Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCG8 64241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44073354 44073354 + Missense_Mutation SNP A A G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 ACSBG2 81616 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6182803 6182803 + Silent SNP C C T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 ACTL9 284382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8807932 8807932 + Missense_Mutation SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 AIFM1 9131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129289191 129289191 + Silent SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 APBB2 323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 41015685 41015685 + Silent SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 ATP5B 506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 57036241 57036241 + Splice_Site SNP C C A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 ATP8B3 148229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1811645 1811645 + Missense_Mutation SNP A A T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76952169 76952169 + Missense_Mutation SNP T T A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 AVL9 23080 hgsc.bcm.edu;ucsc.edu 37 7 32584314 32584314 + Frame_Shift_Del DEL T T - novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 B3GAT3 26229 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 62384532 62384532 + Missense_Mutation SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 BAZ1A 11177 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 35264070 35264070 + Silent SNP C C A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 BDKRB2 624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 96703508 96703508 + Missense_Mutation SNP G G T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 BRPF3 27154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 36177669 36177669 + Missense_Mutation SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 BZRAP1 9256 hgsc.bcm.edu 37 17 56386383 56386384 + Frame_Shift_Ins INS - - T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 C20orf165 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 44515557 44515557 + Missense_Mutation SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 C20orf24 55969 broad.mit.edu;ucsc.edu 37 20 35238021 35238021 + Missense_Mutation SNP C T T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 C2CD3 26005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73753116 73753116 + Silent SNP G G T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 C4orf41 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 184618916 184618916 + Missense_Mutation SNP A A G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 CD101 9398 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 117568204 117568204 + Silent SNP C C T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 CDC23 8697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 137542357 137542357 + Missense_Mutation SNP A A G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 CNTN2 6900 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205035032 205035032 + Missense_Mutation SNP T T A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 DET1 55070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 89070834 89070834 + Missense_Mutation SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 DPY19L1 23333 broad.mit.edu;ucsc.edu 37 7 35057549 35057549 + Missense_Mutation SNP C G G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 FAM83C 128876 hgsc.bcm.edu;ucsc.edu 37 20 33875097 33875099 + In_Frame_Del DEL CTT CTT - novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 FMN2 56776 hgsc.bcm.edu 37 1 240371075 240371075 + Missense_Mutation SNP C C T rs71646825 bycluster;by1000genomes TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 FNIP2 57600 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 159790324 159790324 + Missense_Mutation SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 GAA 2548 broad.mit.edu;hgsc.bcm.edu 37 17 78090845 78090845 + Silent SNP C C T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 GABRB1 2560 hgsc.bcm.edu;ucsc.edu 37 4 47408773 47408774 + Frame_Shift_Del DEL AA AA - novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 AA AA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 GATA2 2624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128200752 128200753 + Frame_Shift_Ins INS - - T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 GPRIN3 285513 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 90170546 90170546 + Missense_Mutation SNP G G T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 HDAC6 10013 hgsc.bcm.edu;ucsc.edu 37 X 48674608 48674608 + Silent SNP C C T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 HHIP 64399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 145635414 145635414 + Silent SNP T T C novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 IARS 3376 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95021264 95021264 + Missense_Mutation SNP A A T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 IL23R 149233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67705899 67705899 + Missense_Mutation SNP C C G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 INADL 10207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 62237112 62237112 + Silent SNP A A G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 INMT-FAM188B 100526825 broad.mit.edu;hgsc.bcm.edu 37 7 30931623 30931623 + RNA SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 INTS6 26512 broad.mit.edu;hgsc.bcm.edu 37 13 51969612 51969612 + Missense_Mutation SNP A A G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 KHK 3795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 27317803 27317803 + Splice_Site SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 KIAA0586 9786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 58932590 58932590 + Missense_Mutation SNP C C G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 KLF11 8462 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 10186515 10186515 + Missense_Mutation SNP T T C novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 LACRT 90070 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 55026040 55026040 + Nonsense_Mutation SNP C C A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 LAMC2 3918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183177097 183177097 + Missense_Mutation SNP T T A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 LAMC2 3918 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 183177098 183177098 + Silent SNP C C A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 MMP2 4313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 55519326 55519326 + Silent SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 MORC3 23515 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 37736413 37736413 + Missense_Mutation SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11210198 