Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID A2M 2 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9225307 9225307 + Missense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ABL1 25 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133750263 133750263 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ADAMTS2 9509 broad.mit.edu;hgsc.bcm.edu 37 5 178771139 178771139 + Missense_Mutation SNP C C G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ADAR 103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154574246 154574246 + Missense_Mutation SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe AHCTF1 25909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 247061603 247061603 + Silent SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ALDH1B1 219 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 38395753 38395753 + Missense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ALG13 79868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 110964871 110964871 + Missense_Mutation SNP T T A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ANKK1 255239 broad.mit.edu;hgsc.bcm.edu 37 11 113270032 113270032 + Silent SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ANKRD50 57182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 125631599 125631599 + Missense_Mutation SNP A A C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe APOBEC1 339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7802168 7802168 + Missense_Mutation SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ARFGEF1 10565 hgsc.bcm.edu;ucsc.edu 37 8 68137214 68137214 + Frame_Shift_Del DEL A A - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ARID5A 10865 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97217964 97217964 + Missense_Mutation SNP C C A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ARMCX5 64860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 101857826 101857826 + Missense_Mutation SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ARMCX6 54470 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100871360 100871360 + Missense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ATP10D 57205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 47559972 47559972 + Missense_Mutation SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ATP13A1 57130 broad.mit.edu;hgsc.bcm.edu 37 19 19767887 19767887 + Silent SNP C C A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ATP1A4 480 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160151511 160151511 + Missense_Mutation SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe AXIN1 8312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 396564 396564 + Silent SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe BAT1 0 broad.mit.edu;hgsc.bcm.edu 37 6 31507024 31507024 + Missense_Mutation SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe BCKDK 10295 hgsc.bcm.edu;ucsc.edu 37 16 31123280 31123280 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe BCL11B 64919 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 99640573 99640573 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe C11orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 33565649 33565649 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe C15orf40 123207 hgsc.bcm.edu 37 15 83677271 83677271 + Frame_Shift_Del DEL A A - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe C1orf14 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 182908433 182908433 + Missense_Mutation SNP A A C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe C9orf5 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 111855820 111855820 + Missense_Mutation SNP T T G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CAMTA2 23125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4872277 4872277 + Splice_Site SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CANX 821 broad.mit.edu;hgsc.bcm.edu 37 5 179149818 179149818 + Missense_Mutation SNP C C A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CASQ2 845 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 116243998 116243998 + Missense_Mutation SNP G G C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CCDC116 164592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 21989453 21989453 + Silent SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CCT8 10694 broad.mit.edu;hgsc.bcm.edu 37 21 30442596 30442596 + Missense_Mutation SNP T T A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CDH6 1004 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 31299715 31299715 + Missense_Mutation SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CDKL5 6792 broad.mit.edu;ucsc.edu 37 X 18622812 18622812 + Missense_Mutation SNP G A A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CDX1 1044 broad.mit.edu;hgsc.bcm.edu 37 5 149563073 149563073 + Missense_Mutation SNP C C G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CEBPG 1054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 33870405 33870405 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238280464 238280464 + Missense_Mutation SNP C C A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe COQ5 84274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120954469 120954469 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CRYGB 1419 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 209007637 209007637 + Missense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CSPG4 1464 hgsc.bcm.edu 37 15 75982360 75982360 + Missense_Mutation SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CYP19A1 1588 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51514629 51514629 + Missense_Mutation SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe CYP2C19 1557 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 96580386 96580386 + Missense_Mutation SNP A A C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe DEM1 0 hgsc.bcm.edu;ucsc.edu 37 1 40980774 40980783 + Frame_Shift_Del DEL TACAGCCAAG TACAGCCAAG - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 TACAGCCAAG TACAGCCAAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe DOCK7 85440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62973695 62973695 + Missense_Mutation SNP C C A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe DOPEY2 9980 hgsc.bcm.edu;ucsc.edu 37 21 37617853 37617854 + Frame_Shift_Del DEL TC TC - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe DPPA2 151871 hgsc.bcm.edu;ucsc.edu 37 3 109031497 109031503 + Frame_Shift_Del DEL AAATCAC AAATCAC - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 AAATCAC AAATCAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe DUS2L 54920 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 68071947 68071947 + Silent SNP T T A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe EFR3A 23167 broad.mit.edu;hgsc.bcm.edu 37 8 132956999 132956999 + Missense_Mutation SNP T T G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe EIF2AK2 5610 broad.mit.edu;ucsc.edu 37 2 37366825 37366825 + Missense_Mutation SNP T G G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe EIF4G1 1981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184049812 184049812 + Missense_Mutation SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ELMOD3 84173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 85598666 85598666 + Missense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe EMILIN2 84034 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 2890714 2890714 + Missense_Mutation SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe EML5 161436 broad.mit.edu;hgsc.bcm.edu 37 14 89202708 89202708 + Missense_Mutation SNP C C G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ENPP3 5169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131995388 131995388 + Silent SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe EPB41L4B 54566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 111979310 111979310 + Missense_Mutation SNP G G