Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABRA 137735 hgsc.bcm.edu 37 8 107773283 107773283 + Silent SNP C C G novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 ADAMTS20 80070 hgsc.bcm.edu;ucsc.edu 37 12 43825222 43825222 + Silent SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 AKAP4 8852 hgsc.bcm.edu;ucsc.edu 37 X 49963344 49963344 + Silent SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 AKAP8L 26993 hgsc.bcm.edu;ucsc.edu 37 19 15511799 15511799 + Missense_Mutation SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 AP1G2 8906 hgsc.bcm.edu 37 14 24035342 24035342 + Missense_Mutation SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52442600 52442600 + Missense_Mutation SNP G G C novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 BCAN 63827 hgsc.bcm.edu 37 1 156622354 156622354 + Missense_Mutation SNP C C G novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 BCAR1 9564 hgsc.bcm.edu 37 16 75276448 75276448 + Missense_Mutation SNP C C A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 BPTF 2186 hgsc.bcm.edu;ucsc.edu 37 17 65942187 65942187 + Nonsense_Mutation SNP C C T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 C1orf55 0 hgsc.bcm.edu;ucsc.edu 37 1 226180618 226180618 + Silent SNP T T C novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 CAMKK2 10645 hgsc.bcm.edu;ucsc.edu 37 12 121698132 121698132 + Missense_Mutation SNP A A T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 CARKD 55739 hgsc.bcm.edu 37 13 111287086 111287086 + Missense_Mutation SNP C C A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 CDK12 51755 hgsc.bcm.edu 37 17 37618612 37618612 + Missense_Mutation SNP C C A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 CDK5RAP3 80279 hgsc.bcm.edu;ucsc.edu 37 17 46051372 46051372 + Missense_Mutation SNP G G T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 COL6A2 1292 hgsc.bcm.edu 37 21 47532722 47532722 + Missense_Mutation SNP A A T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 DENND4C 55667 hgsc.bcm.edu 37 9 19331996 19331996 + Missense_Mutation SNP A A T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 DTX1 1840 hgsc.bcm.edu 37 12 113531890 113531890 + Missense_Mutation SNP A A C novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 ELAVL4 1996 hgsc.bcm.edu 37 1 50666792 50666792 + Missense_Mutation SNP G G T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 ELFN2 114794 hgsc.bcm.edu 37 22 37769914 37769914 + Missense_Mutation SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 ERBB3 2065 hgsc.bcm.edu;ucsc.edu 37 12 56478808 56478808 + Silent SNP C C T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 FAAH2 158584 hgsc.bcm.edu 37 X 57358084 57358084 + Missense_Mutation SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 FAM129C 199786 hgsc.bcm.edu;ucsc.edu 37 19 17664214 17664214 + Missense_Mutation SNP A A T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 FAM75A3 0 hgsc.bcm.edu 37 9 40704227 40704227 + Silent SNP C T T rs67937937 bycluster TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 FAM83A 84985 hgsc.bcm.edu 37 8 124195554 124195554 + Missense_Mutation SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 FLAD1 80308 hgsc.bcm.edu 37 1 154960802 154960802 + Silent SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 GALNT2 2590 hgsc.bcm.edu;ucsc.edu 37 1 230410256 230410256 + Silent SNP G G C novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 ITGA6 3655 hgsc.bcm.edu;ucsc.edu 37 2 173356019 173356019 + Missense_Mutation SNP T T C novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 KIAA0430 9665 hgsc.bcm.edu;ucsc.edu 37 16 15690639 15690639 + Missense_Mutation SNP C C A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 KIAA1632 0 hgsc.bcm.edu;ucsc.edu 37 18 43523194 43523194 + Missense_Mutation SNP C C T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 KRT6C 286887 hgsc.bcm.edu 37 12 52863663 52863663 + Silent SNP C C T rs11540291 TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 MIA3 375056 hgsc.bcm.edu;ucsc.edu 37 1 222826679 222826679 + Missense_Mutation SNP G G C novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 MYNN 55892 hgsc.bcm.edu 37 3 169504386 169504386 + Missense_Mutation SNP C C G novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 NBPF3 84224 hgsc.bcm.edu 37 1 21806704 21806704 + Missense_Mutation SNP C C G novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 NEK10 152110 hgsc.bcm.edu 37 3 27350480 27350480 + Missense_Mutation SNP A A T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 NUF2 83540 hgsc.bcm.edu;ucsc.edu 37 1 163297295 163297295 + Missense_Mutation SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 OR7D2 162998 hgsc.bcm.edu;ucsc.edu 37 19 9296955 9296955 + Silent SNP A A G novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 OSCAR 126014 hgsc.bcm.edu 37 19 54600307 54600307 + Missense_Mutation SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 PARP10 84875 hgsc.bcm.edu 37 8 145057868 145057868 + Missense_Mutation SNP A A G rs11544989 bycluster;byfrequency;by1000genomes TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 PDE6C 5146 hgsc.bcm.edu;ucsc.edu 37 10 95372619 95372619 + Missense_Mutation SNP C C A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 PKN1 5585 hgsc.bcm.edu;ucsc.edu 37 19 14580588 14580588 + Silent SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 PPEF2 5470 hgsc.bcm.edu 37 4 76797629 76797629 + Silent SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 PRKDC 5591 hgsc.bcm.edu 37 8 48711870 48711870 + Missense_Mutation SNP A A T novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 PTGFR 5737 hgsc.bcm.edu 37 1 78958515 78958515 + Silent SNP C C A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 PTPRB 5787 hgsc.bcm.edu 37 12 70960250 70960250 + Missense_Mutation SNP A A G novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 A A . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 RBBP6 5930 hgsc.bcm.edu;ucsc.edu 37 16 24581248 24581248 + Missense_Mutation SNP G G C novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 RPN1 6184 hgsc.bcm.edu 37 3 128356662 128356662 + Missense_Mutation SNP C C A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 SCARB1 949 hgsc.bcm.edu;ucsc.edu 37 12 125279747 125279747 + Missense_Mutation SNP C C A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 SENP8 123228 hgsc.bcm.edu;ucsc.edu 37 15 72432093 72432093 + Missense_Mutation SNP G G C novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 SLU7 10569 hgsc.bcm.edu;ucsc.edu 37 5 159833540 159833540 + Missense_Mutation SNP T T G novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 TNFRSF21 27242 hgsc.bcm.edu;ucsc.edu 37 6 47251933 47251933 + Silent SNP G G A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 G G . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 USP9X 8239 hgsc.bcm.edu;ucsc.edu 37 X 41077774 41077774 + Missense_Mutation SNP T T C novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 T T . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7 ZMAT5 55954 hgsc.bcm.edu 37 22 30134342 30134342 + Silent SNP C C A novel TCGA-CJ-4881-01A-01D-1373-10 TCGA-CJ-4881-11A-01D-1373-10 C C . . . . Unknown Untested Somatic Phase_I WXS none SOLID ae20e2d0-5d39-4a94-a9ff-dee71503cbfe 290dd57c-0f01-431d-8b72-5f25f1a00ca7