Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ARG1 383 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 131904255 131904256 + Frame_Shift_Ins INS - - T novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 ATAD5 79915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29182285 29182285 + Missense_Mutation SNP G G T novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 C16orf73 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1884331 1884331 + Missense_Mutation SNP T T A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 CDK12 51755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 37682372 37682372 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 DDX42 11325 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61890626 61890626 + Missense_Mutation SNP A A T novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 GALNT7 51809 broad.mit.edu;ucsc.edu 37 4 174216550 174216550 + Missense_Mutation SNP A G G novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 GGT7 2686 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 33437795 33437795 + Silent SNP C C T novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 GPNMB 10457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23309735 23309735 + Missense_Mutation SNP C C T novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 GTDC1 79712 hgsc.bcm.edu;ucsc.edu 37 2 144899563 144899564 + Frame_Shift_Del DEL GA GA - novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 GA GA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 HOXA1 3198 hgsc.bcm.edu 37 7 27135314 27135316 + In_Frame_Del DEL CGA CGA - novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 CGA CGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 LMLN 89782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 197748373 197748373 + Silent SNP C C A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 LRP4 4038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46895081 46895081 + Silent SNP G G A rs17848229 TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 LRTOMT 220074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 71816983 71816983 + Missense_Mutation SNP G G A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 NLRP9 338321 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56243947 56243947 + Missense_Mutation SNP C C A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 NR1I2 8856 broad.mit.edu;hgsc.bcm.edu 37 3 119528965 119528965 + Silent SNP G G A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 PAPOLA 10914 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 97009231 97009231 + Splice_Site SNP G G A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52696199 52696199 + Nonsense_Mutation SNP C C A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 PSMD3 5709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 38153787 38153787 + Missense_Mutation SNP G G C novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 RFC1 5981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 39297338 39297338 + Silent SNP C C T novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 RIPK2 8767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 90796294 90796294 + Missense_Mutation SNP G G T novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 RNF43 54894 broad.mit.edu;ucsc.edu 37 17 56440700 56440700 + Missense_Mutation SNP A G G rs145164323 alternate_allele TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 RPL3 6122 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 39713525 39713525 + Silent SNP G G A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 SEC61B 10952 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101984847 101984847 + Missense_Mutation SNP G G C novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 SLC2A4RG 56731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62373331 62373331 + Silent SNP T T A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 STMN2 11075 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 80549106 80549106 + Missense_Mutation SNP G G A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 TRAF3IP2 10758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 111913024 111913024 + Missense_Mutation SNP T T A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 TTC37 9652 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 94876456 94876456 + Silent SNP T T G novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 YTHDF3 253943 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 64099319 64099319 + Missense_Mutation SNP G G A rs61745071 TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 FAM92A3 0 broad.mit.edu 37 4 183959522 183959522 + RNA DEL A - - rs3039659 alternate_allele TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 Unknown 0 broad.mit.edu 37 15 20488228 20488229 + Splice_Site INS - TGAA TGAA novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6 Unknown 0 broad.mit.edu 37 9 68414581 68414581 + RNA SNP T A A novel TCGA-CZ-5454-01A-01D-1501-10 TCGA-CZ-5454-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d9fd1928-7b7d-4147-aeff-1618393ba26c 46d95289-69d8-4437-b2f3-5a3e5ccf7ef6