C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe EPHX1 2052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 226027665 226027665 + Silent SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ETV3 2117 broad.mit.edu;hgsc.bcm.edu 37 1 157105442 157105442 + Silent SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe FAM123C 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 131521736 131521736 + Silent SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe FAM178A 55719 hgsc.bcm.edu 37 10 102676847 102676847 + Missense_Mutation SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe FAM178A 55719 hgsc.bcm.edu;ucsc.edu 37 10 102676845 102676845 + Frame_Shift_Del DEL A A - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe FAM190B 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 86130950 86130950 + Frame_Shift_Del DEL A A - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe FAM19A4 151647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 68788346 68788346 + Silent SNP G G C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe FAM5B 57795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 177249817 177249817 + Missense_Mutation SNP T T C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe FRYL 285527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 48566087 48566087 + Missense_Mutation SNP C C G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe FTSJ3 117246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61898808 61898808 + Frame_Shift_Del DEL A A - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe GABRE 2564 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151123262 151123262 + Missense_Mutation SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe GNA13 10672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 63010386 63010386 + Missense_Mutation SNP T T G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe GPATCH2 55105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 217665062 217665062 + Missense_Mutation SNP T T C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe GPR133 283383 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 131616270 131616270 + Missense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe GRAMD1A 57655 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 35501012 35501012 + Silent SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe GSPT1 2935 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 11971401 11971401 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe HIVEP1 3096 hgsc.bcm.edu;ucsc.edu 37 6 12161803 12161803 + Frame_Shift_Del DEL C C - rs34103769 TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe HJURP 55355 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234754423 234754423 + Missense_Mutation SNP T T A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe HSP90AA1 3320 broad.mit.edu;hgsc.bcm.edu 37 14 102552583 102552583 + Missense_Mutation SNP G G C rs11547522 alternate_allele TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe HSPH1 10808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 31729705 31729705 + Missense_Mutation SNP C C G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe HTR2C 3358 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 113965887 113965887 + Missense_Mutation SNP G G C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe INTS8 55656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 95861709 95861709 + Missense_Mutation SNP A A C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe IRAK1 3654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153278674 153278674 + Missense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe KCNJ18 100134444 hgsc.bcm.edu 37 17 21318760 21318760 + Missense_Mutation SNP G G T rs74880280 bycluster;byfrequency TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe KIAA0913 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75556685 75556685 + Missense_Mutation SNP T T C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe KIAA1409 0 broad.mit.edu;hgsc.bcm.edu 37 14 94129061 94129061 + Splice_Site SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe KIF27 55582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 86518027 86518027 + Missense_Mutation SNP C C A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe LONRF3 79836 broad.mit.edu;hgsc.bcm.edu 37 X 118108850 118108850 + Missense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe LRP2 4036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170103247 170103247 + Missense_Mutation SNP T T A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe MAGEE1 57692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 75650469 75650469 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe MAP3K1 4214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 56160679 56160679 + Nonsense_Mutation SNP T T G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe MARS2 92935 hgsc.bcm.edu 37 2 198570416 198570416 + Missense_Mutation SNP G G C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe MCCC1 56922 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 182759359 182759359 + Silent SNP C C G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe MFN1 55669 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 179096586 179096586 + Nonsense_Mutation SNP C C A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe MFSD7 84179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 677418 677418 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe MKRN3 7681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 23811293 23811293 + Missense_Mutation SNP T T A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe MYH14 79784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50753042 50753042 + Missense_Mutation SNP C C G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe MYO9B 4650 hgsc.bcm.edu 37 19 17311226 17311226 + Missense_Mutation SNP G G A rs117099942 byfrequency;by1000genomes TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe N4BP2L2 10443 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 33110320 33110320 + Missense_Mutation SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe NACA 4666 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57114669 57114669 + Missense_Mutation SNP G G C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe NALCN 259232 hgsc.bcm.edu;ucsc.edu 37 13 101797201 101797201 + Frame_Shift_Del DEL A A - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe NCAPG2 54892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 158447311 158447311 + Silent SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe NLRP4 147945 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56369055 56369055 + Missense_Mutation SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe NOTCH2 4853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120462002 120462002 + Missense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe NPHS1 4868 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36340513 36340513 + Missense_Mutation SNP A A C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe NR3C2 4306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 149356735 149356735 + Silent SNP T T G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe OGFOD1 55239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 56485531 56485531 + Missense_Mutation SNP G G C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe OGG1 4968 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 9792055 9792055 + Missense_Mutation SNP C C A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe OR52L1 338751 broad.mit.edu;hgsc.bcm.edu 37 11 6007950 6007950 + Missense_Mutation SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe OSTalpha 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 195954575 195954575 + Missense_Mutation SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PAPPA 5069 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 118982390 118982390 + Missense_Mutation SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PBRM1 55193 hgsc.bcm.edu;ucsc.edu 37 3 52651349 52651353 + Frame_Shift_Del DEL CACCA CACCA - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 CACCA CACCA CACCA - CACCA CACCA Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PCDH11X 27328 broad.mit.edu;hgsc.bcm.edu 37 X 91873325 91873325 + Missense_Mutation SNP C C A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PDIA2 64714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 336870 336870 + Silent SNP T T A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PMP22 5376 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 15142905 15142905 + Missense_Mutation SNP T T C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PRDM12 59335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 133542139 133542139 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PRTG 283659 hgsc.bcm.edu;ucsc.edu 37 15 55971529 55971529 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PTK7 5754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43107181 43107181 + Missense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PTPN18 26469 hgsc.bcm.edu;ucsc.edu 37 2 131128292 131128292 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PTPN3 5774 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 112172526 112172526 + Nonsense_Mutation SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe PTPRZ1 5803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 121650685 121650685 + Missense_Mutation SNP C C G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe QSER1 79832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 32955024 32955024 + Silent SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe RAD51 5888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 41022091 41022091 + Missense_Mutation SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe RECQL5 9400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73657711 73657711 + Silent SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe RIMS4 140730 broad.mit.edu;hgsc.bcm.edu 37 20 43386410 43386410 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe RPH3AL 9501 broad.mit.edu;hgsc.bcm.edu 37 17 169255 169255 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe RYR2 6262 broad.mit.edu;hgsc.bcm.edu 37 1 237586481 237586481 + Missense_Mutation SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe SART3 9733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 108929135 108929136 + Frame_Shift_Ins INS - - T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe SBF1 6305 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50903133 50903133 + Missense_Mutation SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe SCARNA9 619383 broad.mit.edu;hgsc.bcm.edu 37 11 93454688 93454688 + RNA SNP G G C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe SCN11A 11280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 38962724 38962724 + Silent SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe SEMA4A 64218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156127886 156127886 + Missense_Mutation SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe SLC16A4 9122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 110906399 110906399 + Missense_Mutation SNP T T C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe SMC1A 8243 hgsc.bcm.edu;ucsc.edu 37 X 53430820 53430820 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe SNW1 22938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 78184796 78184796 + Silent SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ST6GAL2 84620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 107460175 107460175 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ST6GALNAC3 256435 hgsc.bcm.edu;ucsc.edu 37 1 77094481 77094482 + Frame_Shift_Ins INS - - A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe SULF1 23213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 70514054 70514054 + Missense_Mutation SNP C C G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe SULT2A1 6822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 48385434 48385434 + Silent SNP A A G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe TANC2 26115 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61498351 61498351 + Missense_Mutation SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe TECRL 253017 broad.mit.edu;hgsc.bcm.edu 37 4 65274893 65274893 + Silent SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe TFDP3 51270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132351883 132351883 + Silent SNP G G A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe THAP9 79725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83838940 83838940 + Missense_Mutation SNP C C G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe TMPRSS15 5651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 19698767 19698767 + Missense_Mutation SNP A A T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe TRPM6 140803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 77435329 77435329 + Missense_Mutation SNP T T G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe TTC12 54970 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 113230094 113230094 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179490104 179490104 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe UROC1 131669 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 126216954 126216954 + Missense_Mutation SNP C C T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe WDR72 256764 hgsc.bcm.edu;ucsc.edu 37 15 53907894 53907895 + Frame_Shift_Ins INS - - TTCAT novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe WNK1 65125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 862733 862733 + Missense_Mutation SNP T T A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ZAK 51776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 174131419 174131419 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe AZI1 22994 broad.mit.edu 37 17 79169644 79169644 + Missense_Mutation SNP C A A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe DDX12 0 broad.mit.edu 37 12 9573258 9573258 + Missense_Mutation SNP C A A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe DYNC2H1 79659 broad.mit.edu 37 11 103093809 103093809 + Nonsense_Mutation SNP T G G novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe GUSBP1 728411 broad.mit.edu 37 5 21459810 21459810 + Missense_Mutation SNP C A A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe KRTAP5-4 387267 broad.mit.edu 37 11 1643006 1643006 + Silent SNP G C C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe POLQ 10721 broad.mit.edu 37 3 121263752 121263752 + Silent SNP T C C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe TFE3 7030 broad.mit.edu 37 X 48900725 48900725 + Missense_Mutation SNP C A A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe Unknown 0 broad.mit.edu 37 17 18333107 18333107 + RNA SNP G C C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe Unknown 0 broad.mit.edu 37 4 120116717 120116717 + Missense_Mutation SNP C A A rs149257591 by1000genomes;alternate_allele TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe VHL 7428 broad.mit.edu 37 3 10183725 10183725 + Missense_Mutation SNP C T T rs5030826 alternate_allele TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 C C C T C C Unknown Valid Somatic Phase_I WXS Illumina Miseq Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe YME1L1 10730 broad.mit.edu 37 10 27437893 27437893 + Missense_Mutation SNP G A A novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe ZER1 10444 broad.mit.edu 37 9 131514950 131514950 + Splice_Site SNP A C C novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe MSR1 4481 broad.mit.edu 37 8 16026114 16026114 + Silent SNP G T T novel TCGA-CJ-4920-01A-01D-1429-08 TCGA-CJ-4920-11A-01D-1429-08 G G G T G G Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx 12bf3338-f541-45a9-9fb7-e84931ba5ed8 3879491a-93eb-40d1-83ba-d90b98dabffe