Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC2 1244 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 101552068 101552068 + Silent SNP A A G novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 BOC 91653 broad.mit.edu 37 3 112993348 112993348 + Nonsense_Mutation SNP C G G novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 C3orf70 285382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 184801259 184801259 + Missense_Mutation SNP T T C novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 CARD10 29775 broad.mit.edu;ucsc.edu 37 22 37893039 37893039 + Missense_Mutation SNP A G G novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 CCDC88B 283234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64111336 64111336 + Silent SNP C C A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 CHAF1A 10036 broad.mit.edu;ucsc.edu 37 19 4433326 4433326 + Silent SNP C T T novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 113392679 113392679 + Missense_Mutation SNP G G A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 DERL2 51009 hgsc.bcm.edu;ucsc.edu 37 17 5383897 5383897 + Frame_Shift_Del DEL A A - novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 DSCAML1 57453 broad.mit.edu 37 11 117299207 117299208 + Frame_Shift_Del DEL CT - - novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56506875 56506875 + Missense_Mutation SNP C C T rs183335254 by1000genomes;alternate_allele TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 EIF2A 83939 broad.mit.edu;ucsc.edu 37 3 150264607 150264607 + Silent SNP G C C novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 FAM110C 642273 broad.mit.edu 37 2 46063 46063 + Missense_Mutation SNP T A A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 FAM83H 286077 broad.mit.edu 37 8 144810219 144810219 + Missense_Mutation SNP C T T novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 GIMAP8 155038 hgsc.bcm.edu;ucsc.edu 37 7 150174278 150174278 + Missense_Mutation SNP G G A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 GRIK5 2901 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42507514 42507514 + Missense_Mutation SNP C C A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 ITIH4 3700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52858939 52858939 + Silent SNP G G A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 KLF8 11279 broad.mit.edu;hgsc.bcm.edu 37 X 56295819 56295819 + Missense_Mutation SNP G G C novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 LOC152024 0 broad.mit.edu 37 3 24138699 24138699 + RNA DEL A - - novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 MAGED1 9500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 51638670 51638670 + Silent SNP G G A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 MED24 9862 broad.mit.edu;ucsc.edu 37 17 38182523 38182523 + Missense_Mutation SNP A C C novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11177096 11177096 + Missense_Mutation SNP C C T novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 OR2AT4 341152 broad.mit.edu;ucsc.edu 37 11 74800063 74800063 + Silent SNP G C C novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 OR51B4 79339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5322438 5322438 + Missense_Mutation SNP C C G novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 PAFAH1B1 5048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2570313 2570313 + Missense_Mutation SNP G G A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 PCDHGA1 56114 broad.mit.edu;ucsc.edu 37 5 140712672 140712672 + Missense_Mutation SNP G C C novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 PCNX 22990 broad.mit.edu;ucsc.edu 37 14 71462632 71462632 + Missense_Mutation SNP C G G novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 PER2 8864 broad.mit.edu;ucsc.edu 37 2 239181739 239181739 + Missense_Mutation SNP A T T novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 PLA2G6 8398 broad.mit.edu 37 22 38516843 38516843 + Silent SNP G A A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 PLEKHA6 22874 broad.mit.edu;ucsc.edu 37 1 204236640 204236640 + Missense_Mutation SNP C A A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 QRFPR 84109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 122250674 122250674 + Missense_Mutation SNP T T C novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 SF3A2 8175 broad.mit.edu 37 19 2245452 2245452 + Silent SNP C A A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 SIRPA 140885 broad.mit.edu 37 20 1902301 1902301 + Missense_Mutation SNP G A A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 ST6GALNAC1 55808 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74622132 74622132 + Silent SNP C C T novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 STAT5B 6777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40371847 40371847 + Silent SNP C C T novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 THEM5 284486 broad.mit.edu 37 1 151820746 151820746 + Missense_Mutation SNP C G G novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 TLL2 7093 broad.mit.edu;ucsc.edu 37 10 98133425 98133425 + Missense_Mutation SNP T G G novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 TRIM21 6737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 4411235 4411235 + Silent SNP G G A novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 Unknown 0 broad.mit.edu 37 19 33317138 33317140 + RNA DEL TTC - - novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 TTC TTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52 USP48 84196 broad.mit.edu;ucsc.edu 37 1 22032266 22032266 + Missense_Mutation SNP C G G novel TCGA-A3-3347-01A-02D-1386-10 TCGA-A3-3347-11A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2f4a6bd7-16ff-4689-b41d-c5fabb87823b faae36b9-3b70-4f6c-bc9b-45dbf2114b52