Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACSBG1 23205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 78485853 78485853 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a ADRA1A 148 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 26722260 26722260 + Missense_Mutation SNP G G C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a AFAP1L1 134265 hgsc.bcm.edu;ucsc.edu 37 5 148680717 148680717 + Missense_Mutation SNP G G A rs61734415 bycluster;byfrequency;by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a ANKRD35 148741 broad.mit.edu;ucsc.edu 37 1 145558859 145558859 + Missense_Mutation SNP G A A rs150752253 byfrequency TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a ARNT2 9915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 80762712 80762712 + Missense_Mutation SNP G G T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a ATP1A2 477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160091025 160091025 + Missense_Mutation SNP A A T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CACNA1D 776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53777118 53777118 + Silent SNP G G T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CAMTA1 23261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 7797034 7797034 + Missense_Mutation SNP C C T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CASP1 834 broad.mit.edu;hgsc.bcm.edu 37 11 104897592 104897592 + Missense_Mutation SNP C C A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CCDC99 0 broad.mit.edu;hgsc.bcm.edu 37 5 169026150 169026150 + Missense_Mutation SNP A A C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CD2AP 23607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 47567071 47567071 + Missense_Mutation SNP T T A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CELA1 1990 hgsc.bcm.edu 37 12 51740413 51740414 + Frame_Shift_Ins INS - - C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CELA1 1990 hgsc.bcm.edu 37 12 51740415 51740416 + Frame_Shift_Del DEL AC AC - novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CHD7 55636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 61757864 61757864 + Silent SNP C C T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CLMN 79789 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 95669872 95669872 + Missense_Mutation SNP A A G novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CLYBL 171425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 100543598 100543598 + Missense_Mutation SNP G G A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a COL1A2 1278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94051214 94051214 + Missense_Mutation SNP A A G novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a COL4A2 1284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 111144511 111144511 + Silent SNP T T C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a COL5A3 50509 broad.mit.edu;hgsc.bcm.edu 37 19 10087919 10087919 + Missense_Mutation SNP C C T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CSDA 8531 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 10854562 10854562 + Missense_Mutation SNP T T A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a DDX3X 1654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 41203543 41203544 + Frame_Shift_Ins INS - - T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a DEFB126 81623 hgsc.bcm.edu 37 20 126314 126314 + Missense_Mutation SNP C C G novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a DENND5A 23258 broad.mit.edu;ucsc.edu 37 11 9161237 9161237 + Missense_Mutation SNP A G G novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a EPC1 80314 hgsc.bcm.edu;ucsc.edu 37 10 32582523 32582529 + Frame_Shift_Del DEL CTGACCA CTGACCA - novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 CTGACCA CTGACCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a EPHB6 2051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 142563322 142563322 + Missense_Mutation SNP G G A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a FLG 2312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 152283596 152283596 + Missense_Mutation SNP G G T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a FRG2B 441581 hgsc.bcm.edu 37 10 135440117 135440119 + In_Frame_Del DEL CTT CTT - rs35318550 alternate_allele TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a FRG2B 441581 hgsc.bcm.edu 37 10 135440123 135440124 + Frame_Shift_Ins INS - - T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a GPM6A 2823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 176556193 176556193 + Frame_Shift_Del DEL C C - novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a KIF1A 547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241724433 241724433 + Missense_Mutation SNP G G C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a KRTAP19-8 728299 hgsc.bcm.edu 37 21 32410670 32410671 + Frame_Shift_Ins INS - - C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a MAML1 9794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179201812 179201812 + Silent SNP C C G novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a MKLN1 4289 hgsc.bcm.edu;ucsc.edu 37 7 131122679 131122679 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a MLL4 9757 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36221724 36221724 + Missense_Mutation SNP C C G novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a MRPL4 51073 broad.mit.edu;ucsc.edu 37 19 10370469 10370469 + Missense_Mutation SNP G T T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a MTMR10 54893 broad.mit.edu;ucsc.edu 37 15 31260141 31260141 + Missense_Mutation SNP T C C rs185348229 by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a NEFH 4744 hgsc.bcm.edu 37 22 29885577 29885578 + In_Frame_Ins INS - - AGAAGGCCAAGTCCCCTG novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a NFE2L2 4780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178098960 178098960 + Missense_Mutation SNP C C G novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a NOTCH2 4853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 120458045 120458045 + Missense_Mutation SNP A A G novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PARN 5073 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 14711480 14711480 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PASD1 139135 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 150842545 150842545 + Missense_Mutation SNP G G T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52588818 52588818 