Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID A2ML1 144568 hgsc.bcm.edu 37 12 9016563 9016564 + Frame_Shift_Del DEL GC GC - rs144686314 by1000genomes TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 ACTRT1 139741 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 127185839 127185839 + Missense_Mutation SNP C C A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 ADCY9 115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4033433 4033433 + Missense_Mutation SNP C C A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 AIFM1 9131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129290574 129290574 + Missense_Mutation SNP T T G novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 AKAP1 8165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 55184285 55184285 + Missense_Mutation SNP G G A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 APLP1 333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36362632 36362632 + Missense_Mutation SNP C C A rs142658251 TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 ARFIP2 23647 broad.mit.edu;hgsc.bcm.edu 37 11 6499971 6499971 + Silent SNP A A T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 ATAD5 79915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29196281 29196281 + Missense_Mutation SNP T T C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108106450 108106450 + Nonsense_Mutation SNP A A T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A A T A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108216609 108216609 + Missense_Mutation SNP C C G rs141534716 alternate_allele TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 C2orf86 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63401948 63401948 + Missense_Mutation SNP G G C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 CACNA1C 775 hgsc.bcm.edu 37 12 2794977 2794977 + Silent SNP G G A rs56270948 TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 CENPH 64946 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 68505612 68505612 + Missense_Mutation SNP G G T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 COL3A1 1281 hgsc.bcm.edu;ucsc.edu 37 2 189856440 189856440 + Frame_Shift_Del DEL G G - novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 DNAH7 56171 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 196750888 196750888 + Nonsense_Mutation SNP G G A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 FIGNL2 401720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 52216199 52216199 + Silent SNP T T G novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 FLG2 388698 hgsc.bcm.edu 37 1 152327667 152327667 + Silent SNP C C T rs12738471 bycluster;byfrequency TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 GOT2 2806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58749998 58749998 + Silent SNP A A C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 GSK3A 2931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42736808 42736808 + Missense_Mutation SNP C C A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 HHIP 64399 broad.mit.edu;hgsc.bcm.edu 37 4 145655993 145655993 + Missense_Mutation SNP G G A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 IL13RA1 3597 hgsc.bcm.edu;ucsc.edu 37 X 117900881 117900882 + Frame_Shift_Ins INS - - AA novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 KIAA1109 84162 hgsc.bcm.edu;ucsc.edu 37 4 123265686 123265686 + Frame_Shift_Del DEL A A - novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 KIAA1267 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 44248335 44248335 + Missense_Mutation SNP C C G novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 KIAA1731 85459 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 93432025 93432025 + Missense_Mutation SNP T T A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 KLC3 147700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 45854226 45854226 + Missense_Mutation SNP T T G novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 LAP3 51056 hgsc.bcm.edu 37 4 17579091 17579091 + Missense_Mutation SNP G G A rs139709924 alternate_allele TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141128833 141128833 + Missense_Mutation SNP C C T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 MAP1B 4131 hgsc.bcm.edu;ucsc.edu 37 5 71489932 71489932 + Frame_Shift_Del DEL A A - novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 MCM2 4171 broad.mit.edu;hgsc.bcm.edu 37 3 127337930 127337930 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 MFHAS1 9258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8748320 8748320 + Missense_Mutation SNP T T C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 MFSD6L 162387 broad.mit.edu;hgsc.bcm.edu 37 17 8702333 8702333 + Missense_Mutation SNP G G A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 MMP17 4326 broad.mit.edu;hgsc.bcm.edu 37 12 132329961 132329961 + Missense_Mutation SNP C C T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 MUC17 140453 broad.mit.edu;hgsc.bcm.edu 37 7 100696341 100696341 + Missense_Mutation SNP G G A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 MUC4 4585 hgsc.bcm.edu 37 3 195515413 195515413 + Missense_Mutation SNP C C T rs55868431 TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 MUC4 4585 hgsc.bcm.edu 37 3 195515414 195515414 + Missense_Mutation SNP T T C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 NFATC1 4772 broad.mit.edu;hgsc.bcm.edu 37 18 77170523 77170523 + Missense_Mutation SNP C C T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 NLRP4 147945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56369989 56369989 + Missense_Mutation SNP C C A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 NUCKS1 64710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205696856 205696856 + Missense_Mutation SNP G G C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 OTOL1 131149 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 