Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAM23 8745 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 207413075 207413075 + Silent SNP G G T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f ADH5 128 broad.mit.edu;hgsc.bcm.edu 37 4 99997942 99997942 + Missense_Mutation SNP T T A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f AGAP7 653268 hgsc.bcm.edu 37 10 51485991 51485991 + Frame_Shift_Del DEL C C - novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f AQPEP 206338 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 115327884 115327884 + Missense_Mutation SNP T T A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f ARHGAP26 23092 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 142150382 142150382 + Missense_Mutation SNP G G T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f ARID1B 57492 broad.mit.edu;hgsc.bcm.edu 37 6 157469827 157469827 + Missense_Mutation SNP T T A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f ATRX 546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 76875909 76875909 + Missense_Mutation SNP C C A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f BCL2A1 597 broad.mit.edu;hgsc.bcm.edu 37 15 80253460 80253460 + Missense_Mutation SNP T T A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f CACNA1C 775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 2675675 2675675 + Missense_Mutation SNP C C G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f CD300LB 124599 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72522164 72522164 + Silent SNP G G T rs111972938 alternate_allele TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f CDH3 1001 broad.mit.edu;hgsc.bcm.edu 37 16 68721619 68721619 + Missense_Mutation SNP C C T rs145851551 TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f CELF3 11189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151688472 151688472 + Silent SNP G G A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f CES2 8824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 66973125 66973125 + Missense_Mutation SNP T T C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f CHEK2 11200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 29121349 29121349 + Missense_Mutation SNP A A C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f COL2A1 1280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 48388230 48388230 + Missense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f CUL3 8452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 225360600 225360600 + Missense_Mutation SNP G G T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f CUL9 23113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43188337 43188337 + Silent SNP G G A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f DAO 1610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 109290797 109290797 + Missense_Mutation SNP A A G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f DDX20 11218 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 112308358 112308358 + Splice_Site SNP G G A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f DLX3 1747 broad.mit.edu;hgsc.bcm.edu 37 17 48069215 48069215 + Missense_Mutation SNP A A T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f DNAJC11 55735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 6704634 6704634 + Missense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f DOCK2 1794 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 169145692 169145692 + Missense_Mutation SNP G G C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f DPT 1805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 168698362 168698362 + Nonsense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f EIF4G2 1982 broad.mit.edu;hgsc.bcm.edu 37 11 10820873 10820873 + Missense_Mutation SNP A A G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f ERBB4 2066 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 212576841 212576841 + Missense_Mutation SNP A A T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f ERI2 112479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 20810063 20810063 + Missense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f ERP27 121506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 15087884 15087884 + Missense_Mutation SNP T T C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f FIGN 55137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 164468066 164468066 + Silent SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f HCN1 348980 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 45262062 45262062 + Missense_Mutation SNP G G C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f HGS 9146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 79652641 79652641 + Missense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f IFT140 9742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 1616280 1616280 + Missense_Mutation SNP G G A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f ILDR2 387597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 166944470 166944470 + Silent SNP G G A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f JUNB 3726 broad.mit.edu;hgsc.bcm.edu 37 19 12903494 12903494 + Silent SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f KCNA4 3739 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 30033589 30033589 + Missense_Mutation SNP C C A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f KCTD2 23510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73058235 73058235 + Silent SNP C C G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f KDR 3791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 55956163 55956163 + Missense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f KIF14 9928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200587322 200587322 + Missense_Mutation SNP G G C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f LINS 55180 hgsc.bcm.edu;ucsc.edu 37 15 101112168 101112168 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f LTB4R 1241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24785139 24785139 + Silent SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f METT10D 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2323880 2323880 + Missense_Mutation SNP T T G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f MKL2 57496 broad.mit.edu;ucsc.edu 37 16 14355166 14355166 + Missense_Mutation SNP C G G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49436587 49436587 + Missense_Mutation SNP G G C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f MSH3 4437 hgsc.bcm.edu 37 5 80057496 80057496 + Missense_Mutation SNP A A C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f MUC4 4585 hgsc.bcm.edu 37 3 195506550 195506597 + In_Frame_Del DEL GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG - novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f MYO1F 4542 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8595162 8595162 + Missense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f N4BP1 9683 hgsc.bcm.edu;ucsc.edu 37 16 48595382 48595382 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f NEUROD1 4760 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 182542705 182542705 + Missense_Mutation SNP T T C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f NPHS1 4868 