Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAR 103 broad.mit.edu;hgsc.bcm.edu 37 1 154569310 154569310 + Silent SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 AHNAK 79026 hgsc.bcm.edu 37 11 62296231 62296231 + Silent SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ALPPL2 251 hgsc.bcm.edu 37 2 233273011 233273011 + Missense_Mutation SNP C C G rs75920311 bycluster;byfrequency TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ANKRD36 375248 broad.mit.edu;hgsc.bcm.edu 37 2 97849372 97849372 + Silent SNP T T C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 AQP7 364 hgsc.bcm.edu 37 9 33386465 33386465 + Missense_Mutation SNP A A G rs74668961 TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 AQP7 364 hgsc.bcm.edu 37 9 33386469 33386469 + Silent SNP C C T rs78695486 TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ARHGAP36 158763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 130218268 130218268 + Missense_Mutation SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ASXL2 55252 hgsc.bcm.edu;ucsc.edu 37 2 26068366 26068368 + In_Frame_Del DEL CTT CTT - novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 BHMT 635 broad.mit.edu;hgsc.bcm.edu 37 5 78423703 78423703 + Missense_Mutation SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 BLM 641 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91292947 91292947 + Missense_Mutation SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 C12orf40 283461 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 40076779 40076779 + Silent SNP A A T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 C14orf39 317761 broad.mit.edu;hgsc.bcm.edu 37 14 60932762 60932762 + Missense_Mutation SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 C4orf21 55345 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 113468532 113468532 + Missense_Mutation SNP T T A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 C5orf60 285679 hgsc.bcm.edu 37 5 179071810 179071812 + In_Frame_Del DEL TCC TCC - rs151013485 by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 TCC TCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 CA9 768 hgsc.bcm.edu 37 9 35674204 35674204 + Missense_Mutation SNP T T C rs146966274 by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 CCRN4L 25819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 139966122 139966122 + Missense_Mutation SNP C C G novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 CD97 976 broad.mit.edu;hgsc.bcm.edu 37 19 14507236 14507236 + Missense_Mutation SNP G G C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 CEP70 80321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 138216885 138216885 + Missense_Mutation SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 CLASRP 11129 hgsc.bcm.edu 37 19 45571279 45571280 + Frame_Shift_Ins INS - - C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 CYP4B1 1580 hgsc.bcm.edu;ucsc.edu 37 1 47282767 47282767 + Missense_Mutation SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 DDHD1 80821 hgsc.bcm.edu 37 14 53558606 53558608 + In_Frame_Del DEL CTT CTT - novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 DDX17 10521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 38889717 38889717 + Missense_Mutation SNP T T C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 DHX29 54505 broad.mit.edu;hgsc.bcm.edu 37 5 54579538 54579538 + Silent SNP T T C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 EIF4G3 8672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21167484 21167484 + Missense_Mutation SNP C C A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 FAM193A 8603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2733519 2733519 + Missense_Mutation SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 FAM193B 54540 broad.mit.edu;hgsc.bcm.edu 37 5 176951610 176951610 + Silent SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 FAM45A 404636 broad.mit.edu;hgsc.bcm.edu 37 10 120871395 120871395 + Missense_Mutation SNP A A C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 FLAD1 80308 broad.mit.edu;ucsc.edu 37 1 154956241 154956241 + Nonsense_Mutation SNP T A A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 GALNT7 51809 hgsc.bcm.edu;ucsc.edu 37 4 174090012 174090013 + Frame_Shift_Ins INS - - AA novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 GLP1R 2740 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 39025301 39025301 + Missense_Mutation SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 GPR37L1 9283 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202092521 202092521 + Missense_Mutation SNP G G T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 HECW2 57520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 197194348 197194348 + Silent SNP A A T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 HIST1H2BM 8342 hgsc.bcm.edu;ucsc.edu 37 6 27782975 27782975 + Frame_Shift_Del DEL G G - novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 