161221335 161221335 + Missense_Mutation SNP G G C rs182735973 by1000genomes;alternate_allele TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 PDLIM5 10611 hgsc.bcm.edu;ucsc.edu 37 4 95503859 95503859 + RNA SNP T T G novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 PFKFB3 5209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 6257233 6257233 + Silent SNP C C T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 POLG2 11232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 62492539 62492539 + Missense_Mutation SNP T T A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 POLI 11201 hgsc.bcm.edu 37 18 51795958 51795960 + In_Frame_Del DEL CGA CGA - rs10584411 bycluster;by1000genomes TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 CGA CGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 POU2F1 5451 broad.mit.edu;ucsc.edu 37 1 167365546 167365546 + Silent SNP G A A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 PTCHD2 57540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11594487 11594487 + Missense_Mutation SNP G G A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 PTCHD2 57540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11594488 11594488 + Silent SNP C C T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 PTPN13 5783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 87662970 87662970 + Splice_Site SNP G G T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 RBL2 5934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 53487478 53487478 + Missense_Mutation SNP A A C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 RBM12B 389677 broad.mit.edu;hgsc.bcm.edu 37 8 94746348 94746348 + Missense_Mutation SNP C C A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 RBM23 55147 hgsc.bcm.edu 37 14 23371265 23371265 + Silent SNP G G A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 RGS2 5997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 192780679 192780679 + Missense_Mutation SNP G G T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 SEMA4G 57715 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 102740600 102740600 + Missense_Mutation SNP C C T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 SLC17A2 10246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25913557 25913557 + Nonsense_Mutation SNP A A C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 SLC2A11 66035 hgsc.bcm.edu;ucsc.edu 37 22 24226035 24226036 + Frame_Shift_Ins INS - - C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 SMG5 23381 hgsc.bcm.edu 37 1 156252471 156252473 + Frame_Shift_Del DEL TGG TGG - novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 TGG TGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 SNX18 112574 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 53815390 53815390 + Silent SNP C C T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 SPOCK1 6695 broad.mit.edu;hgsc.bcm.edu 37 5 136448175 136448175 + Silent SNP C C A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 STAM 8027 hgsc.bcm.edu;ucsc.edu 37 10 17737083 17737085 + In_Frame_Del DEL TCA TCA - novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 TCA TCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 STX4 6810 hgsc.bcm.edu;ucsc.edu 37 16 31049919 31049919 + Missense_Mutation SNP G G A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 TAF4 6874 hgsc.bcm.edu;ucsc.edu 37 20 60574076 60574077 + Frame_Shift_Ins INS - - C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 TBL1X 6907 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 9677737 9677737 + Missense_Mutation SNP C C A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 TMEM144 55314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159138498 159138499 + Frame_Shift_Ins INS - - A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 TMPRSS13 84000 broad.mit.edu;ucsc.edu 37 11 117774795 117774795 + Missense_Mutation SNP C G G novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 TPRG1L 127262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 3545158 3545158 + Missense_Mutation SNP A A G novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 TRIM42 287015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 140401925 140401925 + Silent SNP C C T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19445444 19445444 + Missense_Mutation SNP T T G novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216019306 216019306 + Missense_Mutation SNP G G A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 VDR 7421 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48272814 48272814 + Missense_Mutation SNP C C G novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 XK 7504 broad.mit.edu;hgsc.bcm.edu 37 X 37586901 37586901 + Missense_Mutation SNP C C A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 ZACN 353174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74076506 74076506 + Splice_Site SNP G G A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 ZFP106 64397 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42744055 42744055 + Missense_Mutation SNP T T A novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 EP400NL 347918 broad.mit.edu 37 12 132611059 132611059 + RNA SNP G C C novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 MST1P9 0 broad.mit.edu 37 1 17084968 17084968 + Missense_Mutation SNP G C C rs57763054 bycluster;byfrequency TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 MUC4 4585 broad.mit.edu 37 3 195509498 195509498 + Missense_Mutation SNP C T T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 TUBBP5 643224 broad.mit.edu 37 9 141070687 141070687 + Silent SNP C T T novel TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2 Unknown 0 broad.mit.edu 37 17 20319816 20319816 + RNA SNP T C C rs71263794 TCGA-CJ-4639-01A-02D-1386-10 TCGA-CJ-4639-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9df6d1b1-5a09-4082-8ec0-61b12b3c8801 bb11b4d9-1656-4dd8-9916-c2a717201dc2