hgsc.bcm.edu 37 19 36330419 36330420 + Frame_Shift_Ins INS - - G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f NUFIP2 57532 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27613674 27613674 + Silent SNP G G T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f NUP214 8021 hgsc.bcm.edu;ucsc.edu 37 9 134067639 134067640 + Frame_Shift_Del DEL TC TC - novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f NUP37 79023 hgsc.bcm.edu;ucsc.edu 37 12 102471203 102471203 + Frame_Shift_Del DEL C C - novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f OR13C2 392376 broad.mit.edu;hgsc.bcm.edu 37 9 107367525 107367525 + Silent SNP G G A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f OR5M10 390167 hgsc.bcm.edu 37 11 56344846 56344846 + Missense_Mutation SNP T T A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f OR5M10 390167 hgsc.bcm.edu 37 11 56344847 56344847 + Silent SNP T T G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f P2RX4 5025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 121660766 121660766 + Silent SNP G G A rs140643624 TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f PEG3 5178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57325755 57325755 + Missense_Mutation SNP T T C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f PLAC4 191585 hgsc.bcm.edu 37 21 42551433 42551433 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f PLAU 5328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75676303 75676303 + Missense_Mutation SNP G G C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f PLEKHJ1 55111 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2234235 2234235 + Missense_Mutation SNP G G T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f PRKD3 23683 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 37501595 37501595 + Silent SNP A A C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f REN 5972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204128614 204128614 + Missense_Mutation SNP T T A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f RHBDF2 79651 broad.mit.edu;ucsc.edu 37 17 74468019 74468019 + Missense_Mutation SNP A T T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f RPS19BP1 91582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 39928457 39928457 + Missense_Mutation SNP T T C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f RYR1 6261 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39034251 39034251 + Missense_Mutation SNP C C A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f SAMHD1 25939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 35547877 35547877 + Missense_Mutation SNP T T C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f SLC25A23 79085 broad.mit.edu;hgsc.bcm.edu 37 19 6444201 6444201 + Missense_Mutation SNP A A T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f SLC9A11 0 hgsc.bcm.edu 37 1 173517587 173517587 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f SPAG8 26206 hgsc.bcm.edu 37 9 35811508 35811508 + Missense_Mutation SNP A A G rs28409023 TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f SPAG8 26206 hgsc.bcm.edu 37 9 35811509 35811509 + Silent SNP G G A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f SPCS1 28972 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52741704 52741704 + Missense_Mutation SNP T T G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f SPEG 10290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220333895 220333895 + Missense_Mutation SNP T T G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f TGM7 116179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 43577100 43577100 + Missense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f THBS1 7057 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 39881491 39881491 + Missense_Mutation SNP C C A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f THOC4 0 broad.mit.edu;hgsc.bcm.edu 37 17 79846407 79846407 + Missense_Mutation SNP C C A rs150564817 alternate_allele TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f TKTL2 84076 broad.mit.edu;ucsc.edu 37 4 164393649 164393649 + Missense_Mutation SNP T G G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f TNKS2 80351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 93604754 93604754 + Missense_Mutation SNP T T C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f TPST1 8460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 65705728 65705728 + Nonsense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f TRIO 7204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 14485224 14485224 + Missense_Mutation SNP A A T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f TULP4 56995 broad.mit.edu;ucsc.edu 37 6 158924983 158924983 + Missense_Mutation SNP T A A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 215955490 215955490 + Missense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f USP40 55230 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234468567 234468567 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f VHL 7428 hgsc.bcm.edu 37 3 10183800 10183800 + Missense_Mutation SNP A A T rs143985153 alternate_allele TCGA-CZ-5457-01A-01W-1528-10 TCGA-CZ-5457-11A-01W-1528-10 A A A T A A Unknown Valid Somatic Phase_I WXS Illumina Miseq . . PacBio RS c1ee1be5-2a5d-44ac-baa2-ccb30e862ae0 699d8dc1-8145-4fa5-b480-c970b5ed6138 VIPAR 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77916095 77916095 + Missense_Mutation SNP C C T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f WDR8 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 3564112 3564112 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f ZNF280D 54816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 56924221 56924221 + Silent SNP A A C novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f EGFL7 51162 broad.mit.edu 37 9 139563044 139563044 + Missense_Mutation SNP C G G novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f MST1P9 0 broad.mit.edu 37 1 17084510 17084510 + Silent SNP G A A rs61769731 byfrequency TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f MUC4 4585 broad.mit.edu 37 3 195505801 195505801 + Missense_Mutation SNP G T T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f NAT14 57106 broad.mit.edu 37 19 55998035 55998035 + Frame_Shift_Del DEL G - - novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f SFRS2 0 broad.mit.edu 37 17 74732524 74732524 + Nonsense_Mutation SNP G A A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f TTYH3 80727 broad.mit.edu 37 7 2698601 2698601 + Silent SNP C T T novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f UBXN11 91544 broad.mit.edu 37 1 26608890 26608891 + Frame_Shift_Del DEL CC - - rs140364749 bycluster;by1000genomes;alternate_allele TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 CC CC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f UBXN11 91544 broad.mit.edu 37 1 26608893 26608896 + Frame_Shift_Del DEL GGAC - - novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 GGAC GGAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f Unknown 0 broad.mit.edu 37 16 70268081 70268081 + RNA SNP G A A novel TCGA-CZ-5457-01A-01D-1501-10 TCGA-CZ-5457-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4c5e0bb3-90ce-4942-aa93-80ab4bfd9fb2 a9a305ba-8696-4646-8ab6-856a7572854f