TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 IGDCC4 57722 hgsc.bcm.edu 37 15 65681661 65681662 + Frame_Shift_Ins INS - - C novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 ITGA1 3672 broad.mit.edu;ucsc.edu 37 5 52145320 52145320 + Splice_Site SNP G T T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 KLF9 687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 73027946 73027946 + Nonsense_Mutation SNP C C A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 LTBR 4055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6495606 6495606 + Missense_Mutation SNP G G T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 MFSD9 84804 hgsc.bcm.edu 37 2 103353153 103353153 + Frame_Shift_Del DEL G G - novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 MUC4 4585 hgsc.bcm.edu 37 3 195510073 195510073 + Missense_Mutation SNP G G A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 MUC4 4585 hgsc.bcm.edu 37 3 195510156 195510156 + Silent SNP G G A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 ORC4 5000 hgsc.bcm.edu;ucsc.edu 37 2 148695897 148695897 + Missense_Mutation SNP C C G novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 PCDH15 65217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 55700700 55700700 + Missense_Mutation SNP G G A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 RASGRP2 10235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64503123 64503123 + Missense_Mutation SNP G G A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 RRM2 6241 hgsc.bcm.edu 37 2 10262859 10262859 + Silent SNP G G A rs72542787 bycluster;byfrequency;by1000genomes TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 SPOCD1 90853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 32266115 32266115 + Missense_Mutation SNP A A T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 ST3GAL3 6487 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44386570 44386570 + Nonsense_Mutation SNP T T A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 TARM1 441864 hgsc.bcm.edu 37 19 54573304 54573304 + Missense_Mutation SNP T T C novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 UHRF1 29128 hgsc.bcm.edu 37 19 4954679 4954680 + Frame_Shift_Ins INS - - C rs78623648 bycluster;by1000genomes TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 VCP 7415 broad.mit.edu;ucsc.edu 37 9 35068351 35068351 + Missense_Mutation SNP C A A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188204 10188204 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 WDR52 55779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 113127995 113127995 + Missense_Mutation SNP T T G novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 ADCY5 111 broad.mit.edu 37 3 123049743 123049743 + Missense_Mutation SNP C T T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 BEAN 0 broad.mit.edu 37 16 66511499 66511499 + Translation_Start_Site SNP G T T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 ELK1 2002 broad.mit.edu 37 X 47498682 47498682 + Missense_Mutation SNP G A A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 LOC100132832 100132832 broad.mit.edu 37 7 76681226 76681226 + RNA SNP G C C rs76001678 TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 PCDHGA3 56112 broad.mit.edu 37 5 140725547 140725547 + Silent SNP C T T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 PRUNE2 158471 broad.mit.edu 37 9 79469063 79469063 + Missense_Mutation SNP T C C novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 RRAD 6236 broad.mit.edu 37 16 66956073 66956073 + Missense_Mutation SNP G T T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 STK31 56164 broad.mit.edu 37 7 23750185 23750185 + Intron SNP C A A novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 TEX14 56155 broad.mit.edu 37 17 56651592 56651592 + Silent SNP T C C novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 Unknown 0 broad.mit.edu 37 1 713786 713787 + RNA INS - GCT GCT novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 Unknown 0 broad.mit.edu 37 19 54007225 54007225 + RNA SNP C T T novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 Unknown 0 broad.mit.edu 37 2 206981155 206981155 + RNA DEL C - - rs140143364 bycluster;by1000genomes TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118 Unknown 0 broad.mit.edu 37 3 22424176 22424176 + RNA DEL G - - novel TCGA-CJ-4637-01A-02D-1386-10 TCGA-CJ-4637-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b8480571-ee08-4fa1-b509-1331a8fbc075 c246767f-2df0-4836-b43f-a771f0782118