11210198 + Missense_Mutation SNP C C T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 MUC16 94025 hgsc.bcm.edu;ucsc.edu 37 19 9075200 9075200 + Missense_Mutation SNP A A T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 NBEAL1 65065 broad.mit.edu;ucsc.edu 37 2 204045216 204045217 + Frame_Shift_Del DEL GT - - novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 GT GT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 NEBL 10529 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 21124510 21124510 + Nonsense_Mutation SNP C C A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 NEDD9 4739 broad.mit.edu;ucsc.edu 37 6 11213548 11213548 + Missense_Mutation SNP A G G rs111447705 TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 NR4A3 8013 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 102590586 102590586 + Nonsense_Mutation SNP G G T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 ODZ4 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 78369131 78369131 + Missense_Mutation SNP A A G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 OPN4 94233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 88418429 88418429 + Missense_Mutation SNP C C A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 OR7G3 390883 hgsc.bcm.edu 37 19 9236698 9236699 + Frame_Shift_Ins INS - - ATGGT rs111867493 bycluster;by1000genomes TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PAPOLA 10914 broad.mit.edu;ucsc.edu 37 14 97022676 97022676 + Missense_Mutation SNP A G G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PAX4 5078 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127252031 127252031 + Missense_Mutation SNP G G T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PCDHGB1 56104 broad.mit.edu;ucsc.edu 37 5 140732064 140732064 + Missense_Mutation SNP A C C novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PCSK9 255738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55509579 55509579 + Missense_Mutation SNP T T A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PCSK9 255738 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 55509580 55509580 + Missense_Mutation SNP C C T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PHACTR4 65979 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 28800469 28800469 + Silent SNP C C A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PKD1L1 168507 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 47873983 47873983 + Missense_Mutation SNP C C A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PKN2 5586 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 89236095 89236095 + Missense_Mutation SNP G G T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PLA2G4D 283748 broad.mit.edu;ucsc.edu 37 15 42379578 42379578 + Missense_Mutation SNP A G G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PLEC 5339 broad.mit.edu;hgsc.bcm.edu 37 8 144999885 144999885 + Silent SNP C C G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PPIE 10450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 40209514 40209514 + Missense_Mutation SNP G G T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PPIP5K2 23262 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 102502993 102502993 + Missense_Mutation SNP C C G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 PROCR 10544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33763988 33763988 + Missense_Mutation SNP T T A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 RABAC1 10567 broad.mit.edu;ucsc.edu 37 19 42462491 42462491 + Missense_Mutation SNP C T T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 RASGRF2 5924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 80508333 80508333 + Missense_Mutation SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 RBM7 10179 broad.mit.edu;hgsc.bcm.edu 37 11 114272549 114272549 + Missense_Mutation SNP T T C novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 S100A7A 338324 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 153391770 153391770 + Silent SNP T T C novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 SCARB2 950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 77084506 77084506 + Nonsense_Mutation SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 SH3GLB1 51100 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 87200796 87200796 + Missense_Mutation SNP A A T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 SMARCAL1 50485 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 217342998 217342998 + Silent SNP A A G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 SPTBN4 57731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 41066216 41066216 + Missense_Mutation SNP C C G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 TECTB 6975 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 114053509 114053509 + Missense_Mutation SNP C C G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 VHL 7428 broad.mit.edu;hgsc.bcm.edu 37 3 10183797 10183797 + Missense_Mutation SNP T T C rs5030807 bycluster TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 YIF1A 10897 hgsc.bcm.edu;ucsc.edu 37 11 66052992 66052996 + Frame_Shift_Del DEL CACCT CACCT - novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 CACCT CACCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 ZFR 51663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 32390443 32390443 + Missense_Mutation SNP G G C novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 ZNF45 7596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44418082 44418082 + Silent SNP G G A rs142171881 bycluster;byfrequency;by1000genomes TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 ZPBP2 124626 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38031594 38031594 + Missense_Mutation SNP G G A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 ZSCAN1 284312 broad.mit.edu;hgsc.bcm.edu 37 19 58549265 58549265 + Nonsense_Mutation SNP G G T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 FKBP9L 360132 broad.mit.edu 37 7 55755510 55755510 + Missense_Mutation SNP A G G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 LMOD1 25802 broad.mit.edu 37 1 201869657 201869657 + Missense_Mutation SNP G A A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 LOC284232 0 broad.mit.edu 37 13 19412668 19412668 + RNA SNP C T T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 NYX 60506 broad.mit.edu 37 X 41333572 41333572 + Missense_Mutation SNP G A A novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 SLC22A4 6583 broad.mit.edu 37 5 131630693 131630693 + Silent SNP C T T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 TSGA10IP 254187 broad.mit.edu 37 11 65715209 65715209 + Nonsense_Mutation SNP C T T novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0 Unknown 0 broad.mit.edu 37 15 76074470 76074470 + Missense_Mutation SNP A G G novel TCGA-CJ-6027-01A-11D-1669-08 TCGA-CJ-6027-11A-01D-1669-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b0483455-4cde-408f-b831-17223c03241a 8a6d1d13-52dd-44de-9bba-95cbb12056a0