IGFN1 91156 hgsc.bcm.edu 37 1 201179954 201179954 + Missense_Mutation SNP A A C rs77885442 TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 IGFN1 91156 hgsc.bcm.edu 37 1 201180140 201180140 + Missense_Mutation SNP C C T rs58792551 byfrequency TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ITGB1 3688 hgsc.bcm.edu 37 10 33217098 33217098 + Silent SNP G G A rs35057436 bycluster;byfrequency;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ITPR1 3708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 4669521 4669521 + Missense_Mutation SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 LONRF1 91694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 12586770 12586770 + Missense_Mutation SNP A A C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MAGEC1 9947 hgsc.bcm.edu;ucsc.edu 37 X 140993716 140993716 + Missense_Mutation SNP G G C rs78700965 bycluster;byfrequency TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MAS1L 116511 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 29454618 29454618 + Silent SNP T T A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MED26 9441 broad.mit.edu;ucsc.edu 37 19 16687395 16687395 + Missense_Mutation SNP T G G novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MUC4 4585 hgsc.bcm.edu 37 3 195512302 195512302 + Missense_Mutation SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MUC6 4588 hgsc.bcm.edu 37 11 1018095 1018095 + Missense_Mutation SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MUC6 4588 hgsc.bcm.edu 37 11 1018555 1018555 + Missense_Mutation SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MYO16 23026 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 109535457 109535457 + Silent SNP T T C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 NOP56 10528 broad.mit.edu;hgsc.bcm.edu 37 20 2637491 2637491 + Missense_Mutation SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 OR2T12 127064 broad.mit.edu;hgsc.bcm.edu 37 1 248458390 248458390 + Missense_Mutation SNP A A G novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 OR2T4 127074 hgsc.bcm.edu 37 1 248525328 248525329 + Frame_Shift_Ins INS - - TA rs61248663 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 OR4A5 81318 hgsc.bcm.edu;ucsc.edu 37 11 51411740 51411740 + Missense_Mutation SNP A A G rs35083184 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 OR5AU1 390445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 21624096 21624096 + Missense_Mutation SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 OR5H6 79295 hgsc.bcm.edu;ucsc.edu 37 3 97983488 97983496 + In_Frame_Del DEL TGTAACCAC TGTAACCAC - rs139831483 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 TGTAACCAC TGTAACCAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 PCMTD1 115294 hgsc.bcm.edu 37 8 52733055 52733055 + Silent SNP C C T rs117334240 TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 PDZD8 118987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 119044693 119044693 + Silent SNP T T C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 PRDM10 56980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 129794821 129794821 + Missense_Mutation SNP A A G novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 PRR21 643905 hgsc.bcm.edu 37 2 240982052 240982052 + Silent SNP C C G rs77588089 bycluster TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 RBM20 282996 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 112572492 112572492 + Silent SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 RETNLB 84666 hgsc.bcm.edu;ucsc.edu 37 3 108475993 108475994 + Frame_Shift_Del INS - - GGGGATTA rs5851607 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 RIMS3 9783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 41092246 41092246 + Silent SNP G G T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 RIOK1 83732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 7395314 7395314 + Missense_Mutation SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 RP1L1 94137 hgsc.bcm.edu 37 8 10466019 10466019 + Silent SNP A A T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 RTKN2 219790 hgsc.bcm.edu;ucsc.edu 37 10 63976913 63976918 + In_Frame_Del DEL AGCTTC AGCTTC - rs149331212 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 AGCTTC AGCTTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 SCGN 10590 broad.mit.edu;hgsc.bcm.edu 37 6 25670266 25670266 + Missense_Mutation SNP A A C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 SETX 23064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 135173490 135173490 + Silent SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 SLC39A12 221074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 18276482 18276482 + Missense_Mutation SNP C C A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 STAB2 55576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 104062492 104062492 + Nonsense_Mutation SNP C C