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G G - G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PCDHB9 56127 broad.mit.edu;hgsc.bcm.edu 37 5 140569080 140569080 + Missense_Mutation SNP G G T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PCDHGB4 8641 hgsc.bcm.edu 37 5 140767492 140767497 + In_Frame_Del DEL TGCCAG TGCCAG - rs145222727 TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 TGCCAG TGCCAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PDE11A 50940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178936671 178936671 + Missense_Mutation SNP G G A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PENK 5179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 57354177 57354177 + Missense_Mutation SNP G G C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PHYH 5264 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 13325777 13325777 + Missense_Mutation SNP G G T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PIF1 80119 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65114788 65114788 + Missense_Mutation SNP G G A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a POT1 25913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 124493109 124493109 + Silent SNP C C T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PRRC2B 84726 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 134357757 134357757 + Splice_Site SNP G G A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PTPDC1 138639 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 96860800 96860800 + Missense_Mutation SNP T T A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a RAB33A 9363 broad.mit.edu;hgsc.bcm.edu 37 X 129306194 129306194 + Missense_Mutation SNP C C T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a RRS1 23212 broad.mit.edu;hgsc.bcm.edu 37 8 67342089 67342089 + Missense_Mutation SNP G G T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a SAFB2 9667 broad.mit.edu;ucsc.edu 37 19 5613494 5613494 + Silent SNP C T T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a SCUBE2 57758 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 9091015 9091015 + Missense_Mutation SNP T T A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a SELE 6401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169701065 169701065 + Missense_Mutation SNP G G A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a SETX 23064 broad.mit.edu;ucsc.edu 37 9 135202159 135202159 + Missense_Mutation SNP C A A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a SH3RF1 57630 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 170190302 170190302 + Missense_Mutation SNP G G A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a SLC7A2 6542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17409424 17409424 + Silent SNP G G A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a SLC7A3 84889 broad.mit.edu;ucsc.edu 37 X 70147708 70147708 + Missense_Mutation SNP A C C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a SLCO4A1 28231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 61299368 61299368 + Missense_Mutation SNP A A T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a SLIT2 9353 broad.mit.edu;ucsc.edu 37 4 20512749 20512749 + Silent SNP T C C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a SRP72 6731 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 57349375 57349375 + Missense_Mutation SNP C C T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a TMEM59 9528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54509110 54509110 + Missense_Mutation SNP C C T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a TMEM59 9528 broad.mit.edu;ucsc.edu 37 1 54509109 54509109 + Silent SNP G A A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a WDFY3 23001 hgsc.bcm.edu;ucsc.edu 37 4 85738690 85738690 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a ZNF331 55422 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54080261 54080261 + Missense_Mutation SNP T T G novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a ZNF704 619279 hgsc.bcm.edu;ucsc.edu 37 8 81577290 81577298 + In_Frame_Del DEL ATCACTGTA ATCACTGTA - novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 ATCACTGTA ATCACTGTA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a ZNF805 390980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57752278 57752278 + Missense_Mutation SNP G G T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a B4GALNT4 338707 broad.mit.edu 37 11 379925 379925 + Missense_Mutation SNP C T T novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a CASZ1 54897 broad.mit.edu 37 1 10711096 10711097 + Frame_Shift_Ins INS - G G novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a HRNR 388697 broad.mit.edu 37 1 152188024 152188024 + Silent SNP C G G rs142170860 alternate_allele TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a KIAA1530 0 broad.mit.edu 37 4 1343562 1343562 + Missense_Mutation SNP G A A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a MUC4 4585 broad.mit.edu 37 3 195513468 195513468 + Missense_Mutation SNP G C C rs76596008 alternate_allele TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PCK1 5105 broad.mit.edu 37 20 56140965 56140967 + 3'UTR DEL ATC - - novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 ATC ATC ATC - ATC ATC Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a PRRX1 5396 broad.mit.edu 37 1 170695367 170695367 + Missense_Mutation SNP T C C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a RASA2 5922 broad.mit.edu 37 3 141295907 141295907 + Missense_Mutation SNP G A A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a RRN3P3 100131998 broad.mit.edu 37 16 22444123 22444123 + RNA SNP G A A rs2974874 TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a Unknown 0 broad.mit.edu 37 15 29084045 29084045 + RNA SNP T G G rs75345913 bycluster TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a Unknown 0 broad.mit.edu 37 16 70268080 70268080 + RNA SNP T C C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a Unknown 0 broad.mit.edu 37 17 34235676 34235676 + RNA SNP C A A novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a Unknown 0 broad.mit.edu 37 4 6239041 6239041 + RNA DEL G - - rs144644113 bycluster;by1000genomes TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a ZNF688 146542 broad.mit.edu 37 16 30581350 30581351 + Frame_Shift_Ins INS - C C novel TCGA-CZ-5456-01A-01D-1501-10 TCGA-CZ-5456-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 45d5c746-60e3-4531-8db0-fd648811d45f fe4271a8-7eda-4760-b5fb-c3f160edde4a