Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ALCAM 214 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 105266275 105266275 + Missense_Mutation SNP G G A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 ANKHD1 54882 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 139905891 139905891 + Silent SNP C C T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 ARIH1 25820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72847625 72847625 + Missense_Mutation SNP T T G novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 BAP1 8314 hgsc.bcm.edu;ucsc.edu 37 3 52443623 52443647 + In_Frame_Del DEL ACCTGCGATGAGGAAAGGAAAGCAG ACCTGCGATGAGGAAAGGAAAGCAG - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 ACCTGCGATGAGGAAAGGAAAGCAG ACCTGCGATGAGGAAAGGAAAGCAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 CACNA1I 8911 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40062013 40062013 + Splice_Site SNP T T A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 CCDC120 90060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 48923285 48923285 + Missense_Mutation SNP C C T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 CHL1 10752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 367660 367660 + Missense_Mutation SNP T T A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 CHMP4B 128866 hgsc.bcm.edu;ucsc.edu 37 20 32436409 32436409 + Frame_Shift_Del DEL G G - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 CLCN1 1180 hgsc.bcm.edu;ucsc.edu 37 7 143020428 143020428 + Silent SNP C C A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 DAPK3 1613 hgsc.bcm.edu;ucsc.edu 37 19 3964350 3964350 + Missense_Mutation SNP C C T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 FEM1C 56929 broad.mit.edu;ucsc.edu 37 5 114860153 114860153 + Missense_Mutation SNP T C C novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 FTSJD2 23070 broad.mit.edu;ucsc.edu 37 6 37447813 37447813 + Missense_Mutation SNP C G G novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 FZD9 8326 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 72849270 72849270 + Silent SNP G G A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 GPRIN1 114787 hgsc.bcm.edu 37 5 176026124 176026147 + In_Frame_Del DEL AAGACCCAGGATCCTCCTTCCTCG AAGACCCAGGATCCTCCTTCCTCG - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 AAGACCCAGGATCCTCCTTCCTCG AAGACCCAGGATCCTCCTTCCTCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 GZF1 64412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 23350858 23350858 + Missense_Mutation SNP T T G novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 HIVEP1 3096 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 12125187 12125187 + Nonsense_Mutation SNP C C A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 IFT46 56912 hgsc.bcm.edu;ucsc.edu 37 11 118427645 118427647 + In_Frame_Del DEL TCA TCA - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 TCA TCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 ITGB1 3688 broad.mit.edu;hgsc.bcm.edu 37 10 33199315 33199315 + Missense_Mutation SNP T T C novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 JUN 3725 broad.mit.edu;hgsc.bcm.edu 37 1 59248705 59248705 + Missense_Mutation SNP G G T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 KCNT2 343450 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 196254849 196254849 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 KIF14 9928 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 200555334 200555334 + Missense_Mutation SNP G G C novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 KIF1A 547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 241686667 241686667 + Nonsense_Mutation SNP G G A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 LCP2 3937 broad.mit.edu;hgsc.bcm.edu 37 5 169694070 169694070 + Missense_Mutation SNP G G A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 LOC286238 286238 broad.mit.edu;ucsc.edu 37 9 91262512 91262512 + Missense_Mutation SNP G C C novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 LRP12 29967 hgsc.bcm.edu;ucsc.edu 37 8 105503470 105503470 + Missense_Mutation SNP C C T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 MAGEC1 9947 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 140993373 140993373 + Silent SNP G G A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 MIR548N 100302152 hgsc.bcm.edu;ucsc.edu 37 2 179350870 179350870 + RNA SNP G G C novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 MSR1 4481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 16035394 16035394 + Splice_Site SNP C C T rs150131889 byfrequency;alternate_allele TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 MTMR11 10903 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 149908474 149908474 + Splice_Site SNP C C T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 NDP 4693 broad.mit.edu;ucsc.edu 37 X 43809267 43809267 + Silent SNP C A A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 NFKBIZ 64332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 101573504 101573504 + Missense_Mutation SNP G G T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 OR6V1 346517 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 142749937 142749937 + Missense_Mutation SNP G G A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52610659 52610659 + Frame_Shift_Del DEL T T - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 PCLO 27445 hgsc.bcm.edu 37 7 82784434 82784463 + In_Frame_Del DEL TTTGTTGAGCCAGGCTGTTGAGATGGGGGC TTTGTTGAGCCAGGCTGTTGAGATGGGGGC - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 TTTGTTGAGCCAGGCTGTTGAGATGGGGGC TTTGTTGAGCCAGGCTGTTGAGATGGGGGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 PLEKHO2 80301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 65157277 65157277 + Silent SNP G G A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 PROS1 5627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 93598122 93598122 + Frame_Shift_Del DEL A A - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 RGP1 9827 broad.mit.edu;hgsc.bcm.edu 37 9 35751400 35751400 + Missense_Mutation SNP C C T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 RNF144A 9781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 7164573 7164573 + Missense_Mutation SNP G G C novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47163209 47163209 + Nonsense_Mutation SNP T T A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 SLC2A8 29988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130169437 130169437 + Missense_Mutation SNP G G A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 TRO 7216 hgsc.bcm.edu 37 X 54949288 54949289 + Frame_Shift_Ins INS - - C novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 TRRAP 8295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 98507681 98507681 + Silent SNP T T C novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 USF1 7391 hgsc.bcm.edu;ucsc.edu 37 1 161011524 161011524 + Frame_Shift_Del DEL C C - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188200 10188200 + Missense_Mutation SNP C C A rs5030811 bycluster;alternate_allele TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 WNK1 65125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 977348 977348 + Missense_Mutation SNP A A G novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 ZNF385A 25946 hgsc.bcm.edu;ucsc.edu 37 12 54764794 54764794 + Frame_Shift_Del DEL C C - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 ZNF655 79027 broad.mit.edu;hgsc.bcm.edu 37 7 99169358 99169358 + Missense_Mutation SNP C C A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 DAB1 1600 broad.mit.edu 37 1 57481090 57481090 + Missense_Mutation SNP C T T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 GALNT9 50614 broad.mit.edu 37 12 132682466 132682466 + Frame_Shift_Del DEL C - - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 MEGF6 1953 broad.mit.edu 37 1 3519151 3519152 + Frame_Shift_Del DEL CA - - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 OR4N3P 390539 broad.mit.edu 37 15 22414024 22414024 + Missense_Mutation SNP C T T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 PCDH12 51294 broad.mit.edu 37 5 141337114 141337114 + Missense_Mutation SNP C A A novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 TAF1 6872 broad.mit.edu 37 X 70607246 70607246 + Missense_Mutation SNP C T T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 UBXN11 91544 broad.mit.edu 37 1 26608878 26608883 + In_Frame_Del DEL CCGGGA - - rs140364749 bycluster;by1000genomes TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 CCGGGA CCGGGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 Unknown 0 broad.mit.edu 37 16 32266881 32266881 + RNA DEL T - - novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 Unknown 0 broad.mit.edu 37 9 68414259 68414259 + RNA SNP C T T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 Unknown 0 broad.mit.edu 37 9 70182346 70182346 + RNA DEL G - - rs71212119 TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1 Unknown 0 broad.mit.edu 37 X 114953432 114953432 + RNA SNP G T T novel TCGA-CZ-5470-01A-01D-1501-10 TCGA-CZ-5470-11A-01D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c9a7ca9e-c36e-46c1-926f-4a57a0584cb0 d0636c20-cd70-4fdf-b273-4756d9effbf1