A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 TMTC1 83857 broad.mit.edu;hgsc.bcm.edu 37 12 29709847 29709847 + Missense_Mutation SNP G G T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 TMTC2 160335 broad.mit.edu;hgsc.bcm.edu 37 12 83290207 83290207 + Missense_Mutation SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 TTBK2 146057 broad.mit.edu;hgsc.bcm.edu 37 15 43102877 43102877 + Missense_Mutation SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191492 10191492 + Missense_Mutation SNP G G A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 VSIG10L 147645 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51845047 51845047 + Silent SNP C C G novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 XIRP2 129446 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 168103910 168103910 + Missense_Mutation SNP A A T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 YES1 7525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 743325 743325 + Missense_Mutation SNP A A C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ZFYVE26 23503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68249593 68249593 + Missense_Mutation SNP A A T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ZFYVE26 23503 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68249594 68249594 + Missense_Mutation SNP A A T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ZMYM2 7750 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20657807 20657807 + Missense_Mutation SNP A A G novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ZNF193 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28195519 28195519 + Missense_Mutation SNP C C G novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ZNF665 79788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53668352 53668352 + Missense_Mutation SNP C C T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ADAM6 8755 broad.mit.edu 37 14 106919168 106919168 + RNA DEL C - - rs139643696 bycluster;by1000genomes TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ADAM6 8755 broad.mit.edu 37 14 106919176 106919177 + RNA INS - TG TG novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ATP5EP2 432369 broad.mit.edu 37 13 28519646 28519646 + RNA DEL A - - novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 FLJ12825 440101 broad.mit.edu 37 12 54515418 54515418 + RNA SNP C T T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 FLJ40330 0 broad.mit.edu 37 2 89100619 89100619 + RNA SNP C T T rs75347118 bycluster TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 FSCN1 6624 broad.mit.edu 37 7 5643128 5643128 + Missense_Mutation SNP A T T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 HOXD3 3232 broad.mit.edu 37 2 177033982 177033982 + Missense_Mutation SNP A C C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MST1P2 11209 broad.mit.edu 37 1 16974256 16974256 + RNA SNP G C C rs2743519 bycluster;byfrequency;by2hit2allele TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MST1P2 11209 broad.mit.edu 37 1 16975495 16975495 + RNA SNP T C C rs2761532 bycluster;by2hit2allele TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MUC4 4585 broad.mit.edu 37 3 195506099 195506099 + Missense_Mutation SNP T C C novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 MUC4 4585 broad.mit.edu 37 3 195518112 195518113 + In_Frame_Ins INS - GTCTCCTGCGTAACA GTCTCCTGCGTAACA novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 NBPF1 55672 broad.mit.edu 37 1 16918653 16918653 + Splice_Site SNP C T T rs75226570 TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 PRIM2 5558 broad.mit.edu 37 6 57512788 57512789 + Splice_Site INS - TA TA novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 PRIM2 5558 broad.mit.edu 37 6 57512794 57512796 + Splice_Site DEL ATT - - novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 ATT ATT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 QSER1 79832 broad.mit.edu 37 11 33005748 33005748 + Frame_Shift_Del DEL C - - novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 TRIM16 10626 broad.mit.edu 37 17 15554772 15554772 + Missense_Mutation SNP A G G novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 Unknown 0 broad.mit.edu 37 1 148891580 148891580 + RNA SNP A T T rs3880332 bycluster TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 Unknown 0 broad.mit.edu 37 1 148891643 148891643 + RNA SNP A G G rs71219755 TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 Unknown 0 broad.mit.edu 37 17 16723994 16723994 + RNA SNP C T T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 USP49 25862 broad.mit.edu 37 6 41773626 41773626 + Nonsense_Mutation SNP G A A novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8 ZNF814 730051 broad.mit.edu 37 19 58385546 58385546 + Missense_Mutation SNP G T T novel TCGA-CW-5588-01A-01D-1534-10 TCGA-CW-5588-11A-01D-1535-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 574bd631-8862-468f-90e9-065aad6d1419 ab8b8c6d-9b42-4c32-b691-9cfd29859bf8